Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g11170 Coffea canephora HOM05D006777 ORTHO05D008360 2.3e-32 141.7 77 100.0
FvH4_4g13710 Fragaria vesca HOM05D006777 ORTHO05D008360 1.0e-19 99.8 50 96.0
FAN12G2838 Fragaria x ananassa HOM05D006777 ORTHO05D008360 1.0e-19 99.8 50 96.0
FAN22G2344 Fragaria x ananassa HOM05D006777 ORTHO05D008360 1.0e-19 99.8 50 96.0
FAN17G1701 Fragaria x ananassa HOM05D006777 ORTHO05D008360 1.3e-19 99.4 52 92.3
Actinidia23410 Actinidia chinensis HOM05D006777 ORTHO05D008360 1.7e-19 99.0 50 96.0
CiPaw.02G065600 Carya illinoinensis HOM05D006777 ORTHO05D008360 1.7e-19 99.0 50 96.0
Duzib268G0333 Durio zibethinus HOM05D006777 ORTHO05D008360 1.7e-19 99.0 50 96.0
Glyma.08G111500 Glycine max HOM05D006777 ORTHO05D008360 1.7e-19 99.0 50 96.0
Lj4g0000567 Lotus japonicus HOM05D006777 ORTHO05D008360 1.7e-19 99.0 52 92.3
Os03g0848300 Oryza sativa ssp. japonica HOM05D006777 ORTHO05D008360 1.7e-19 99.0 50 96.0
Thecc.04G200300 Theobroma cacao HOM05D006777 ORTHO05D008360 1.7e-19 99.0 50 96.0
TAR362G0671 Trochodendron aralioides HOM05D006777 ORTHO05D008360 1.7e-19 99.0 50 96.0
Zm00001eb210820 Zea mays HOM05D006777 ORTHO05D008360 1.7e-19 99.0 50 96.0
Sopen12g033210 Solanum pennellii HOM05D006777 ORTHO05D008360 2.2e-19 98.6 50 96.0
FAN07G2803 Fragaria x ananassa HOM05D006777 ORTHO05D008360 2.9e-19 98.2 54 88.9
Sc25g0003260 Simmondsia chinensis HOM05D006777 ORTHO05D008360 2.9e-19 98.2 50 94.0
Solyc12g098430.2 Solanum lycopersicum HOM05D006777 ORTHO05D008360 2.9e-19 98.2 50 94.0
CSS0000801 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 3.8e-19 97.8 50 94.0
Migut.G00716 Erythranthe guttata HOM05D006777 ORTHO05D008360 3.8e-19 97.8 50 94.0
RcHm_v2.0_Chr4g0414361 Rosa chinensis HOM05D006777 ORTHO05D008360 3.8e-19 97.8 50 94.0
RcHm_v2.0_Chr7g0213901 Rosa chinensis HOM05D006777 ORTHO05D008360 3.8e-19 97.8 50 94.0
SalBow8G2353 Salvia bowleyana HOM05D006777 ORTHO05D008360 3.8e-19 97.8 50 94.0
SalBow8G2632 Salvia bowleyana HOM05D006777 ORTHO05D008360 3.8e-19 97.8 50 94.0
EL10Ac3g05505 Beta vulgaris HOM05D006777 ORTHO05D008360 5.0e-19 97.4 50 92.0
AUR62016205 Chenopodium quinoa HOM05D006777 ORTHO05D008360 5.0e-19 97.4 50 92.0
AUR62039283 Chenopodium quinoa HOM05D006777 ORTHO05D008360 5.0e-19 97.4 50 92.0
Lalb_Chr07g0186741 Lupinus albus HOM05D006777 ORTHO05D008360 5.0e-19 97.4 52 90.4
Peaxi162Scf00652g00116 Petunia axillaris HOM05D006777 ORTHO05D008360 5.0e-19 97.4 51 92.2
Actinidia35856 Actinidia chinensis HOM05D006777 ORTHO05D008360 6.5e-19 97.1 50 92.0
MSTRG.4231 Avicennia marina HOM05D006777 ORTHO05D008360 6.5e-19 97.1 52 90.4
Glyma.05G153800 Glycine max HOM05D006777 ORTHO05D008360 6.5e-19 97.1 50 94.0
Gohir.A02G020900 Gossypium hirsutum HOM05D006777 ORTHO05D008360 6.5e-19 97.1 50 94.0
Gohir.D02G024900 Gossypium hirsutum HOM05D006777 ORTHO05D008360 6.5e-19 97.1 50 94.0
Gorai.005G030800 Gossypium raimondii HOM05D006777 ORTHO05D008360 6.5e-19 97.1 50 94.0
HanXRQChr01g0022451 Helianthus annuus HOM05D006777 ORTHO05D008360 6.5e-19 97.1 50 92.0
BcaC02g09355 Brassica carinata HOM05D006777 ORTHO05D008360 8.5e-19 96.7 50 94.0
C04p41680 Brassica napus HOM05D006777 ORTHO05D008360 8.5e-19 96.7 50 94.0
BolC4t25746H Brassica oleracea HOM05D006777 ORTHO05D008360 8.5e-19 96.7 50 94.0
Manes.03G146100 Manihot esculenta HOM05D006777 ORTHO05D008360 8.5e-19 96.7 50 92.0
Eucgr.H02768 Eucalyptus grandis HOM05D006777 ORTHO05D008360 1.1e-18 96.3 50 92.0
AL7G42240 Arabidopsis lyrata HOM05D006777 ORTHO05D008360 1.4e-18 95.9 50 92.0
AT4G14147 Arabidopsis thaliana HOM05D006777 ORTHO05D008360 1.4e-18 95.9 50 92.0
CANSAT78G1417 Cannabis sativa HOM05D006777 ORTHO05D008360 1.4e-18 95.9 50 94.0
Carub.0007s2827 Capsella rubella HOM05D006777 ORTHO05D008360 1.4e-18 95.9 50 92.0
Dinv27219 Davidia involucrata HOM05D006777 ORTHO05D008360 1.4e-18 95.9 50 94.0
BcaB02g08630 Brassica carinata HOM05D006777 ORTHO05D008360 1.9e-18 95.5 50 92.0
A04p08010 Brassica napus HOM05D006777 ORTHO05D008360 1.9e-18 95.5 50 92.0
BraA04t16489Z Brassica rapa HOM05D006777 ORTHO05D008360 1.9e-18 95.5 50 92.0
Thhalv10026384m.g Eutrema salsugineum HOM05D006777 ORTHO05D008360 1.9e-18 95.5 50 92.0
Medtr8g085290 Medicago truncatula HOM05D006777 ORTHO05D008360 1.9e-18 95.5 52 88.5
Sp7g12000 Schrenkiella parvula HOM05D006777 ORTHO05D008360 1.9e-18 95.5 50 92.0
CDE06G2004 Ceratophyllum demersum HOM05D006777 ORTHO05D008360 2.5e-18 95.1 50 92.0
Nn1g07943 Nelumbo nucifera HOM05D006777 ORTHO05D008360 2.5e-18 95.1 50 92.0
Potri.017G057400 Populus trichocarpa HOM05D006777 ORTHO05D008360 2.5e-18 95.1 50 88.0
THA.LOC104804809 Tarenaya hassleriana HOM05D006777 ORTHO05D008360 2.5e-18 95.1 50 92.0
THA.LOC104808706 Tarenaya hassleriana HOM05D006777 ORTHO05D008360 2.5e-18 95.1 50 92.0
TWI53G1099 Tripterygium wilfordii HOM05D006777 ORTHO05D008360 2.5e-18 95.1 50 92.0
HPP92_006972 Vanilla planifolia HOM05D006777 ORTHO05D008360 2.5e-18 95.1 50 92.0
Aqoxy5G00004 Aquilegia oxysepala HOM05D006777 ORTHO05D008360 4.2e-18 94.4 46 97.8
Dinv38213 Davidia involucrata HOM05D006777 ORTHO05D008360 4.2e-18 94.4 50 92.0
PSO017G6923 Papaver somniferum HOM05D006777 ORTHO05D008360 4.2e-18 94.4 50 92.0
PSO063G4325 Papaver somniferum HOM05D006777 ORTHO05D008360 4.2e-18 94.4 50 92.0
Atru.chr4.1633 Acer truncatum HOM05D006777 ORTHO05D008360 5.5e-18 94.0 50 92.0
Aa31LG9G3900 Aethionema arabicum HOM05D006777 ORTHO05D008360 5.5e-18 94.0 50 90.0
CARHR220180 Cardamine hirsuta HOM05D006777 ORTHO05D008360 5.5e-18 94.0 50 90.0
DCAR_026626 Daucus carota HOM05D006777 ORTHO05D008360 5.5e-18 94.0 51 88.2
Sed0006533 Sechium edule HOM05D006777 ORTHO05D008360 5.5e-18 94.0 50 92.0
GSVIVG01020914001 Vitis vinifera HOM05D006777 ORTHO05D008360 5.5e-18 94.0 50 90.0
Hma1.2p1_0187F.1_g082380 Hydrangea macrophylla HOM05D006777 ORTHO05D008360 7.2e-18 93.6 50 92.0
Hma1.2p1_0187F.1_g082390 Hydrangea macrophylla HOM05D006777 ORTHO05D008360 7.2e-18 93.6 50 92.0
Prupe.1G158800 Prunus persica HOM05D006777 ORTHO05D008360 7.2e-18 93.6 50 90.0
Sed0015167 Sechium edule HOM05D006777 ORTHO05D008360 7.2e-18 93.6 50 90.0
ClCG06G008050 Citrullus lanatus HOM05D006777 ORTHO05D008360 9.3e-18 93.2 50 90.0
Ciclev10006063m.g Citrus clementina HOM05D006777 ORTHO05D008360 9.3e-18 93.2 50 86.0
MELO3C019533.2 Cucumis melo HOM05D006777 ORTHO05D008360 9.3e-18 93.2 50 90.0
CsaV3_2G011130 Cucumis sativus L. HOM05D006777 ORTHO05D008360 9.3e-18 93.2 50 90.0
Lalb_Chr12g0205521 Lupinus albus HOM05D006777 ORTHO05D008360 1.2e-17 92.8 52 86.5
Psat7g074160 Pisum sativum HOM05D006777 ORTHO05D008360 1.2e-17 92.8 52 88.5
Lsat_1_v5_gn_1_72060 Lactuca sativa HOM05D006777 ORTHO05D008360 1.6e-17 92.4 50 90.0
Mapoly0060s0011 Marchantia polymorpha HOM05D006777 ORTHO05D008360 1.6e-17 92.4 50 90.0
Nitab4.5_0000850g0170 Nicotiana tabacum HOM05D006777 ORTHO05D008360 1.6e-17 92.4 46 93.5
PGR083G1334 Punica granatum HOM05D006777 ORTHO05D008360 1.6e-17 92.4 50 88.0
ATR1147G041 Amborella trichopoda HOM05D006777 ORTHO05D008360 2.1e-17 92.0 50 90.0
TPR.G11902 Trifolium pratense HOM05D006777 ORTHO05D008360 2.1e-17 92.0 47 93.6
arahy.Tifrunner.gnm1.ann1.QE6BNJ Arachis hypogaea HOM05D006777 ORTHO05D008360 2.7e-17 91.7 50 88.0
MD04G1012700 Malus domestica HOM05D006777 ORTHO05D008360 2.7e-17 91.7 50 88.0
AagrBONN_evm.TU.Sc2ySwM_228.5073 Anthoceros agrestis HOM05D006777 ORTHO05D008360 3.6e-17 91.3 50 88.0
Hund11971 Selenicereus undatus HOM05D006777 ORTHO05D008360 6.1e-17 90.5 47 89.4
arahy.Tifrunner.gnm1.ann1.GXV5N1 Arachis hypogaea HOM05D006777 ORTHO05D008360 1.0e-16 89.7 50 86.0
Hund03125 Selenicereus undatus HOM05D006777 ORTHO05D008360 3.0e-16 88.2 48 85.4
Pp3c3_19880 Physcomitrium patens HOM05D006777 ORTHO05D008360 6.7e-16 87.0 50 84.0
Nitab4.5_0000676g0120 Nicotiana tabacum HOM05D006777 ORTHO05D008360 2.5e-15 85.1 51 84.3
SGA_v2.0_scaffold14G07057 Striga asiatica HOM05D006777 ORTHO05D008360 7.4e-15 83.6 43 90.7
SMO146G0157 Selaginella moellendorffii HOM05D006777 ORTHO05D008360 1.3e-14 82.8 50 80.0
SGA_v2.0_scaffold4G02170 Striga asiatica HOM05D006777 ORTHO05D008360 3.7e-14 81.3 41 92.7
CSS0011736 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 2.0e-12 75.5 37 91.9
CBR_g4477 Chara braunii HOM05D006777 ORTHO05D008360 4.5e-12 74.3 50 66.0
CSS0009674 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 5.5e-10 67.4 38 84.2
Cpa.g.c27575.2 Carica papaya HOM05D006777 ORTHO05D008360 5.5e-10 67.4 32 96.9
unitig_37.g12031 Utricularia gibba HOM05D006777 ORTHO05D008360 1.6e-09 65.9 32 93.8
MELO3C020359.2 Cucumis melo HOM05D006777 ORTHO05D008360 6.1e-09 63.9 32 90.6
Cre06.g260800 Chlamydomonas reinhardtii HOM05D006777 ORTHO05D008360 7.9e-09 63.5 47 63.8
Duzib212G0541 Durio zibethinus HOM05D006777 ORTHO05D008360 2.0e-07 58.9 28 96.4
vmacro00459 Vaccinium macrocarpon HOM05D006777 ORTHO05D008360 2.0e-07 58.9 28 96.4
Sabra17G0050600 Salix brachista HOM05D006777 ORTHO05D008360 9.7e-07 56.6 28 89.3
COL.COLO4_20174 Corchorus olitorius HOM05D001598 ORTHO05D002757 1.7e-06 55.8 28 92.9
Haze_27630 Corylus avellana HOM05D006777 ORTHO05D008360 1.7e-06 55.8 47 59.6
CsaV3_3G018320 Cucumis sativus L. HOM05D006777 ORTHO05D008360 2.2e-06 55.5 28 89.3


User provided reference genes

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