Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 6.4e-174 614.0 315 100.0
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 1.5e-98 363.6 318 62.3
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 3.4e-98 362.5 320 62.5
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 5.8e-98 361.7 320 61.6
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.4e-96 357.1 317 60.6
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 2.0e-95 353.2 314 59.9
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 4.6e-95 352.1 314 59.6
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 7.8e-95 351.3 317 60.3
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 1.3e-94 350.5 313 60.7
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 5.0e-94 348.6 321 59.5
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 4.3e-93 345.5 322 62.4
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 1.2e-92 344.0 319 58.3
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.6e-92 343.6 318 58.5
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.8e-92 342.8 328 57.6
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 1.8e-91 340.1 318 58.5
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 6.8e-91 338.2 318 57.5
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 2.0e-90 336.7 319 57.7
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 2.6e-90 336.3 294 62.2
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 2.6e-90 336.3 279 65.2
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 3.4e-90 335.9 318 57.5
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 4.4e-90 335.5 315 56.8
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.8e-90 335.1 297 59.9
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 2.9e-89 332.8 319 56.7
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 6.4e-89 331.6 316 57.6
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 2.4e-88 329.7 319 58.3
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.2e-87 327.4 315 56.2
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 7.8e-87 324.7 318 55.7
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 1.0e-86 324.3 319 56.4
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 1.3e-86 323.9 320 54.4
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 6.6e-86 321.6 326 55.8
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 6.6e-86 321.6 319 56.1
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 6.6e-86 321.6 323 55.1
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 3.3e-85 319.3 318 55.0
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 3.3e-85 319.3 318 52.8
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 7.3e-85 318.2 324 53.4
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 7.3e-85 318.2 318 55.0
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 9.5e-85 317.8 320 54.7
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.5e-85 317.8 318 54.7
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 2.8e-84 316.2 314 52.5
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 4.7e-84 315.5 316 54.7
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 6.2e-84 315.1 269 63.6
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 8.1e-84 314.7 318 51.9
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 1.1e-83 314.3 295 59.7
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.1e-83 314.3 328 53.7
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.4e-83 313.9 316 57.0
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.4e-83 313.9 319 54.2
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.5e-82 310.5 316 53.5
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 3.4e-82 309.3 315 52.7
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 3.4e-82 309.3 319 53.3
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 4.4e-82 308.9 295 59.0
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 4.4e-82 308.9 415 46.0
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 5.8e-82 308.5 301 56.1
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 1.3e-81 307.4 320 54.4
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 1.3e-81 307.4 322 52.5
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 2.9e-81 306.2 313 53.7
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 2.4e-80 303.1 315 53.0
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 3.2e-80 302.8 316 53.5
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 5.4e-80 302.0 255 62.0
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.6e-79 300.4 317 53.3
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 1.6e-79 300.4 320 54.7
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.7e-79 299.7 255 61.6
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 2.7e-79 299.7 316 52.8
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 7.8e-79 298.1 319 49.8
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 7.8e-79 298.1 318 53.5
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 1.7e-78 297.0 316 55.7
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 2.3e-78 296.6 306 54.2
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 5.1e-78 295.4 312 52.9
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 8.7e-78 294.7 314 54.1
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.9e-77 293.5 317 48.9
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 2.5e-77 293.1 320 50.6
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 3.3e-77 292.7 319 52.4
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 3.3e-77 292.7 319 52.0
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 3.3e-77 292.7 319 51.1
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 5.6e-77 292.0 318 49.7
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 1.2e-76 290.8 321 50.8
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.4e-75 287.3 317 49.5
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.8e-75 287.0 317 48.9
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.8e-75 287.0 320 48.4
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 2.4e-75 286.6 317 49.8
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 2.4e-75 286.6 317 49.8
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 2.4e-75 286.6 312 51.3
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 5.2e-75 285.4 365 48.8
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 5.2e-75 285.4 321 50.5
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 6.9e-75 285.0 317 49.8
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 6.9e-75 285.0 317 49.8
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 6.9e-75 285.0 320 52.2
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 6.9e-75 285.0 318 50.3
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 9.0e-75 284.6 319 48.6
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 9.0e-75 284.6 312 50.6
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 1.2e-74 284.3 317 49.5
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.2e-74 284.3 316 48.4
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.2e-74 284.3 316 48.4
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.2e-74 284.3 316 48.4
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.2e-74 284.3 316 50.3
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 2.0e-74 283.5 317 50.2
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 2.0e-74 283.5 319 47.0
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 2.6e-74 283.1 321 47.7
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 3.4e-74 282.7 323 50.5
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 4.4e-74 282.3 316 48.4
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 7.6e-74 281.6 317 47.9
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 1.3e-73 280.8 317 48.9
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 1.3e-73 280.8 320 48.1
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.3e-73 280.8 322 50.3
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 2.2e-73 280.0 318 50.3
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 3.8e-73 279.3 288 55.6
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 3.8e-73 279.3 337 52.2
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 6.4e-73 278.5 317 48.3
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 6.4e-73 278.5 317 48.3
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 6.4e-73 278.5 317 48.3
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 1.1e-72 277.7 320 47.2
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 1.1e-72 277.7 320 47.2
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 1.9e-72 276.9 326 51.8
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 2.4e-72 276.6 321 49.2
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 4.6e-71 272.3 317 48.3
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 7.8e-71 271.6 312 47.8
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 6.6e-70 268.5 317 47.6
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 8.7e-70 268.1 318 47.2
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 1.9e-69 266.9 262 54.6
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 1.9e-69 266.9 315 47.6
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 1.6e-68 263.8 285 50.9
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 1.4e-67 260.8 316 46.8
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 3.1e-67 259.6 321 46.4
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 5.3e-67 258.8 317 46.7
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 6.9e-67 258.5 284 53.9
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.5e-66 257.3 258 56.6
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 2.0e-66 256.9 320 47.5
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 9.9e-66 254.6 327 47.4
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 2.9e-65 253.1 317 46.4
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 4.9e-65 252.3 318 45.9
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 1.4e-64 250.8 397 43.3
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 4.2e-64 249.2 283 50.5
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 5.4e-64 248.8 317 45.4
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 5.1e-62 242.3 318 45.0
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 6.2e-52 208.8 334 43.1
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 5.5e-48 195.7 315 39.7
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.0e-46 191.4 163 62.0
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 7.4e-45 185.3 226 45.1
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 5.9e-42 175.6 255 40.4
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 8.5e-41 171.8 216 45.4
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 3.6e-39 166.4 321 35.8
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 3.1e-35 153.3 165 49.1
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 2.5e-32 143.7 171 48.0
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 3.6e-31 139.8 315 26.7
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.4e-30 137.9 316 28.5
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 5.1e-30 136.0 181 44.8
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 1.1e-24 118.2 319 31.3
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 5.7e-21 105.9 127 41.7
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.7e-21 105.9 118 48.3
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.7e-20 104.4 127 40.9
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.4e-19 101.3 106 50.0
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.2e-18 98.2 88 55.7
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 5.9e-18 95.9 138 43.5
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.7e-17 94.4 89 57.3
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.7e-17 94.4 89 57.3
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.5e-16 90.5 99 52.5
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 9.7e-13 78.6 68 51.5
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 9.7e-13 78.6 68 51.5
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 6.3e-12 75.9 121 38.8
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 3.1e-11 73.6 68 48.5
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 2.9e-09 67.0 83 37.3
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 3.2e-08 63.5 97 39.2


User provided reference genes

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