Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 3.7e-113 411.8 242 100.0
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 1.4e-80 303.5 224 70.5
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 7.9e-79 297.7 222 71.6
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 5.6e-77 291.6 224 67.9
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 7.3e-77 291.2 224 67.4
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 9.6e-77 290.8 224 67.0
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 1.3e-76 290.4 224 65.6
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 1.3e-76 290.4 228 67.1
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.6e-76 290.0 224 67.4
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 2.1e-76 289.7 224 67.0
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 4.8e-76 288.5 229 68.1
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 4.8e-76 288.5 224 67.4
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 4.8e-76 288.5 224 67.0
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.4e-75 287.0 227 66.1
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.8e-75 286.6 229 65.9
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 5.3e-75 285.0 223 67.3
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 5.3e-75 285.0 233 63.9
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 5.3e-75 285.0 236 63.6
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 6.9e-75 284.6 232 65.9
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 6.9e-75 284.6 224 67.0
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.5e-74 283.5 249 65.1
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.0e-74 283.1 224 66.1
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.5e-74 282.0 221 67.4
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.7e-73 280.0 221 67.4
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.7e-73 280.0 228 65.4
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.2e-73 279.6 224 63.8
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 3.8e-73 278.9 224 64.7
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 4.9e-73 278.5 224 64.3
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 1.9e-72 276.6 229 64.6
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 1.9e-72 276.6 224 64.7
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 2.4e-72 276.2 224 65.6
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 9.3e-72 274.2 224 65.2
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 1.2e-71 273.9 221 63.3
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 1.2e-71 273.9 220 65.0
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 2.1e-71 273.1 224 64.3
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 2.7e-71 272.7 222 63.5
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.7e-71 272.7 224 62.5
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 3.5e-71 272.3 224 60.7
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 4.6e-71 271.9 223 62.3
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 4.6e-71 271.9 224 64.3
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 6.0e-71 271.6 226 61.9
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 7.9e-71 271.2 224 62.1
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 1.0e-70 270.8 224 63.8
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.3e-70 269.6 224 62.1
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 2.3e-70 269.6 224 62.5
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 3.0e-70 269.2 224 62.5
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 3.9e-70 268.9 224 63.4
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.9e-70 268.9 224 59.8
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 5.1e-70 268.5 224 62.1
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.7e-70 268.1 221 65.6
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 8.7e-70 267.7 224 59.8
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 1.5e-69 266.9 222 59.9
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.9e-69 266.5 224 59.8
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 2.5e-69 266.2 242 59.1
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.3e-69 265.8 222 59.5
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 4.3e-69 265.4 224 61.2
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 4.3e-69 265.4 208 64.9
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 5.6e-69 265.0 224 60.3
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 5.6e-69 265.0 224 60.7
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 5.6e-69 265.0 224 60.7
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 5.6e-69 265.0 224 61.2
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 7.4e-69 264.6 224 60.7
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 9.6e-69 264.2 224 60.7
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 2.1e-68 263.1 224 61.6
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 3.7e-68 262.3 224 62.5
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 4.8e-68 261.9 223 61.9
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 4.8e-68 261.9 225 61.3
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 8.1e-68 261.2 224 61.2
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.1e-67 260.8 220 61.4
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 1.1e-67 260.8 224 59.8
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 1.8e-67 260.0 251 57.8
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 2.4e-67 259.6 225 60.9
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 3.1e-67 259.2 223 61.4
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 4.0e-67 258.8 223 59.6
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 6.9e-67 258.1 220 60.9
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 9.0e-67 257.7 223 60.1
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 2.0e-66 256.5 223 58.3
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 3.4e-66 255.8 223 60.5
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 4.5e-66 255.4 224 61.2
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 5.8e-66 255.0 224 61.6
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 7.6e-66 254.6 223 58.7
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 7.6e-66 254.6 213 64.8
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 7.6e-66 254.6 222 60.4
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 7.6e-66 254.6 230 58.7
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 4.9e-65 251.9 273 52.7
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 6.5e-65 251.5 222 59.0
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 6.5e-65 251.5 222 59.5
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 8.4e-65 251.1 231 56.7
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 2.5e-64 249.6 222 59.5
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 3.2e-64 249.2 224 59.4
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 2.1e-63 246.5 221 59.7
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 3.5e-63 245.7 221 57.9
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 7.9e-63 244.6 182 67.0
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 1.8e-62 243.4 229 53.7
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 2.3e-62 243.0 224 59.4
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 5.1e-62 241.9 221 58.8
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 5.1e-62 241.9 229 57.2
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 6.7e-62 241.5 224 57.6
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 1.1e-61 240.7 221 57.9
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.5e-61 240.4 224 57.1
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 2.5e-61 239.6 216 56.9
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 3.3e-61 239.2 224 58.0
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 9.6e-61 237.7 163 73.6
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 1.6e-60 236.9 224 58.0
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 1.4e-59 233.8 221 56.6
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 3.1e-59 232.6 224 56.7
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.2e-58 230.7 224 57.6
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 1.2e-58 230.7 224 56.7
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 1.5e-58 230.3 223 58.7
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 5.0e-57 225.3 227 53.7
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 3.2e-56 222.6 223 50.7
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 2.1e-55 219.9 217 57.1
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 1.3e-54 217.2 163 67.5
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 4.8e-52 208.8 221 53.4
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 9.0e-51 204.5 161 65.8
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 2.6e-50 203.0 170 64.7
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 3.4e-50 202.6 170 64.7
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 3.8e-49 199.1 240 44.2
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.1e-48 197.6 238 45.0
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 7.2e-48 194.9 170 58.2
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.2e-47 194.1 221 50.7
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 2.7e-47 193.0 145 69.0
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.1e-47 191.8 141 69.5
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 7.9e-47 191.4 224 50.0
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 3.0e-46 189.5 155 61.9
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 4.3e-45 185.7 159 61.0
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 7.7e-42 174.9 145 62.1
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.2e-39 167.5 224 45.1
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 5.1e-38 162.2 226 45.1
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 6.7e-38 161.8 186 50.0
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 6.7e-38 161.8 192 47.9
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 2.2e-36 156.8 225 40.9
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 1.6e-34 150.6 115 67.8
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.0e-33 147.9 116 64.7
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.9e-33 146.4 191 45.0
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 3.8e-33 146.0 115 63.5
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 5.5e-32 142.1 221 41.6
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 1.6e-31 140.6 230 41.3
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 8.0e-31 138.3 126 61.9
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.3e-30 136.7 141 54.6
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 2.3e-30 136.7 120 65.0
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 3.7e-28 129.4 224 33.0
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 9.1e-27 124.8 151 47.7
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 9.1e-27 124.8 186 42.5
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 8.5e-25 118.2 181 41.4
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.1e-23 113.6 90 66.7
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 2.7e-23 113.2 224 34.8
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 3.6e-23 112.8 224 36.2
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 1.7e-20 104.0 115 54.8
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 3.7e-20 102.8 70 72.9
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 6.3e-20 102.1 181 43.6
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.8e-19 100.5 170 40.6
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 7.7e-18 95.1 94 48.9
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.9e-16 90.5 79 64.6
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.9e-16 90.5 79 64.6
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 3.2e-16 89.7 140 40.0
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 4.2e-16 89.4 58 72.4
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 4.7e-15 85.9 53 79.2
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 3.0e-14 83.2 52 76.9
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 4.0e-14 82.8 53 77.4
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 4.0e-14 82.8 53 77.4
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.0e-14 82.8 80 57.5
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 5.2e-14 82.4 205 31.2
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 5.2e-14 82.4 205 31.2
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 1.5e-13 80.9 93 45.2
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.6e-13 80.1 84 52.4
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 4.4e-13 79.3 53 69.8
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 5.7e-13 79.0 75 54.7
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.3e-12 77.8 109 44.0
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 2.2e-12 77.0 139 36.0
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 4.9e-12 75.9 80 51.2
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 4.1e-11 72.8 196 30.1
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 4.5e-10 69.3 53 62.3
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 5.9e-10 68.9 82 46.3
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 1.7e-09 67.4 80 45.0
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 3.8e-09 66.2 93 41.9
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 6.6e-09 65.5 78 47.4
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.5e-08 63.5 76 48.7
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 1.4e-06 57.8 76 39.5


User provided reference genes

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