Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 0.0e+00 1758.8 922 100.0
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 1.1e-306 1056.6 927 61.2
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 7.9e-305 1050.4 928 59.8
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.2e-300 1036.6 930 61.1
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 4.2e-290 1001.5 921 57.4
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 4.3e-287 991.5 930 59.2
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 5.3e-285 984.6 936 55.8
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 1.1e-282 976.9 918 57.6
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 6.7e-280 967.6 931 57.4
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 2.6e-279 965.7 929 58.3
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 7.7e-276 954.1 933 58.3
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 8.0e-273 944.1 919 57.1
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 6.7e-272 941.0 933 58.0
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.1e-271 940.3 912 54.8
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 2.6e-271 939.1 938 58.1
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 2.6e-271 939.1 920 55.3
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 1.3e-270 936.8 918 54.6
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 1.4e-269 933.3 919 54.2
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 3.1e-269 932.2 922 54.9
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 3.1e-269 932.2 921 54.4
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 4.1e-269 931.8 942 53.8
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 1.6e-268 929.9 931 57.3
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 5.9e-268 927.9 931 54.0
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 2.5e-266 922.5 928 52.6
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 2.5e-266 922.5 929 55.4
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 5.5e-266 921.4 924 53.2
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 5.5e-266 921.4 918 54.8
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 2.1e-265 919.5 925 53.5
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 2.1e-265 919.5 928 53.2
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 8.0e-265 917.5 921 54.4
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 4.4e-263 911.8 919 55.1
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 9.7e-263 910.6 914 54.8
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 3.7e-262 908.7 917 54.1
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 3.7e-262 908.7 927 53.4
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 8.3e-262 907.5 928 53.9
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 3.1e-261 905.6 930 53.8
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 4.1e-261 905.2 927 53.3
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 1.7e-259 899.8 928 52.6
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 2.2e-259 899.4 922 55.0
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 2.9e-259 899.0 931 52.8
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 1.5e-258 896.7 805 59.0
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 7.2e-258 894.4 934 54.9
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 3.0e-256 889.0 931 52.3
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 2.8e-254 882.5 919 53.0
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 2.3e-251 872.8 928 52.5
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 2.9e-251 872.5 911 52.5
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 7.2e-250 867.8 935 50.8
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 4.7e-249 865.1 995 50.9
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 6.8e-248 861.3 929 49.8
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 8.9e-248 860.9 884 54.3
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 9.8e-247 857.4 930 49.5
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 1.7e-246 856.7 925 50.8
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 2.8e-246 855.9 906 51.7
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 1.1e-245 854.0 926 50.9
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 1.4e-245 853.6 929 50.6
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.4e-245 852.8 927 51.3
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 4.1e-245 852.0 926 50.8
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 9.2e-245 850.9 928 50.6
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 2.3e-243 846.3 923 51.7
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 1.0e-240 837.4 926 51.5
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 1.0e-240 837.4 855 54.2
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 1.0e-240 837.4 912 53.9
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.3e-235 819.7 926 51.1
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 3.0e-235 819.3 924 50.6
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 4.3e-234 815.5 725 59.0
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 4.7e-233 812.0 915 50.8
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 3.4e-231 805.8 918 50.5
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 3.4e-231 805.8 920 50.7
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 2.9e-230 802.7 924 50.1
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 3.7e-230 802.4 931 47.3
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 4.6e-228 795.4 927 49.8
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 1.7e-227 793.5 926 49.7
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 6.6e-227 791.6 923 49.9
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 7.3e-226 788.1 918 50.2
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 2.8e-225 786.2 928 48.0
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.4e-224 783.9 917 49.9
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 5.4e-221 771.9 917 49.4
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 1.6e-220 770.4 924 48.9
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 5.1e-219 765.4 676 58.7
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 3.5e-212 742.7 748 54.3
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 7.8e-212 741.5 1163 41.3
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 3.9e-211 739.2 926 47.4
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 9.6e-210 734.6 950 46.8
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.6e-209 733.8 922 47.3
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 1.1e-208 731.1 715 54.3
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 1.2e-207 727.6 1027 44.6
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 3.4e-207 726.1 772 51.8
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 1.3e-203 714.1 914 46.2
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 1.5e-202 710.7 915 45.4
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 1.2e-199 701.0 708 56.5
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 2.1e-196 690.3 651 56.7
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 7.6e-191 671.8 915 45.1
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 6.0e-188 662.1 839 48.3
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.9e-181 640.6 682 52.8
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 2.7e-180 636.7 494 63.8
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.7e-180 636.7 901 45.1
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.3e-176 622.5 555 59.3
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.8e-161 572.8 443 63.7
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.5e-157 561.2 485 58.8
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 7.7e-151 538.9 917 38.9
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 1.6e-148 531.2 960 36.6
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 2.7e-148 530.4 920 38.7
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 1.3e-137 495.0 414 59.9
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.7e-126 458.0 512 49.2
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 4.3e-125 453.4 921 35.3
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 2.8e-108 397.5 483 46.2
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.4e-106 390.2 482 47.7
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 4.6e-103 380.2 399 53.1
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 8.6e-102 375.9 359 54.3
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 2.5e-101 374.4 478 43.1
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 5.2e-99 366.7 469 46.9
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.9e-97 360.9 222 76.6
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.9e-97 360.9 222 76.6
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 5.8e-90 336.7 472 44.9
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 5.8e-90 336.7 329 53.8
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 3.0e-86 324.3 845 30.1
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 8.1e-84 316.2 255 61.6
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 2.9e-81 307.8 462 43.9
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.5e-77 295.4 301 51.5
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.4e-75 288.1 422 43.4
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 2.4e-75 288.1 271 56.1
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 2.0e-74 285.0 346 50.3
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 1.3e-73 282.3 528 33.9
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 2.1e-71 275.0 395 43.3
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 3.5e-71 274.2 477 40.0
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.5e-65 253.4 463 36.5
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 4.1e-59 234.2 613 30.8
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.5e-58 232.3 246 54.9
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 9.4e-56 223.0 509 31.2
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 2.5e-53 214.9 326 40.2
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 5.7e-53 213.8 385 38.7
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.7e-49 202.2 247 47.0
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 8.5e-49 199.9 221 47.1
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 3.2e-48 198.0 644 27.8
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.3e-46 191.8 176 52.3
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 4.7e-39 167.5 174 48.3
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 4.7e-39 167.5 174 48.3
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.6e-37 161.8 106 69.8
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.8e-36 158.3 240 43.8
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 4.1e-35 154.5 137 49.6
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 1.9e-24 119.0 170 44.7
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 3.2e-24 118.2 133 48.9
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 5.5e-24 117.5 170 44.1
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 1.2e-23 116.3 194 42.8
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 1.4e-22 112.8 78 74.4
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-20 105.1 278 28.8
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 4.9e-20 104.4 661 22.8
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 4.9e-20 104.4 133 44.4
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 8.6e-17 93.6 228 31.6
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.9e-16 92.4 79 58.2
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 8.0e-15 87.0 79 53.2
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 4.4e-13 81.3 102 41.2
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.2e-12 79.0 198 32.3
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 9.2e-11 73.6 45 73.3
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 4.6e-10 71.2 136 35.3
Hma1.2p1_0197F.1_g085110 Hydrangea macrophylla HOM05D004183 ORTHO05D008470 1.0e-09 70.1 46 73.9
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 1.3e-09 69.7 112 35.7
C06p19910 Brassica napus HOM05D016195 ORTHO05D033444 3.1e-06 58.5 81 34.6


User provided reference genes

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