Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 1.6e-103 379.4 189 100.0
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 1.7e-76 289.7 186 75.3
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 1.7e-76 289.7 166 87.3
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 2.4e-75 285.8 186 74.7
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 3.8e-73 278.5 189 70.4
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 5.0e-73 278.1 189 72.5
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 5.0e-73 278.1 189 69.8
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 5.0e-73 278.1 189 69.8
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 1.1e-72 276.9 186 71.0
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 1.1e-72 276.9 189 68.8
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 2.5e-72 275.8 189 69.3
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 9.5e-72 273.9 186 70.4
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 1.4e-70 270.0 189 70.9
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 2.6e-69 265.8 189 69.3
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 2.6e-69 265.8 186 69.4
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 3.4e-69 265.4 185 68.6
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 1.9e-67 259.6 189 67.2
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 4.1e-67 258.5 187 69.0
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 9.2e-67 257.3 189 66.7
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 6.6e-65 251.1 189 66.7
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.1e-64 250.4 187 65.2
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.1e-64 250.4 189 66.1
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 1.9e-64 249.6 189 65.6
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 4.3e-64 248.4 187 65.2
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 9.5e-64 247.3 187 65.2
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 2.8e-63 245.7 187 64.2
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 2.8e-63 245.7 187 65.2
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 4.7e-63 245.0 187 64.2
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.2e-61 240.4 186 65.1
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 3.4e-61 238.8 189 62.4
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 3.4e-61 238.8 189 64.0
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 1.3e-60 236.9 189 63.0
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.7e-60 236.5 189 64.0
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 4.9e-60 235.0 189 64.0
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 3.2e-59 232.3 189 63.5
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 3.2e-59 232.3 189 63.5
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 3.2e-59 232.3 189 63.5
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 3.2e-59 232.3 186 61.8
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 9.2e-59 230.7 189 63.0
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 2.1e-58 229.6 189 61.4
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 2.1e-58 229.6 189 60.3
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 2.7e-58 229.2 206 59.7
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 4.6e-58 228.4 189 60.3
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 6.0e-58 228.0 186 61.3
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 7.8e-58 227.6 150 72.7
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 1.3e-57 226.9 189 60.3
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 1.7e-57 226.5 189 61.9
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 1.7e-57 226.5 189 61.9
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 1.7e-57 226.5 188 60.6
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 3.9e-57 225.3 189 59.3
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 5.1e-57 224.9 189 59.8
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.9e-56 223.0 189 61.9
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.9e-56 223.0 189 63.0
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 2.5e-56 222.6 189 59.3
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.3e-56 222.2 189 61.4
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.3e-56 222.2 189 61.4
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 4.3e-56 221.9 188 60.1
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 4.3e-56 221.9 189 61.4
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 5.6e-56 221.5 185 56.8
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 5.6e-56 221.5 194 58.8
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 7.3e-56 221.1 189 60.8
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 9.5e-56 220.7 189 60.3
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 2.1e-55 219.5 189 58.2
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 2.8e-55 219.2 189 62.4
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 4.7e-55 218.4 189 60.3
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.1e-54 217.2 189 60.8
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 1.4e-54 216.9 177 61.6
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.4e-54 216.9 189 58.7
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 1.2e-53 213.8 185 58.4
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 1.5e-53 213.4 182 57.1
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 1.5e-53 213.4 189 58.2
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 1.5e-53 213.4 186 58.1
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 2.0e-53 213.0 185 58.9
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.6e-53 212.6 185 57.3
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 2.6e-53 212.6 189 56.6
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 3.4e-53 212.2 185 56.8
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 3.4e-53 212.2 185 56.8
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 3.4e-53 212.2 189 56.1
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 3.4e-53 212.2 189 56.6
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 3.4e-53 212.2 189 58.2
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 3.4e-53 212.2 189 57.7
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 4.4e-53 211.8 185 58.4
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 4.4e-53 211.8 186 57.5
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 5.8e-53 211.5 185 56.2
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 5.8e-53 211.5 185 59.5
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 7.5e-53 211.1 189 57.7
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 9.9e-53 210.7 189 57.1
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 2.2e-52 209.5 185 55.7
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.2e-52 209.5 185 58.4
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 2.9e-52 209.1 152 65.8
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 8.3e-52 207.6 187 53.5
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 8.3e-52 207.6 186 55.9
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.4e-51 206.8 174 59.8
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 1.9e-51 206.5 185 57.3
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 1.9e-51 206.5 185 56.2
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 1.9e-51 206.5 189 55.6
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 1.9e-51 206.5 189 55.6
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 3.2e-51 205.7 185 57.8
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 1.6e-50 203.4 189 56.6
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 1.6e-50 203.4 185 56.8
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 2.1e-50 203.0 181 56.9
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 2.7e-50 202.6 186 55.9
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 3.5e-50 202.2 185 56.8
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 3.5e-50 202.2 186 57.5
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 3.5e-50 202.2 186 57.5
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 6.0e-50 201.4 184 56.5
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 7.8e-50 201.1 182 57.1
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 2.3e-49 199.5 189 58.2
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 2.3e-49 199.5 186 54.8
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 3.9e-49 198.7 186 51.1
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 7.3e-48 194.5 186 54.3
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 9.5e-48 194.1 150 66.0
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 2.4e-46 189.5 185 51.9
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 4.0e-46 188.7 187 51.9
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.5e-45 186.8 174 55.2
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 4.4e-45 185.3 210 48.1
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 2.1e-42 176.4 168 56.0
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 6.0e-42 174.9 184 47.3
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 7.3e-40 167.9 185 47.6
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.8e-39 166.0 150 56.7
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 6.2e-39 164.9 201 48.3
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.1e-38 164.1 185 44.3
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 1.1e-38 164.1 189 51.9
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 2.6e-37 159.5 187 43.3
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 5.4e-35 151.8 185 44.9
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.5e-32 142.9 150 50.7
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 1.3e-31 140.6 159 51.6
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 9.3e-27 124.4 121 54.5
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 5.6e-24 115.2 105 52.4
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 1.6e-23 113.6 106 54.7
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 4.5e-21 105.5 100 53.0
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 2.2e-20 103.2 156 40.4
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.9e-20 102.8 106 46.2
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 1.4e-19 100.5 124 46.0
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 1.6e-18 97.1 171 35.7
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 2.7e-18 96.3 188 31.9
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 1.4e-14 84.0 83 59.0
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 2.0e-13 80.1 70 55.7
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 3.4e-13 79.3 72 50.0
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 7.6e-13 78.2 65 58.5
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 3.9e-09 65.9 163 31.3
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 3.7e-07 59.3 177 24.9


User provided reference genes

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