Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g09990 Coffea canephora HOM05D002237 ORTHO05D002213 2.7e-58 228.4 113 100.0
Cc08_g10640 Coffea canephora HOM05D002237 ORTHO05D002213 1.5e-51 206.1 112 92.0
Cc11_g08620 Coffea canephora HOM05D002237 ORTHO05D002213 2.2e-44 182.2 112 84.8
Dinv27989 Davidia involucrata HOM05D002237 ORTHO05D002213 4.1e-30 134.8 112 67.0
MSTRG.25948 Avicennia marina HOM05D002237 ORTHO05D002213 4.4e-24 114.8 113 57.5
Dinv22895 Davidia involucrata HOM05D002237 ORTHO05D002213 5.7e-24 114.4 113 61.1
TWI34G0810 Tripterygium wilfordii HOM05D002237 ORTHO05D002213 4.9e-23 111.3 112 57.1
Hma1.2p1_0482F.1_g162400 Hydrangea macrophylla HOM05D002237 ORTHO05D002213 3.2e-22 108.6 110 59.1
Manes.16G080900 Manihot esculenta HOM05D002237 ORTHO05D002213 3.2e-22 108.6 109 58.7
Ciclev10008860m.g Citrus clementina HOM05D002237 ORTHO05D002213 4.1e-22 108.2 112 58.0
Haze_18179 Corylus avellana HOM05D002237 ORTHO05D002213 4.1e-22 108.2 109 56.9
Haze_18186 Corylus avellana HOM05D002237 ORTHO05D002213 4.1e-22 108.2 109 56.9
TWI63G0889 Tripterygium wilfordii HOM05D002237 ORTHO05D002213 7.0e-22 107.5 111 56.8
Cfa017959 Carpinus fangiana HOM05D002237 ORTHO05D002213 4.6e-21 104.8 111 55.0
FAN20G2042 Fragaria x ananassa HOM05D002237 ORTHO05D002213 4.6e-21 104.8 108 53.7
FAN27G2230 Fragaria x ananassa HOM05D002237 ORTHO05D002213 4.6e-21 104.8 108 53.7
MSTRG.14057 Avicennia marina HOM05D002237 ORTHO05D002213 7.8e-21 104.0 113 54.9
Solyc08g065150.1 Solanum lycopersicum HOM05D002237 ORTHO05D002213 1.0e-20 103.6 121 52.9
Sopen08g018730 Solanum pennellii HOM05D002237 ORTHO05D002213 1.0e-20 103.6 121 52.9
Actinidia26073 Actinidia chinensis HOM05D002237 ORTHO05D002213 1.7e-20 102.8 112 56.2
FAN24G2308 Fragaria x ananassa HOM05D002237 ORTHO05D002213 1.7e-20 102.8 108 54.6
FvH4_2g31830 Fragaria vesca HOM05D002237 ORTHO05D002213 5.0e-20 101.3 108 53.7
CSS0012916 Camellia sinensis var. sinensis HOM05D002237 ORTHO05D002213 8.6e-20 100.5 112 53.6
Oeu059606.1 Olea europaea HOM05D002237 ORTHO05D002213 8.6e-20 100.5 106 61.3
MSTRG.1684 Avicennia marina HOM05D002237 ORTHO05D002213 1.1e-19 100.1 113 50.4
RcHm_v2.0_Chr6g0310991 Rosa chinensis HOM05D002237 ORTHO05D002213 1.5e-19 99.8 111 54.1
MD15G1059100 Malus domestica HOM05D002237 ORTHO05D002213 9.5e-19 97.1 115 53.9
QL02p001128 Quercus lobata HOM05D002237 ORTHO05D002213 9.5e-19 97.1 109 56.0
Nitab4.5_0001367g0050 Nicotiana tabacum HOM05D002237 ORTHO05D002213 1.6e-18 96.3 122 50.0
Nn8g38853 Nelumbo nucifera HOM05D002237 ORTHO05D002213 2.1e-18 95.9 91 60.4
CiPaw.16G028400 Carya illinoinensis HOM05D002237 ORTHO05D002213 2.8e-18 95.5 118 51.7
Prupe.1G411600 Prunus persica HOM05D002237 ORTHO05D002213 2.8e-18 95.5 113 54.0
FAN15G1416 Fragaria x ananassa HOM05D002237 ORTHO05D002213 6.2e-18 94.4 108 52.8
Cpa.g.sc7.182 Carica papaya HOM05D002237 ORTHO05D002213 8.0e-18 94.0 107 52.3
PGSC0003DMG400035559 Solanum tuberosum HOM05D002237 ORTHO05D002213 8.0e-18 94.0 130 47.7
Sabra18G0048700 Salix brachista HOM05D002237 ORTHO05D002213 1.4e-17 93.2 104 54.8
Rhsim11G0044000 Rhododendron simsii HOM05D002237 ORTHO05D002213 1.8e-17 92.8 85 62.4
Lsat_1_v5_gn_6_13421 Lactuca sativa HOM05D002237 ORTHO05D002213 2.0e-16 89.4 100 51.0
CAN.G352.21 Capsicum annuum HOM05D002237 ORTHO05D002213 2.6e-16 89.0 112 49.1
DCAR_000797 Daucus carota HOM05D002237 ORTHO05D002213 2.6e-16 89.0 98 53.1
MELO3C016871.2 Cucumis melo HOM05D002237 ORTHO05D002213 3.4e-16 88.6 113 49.6
Eucgr.C00651 Eucalyptus grandis HOM05D002237 ORTHO05D002213 3.4e-16 88.6 120 45.0
Potri.006G228800 Populus trichocarpa HOM05D002237 ORTHO05D002213 3.4e-16 88.6 111 47.7
SGA_v2.0_scaffold163G38027 Striga asiatica HOM05D002237 ORTHO05D002213 3.4e-16 88.6 120 51.7
CANSAT25G0876 Cannabis sativa HOM05D002237 ORTHO05D002213 4.4e-16 88.2 110 51.8
CSS0026514 Camellia sinensis var. sinensis HOM05D002237 ORTHO05D002213 5.8e-16 87.8 109 54.1
Sed0018033 Sechium edule HOM05D002237 ORTHO05D002213 5.8e-16 87.8 109 47.7
Thecc.09G054200 Theobroma cacao HOM05D002237 ORTHO05D002213 5.8e-16 87.8 114 48.2
Potri.018G053000 Populus trichocarpa HOM05D002237 ORTHO05D002213 9.8e-16 87.0 117 48.7
Migut.E01567 Erythranthe guttata HOM05D002237 ORTHO05D002213 1.3e-15 86.7 121 47.1
Psat6g020080 Pisum sativum HOM05D002237 ORTHO05D002213 2.2e-15 85.9 105 48.6
Aqoxy7G01205 Aquilegia oxysepala HOM05D002237 ORTHO05D002213 2.9e-15 85.5 113 46.9
PGR031G2556 Punica granatum HOM05D002237 ORTHO05D002213 4.9e-15 84.7 109 49.5
CsaV3_4G035640 Cucumis sativus L. HOM05D002237 ORTHO05D002213 8.3e-15 84.0 113 47.8
TPR.G13085 Trifolium pratense HOM05D002237 ORTHO05D002213 8.3e-15 84.0 97 50.5
ClCG05G017870 Citrullus lanatus HOM05D002237 ORTHO05D002213 1.4e-14 83.2 110 50.0
SGA_v2.0_scaffold169G38695 Striga asiatica HOM05D002237 ORTHO05D002213 2.4e-14 82.4 110 49.1
Sc09g0009840 Simmondsia chinensis HOM05D002237 ORTHO05D002213 3.2e-14 82.0 116 49.1
Duzib150G1021 Durio zibethinus HOM05D002237 ORTHO05D002213 4.1e-14 81.6 112 45.5
Gohir.D06G086900 Gossypium hirsutum HOM05D002237 ORTHO05D002213 4.1e-14 81.6 108 45.4
Gorai.010G100300 Gossypium raimondii HOM05D002237 ORTHO05D002213 4.1e-14 81.6 108 45.4
HanXRQChr07g0192621 Helianthus annuus HOM05D002237 ORTHO05D002213 5.4e-14 81.3 106 48.1
Lalb_Chr22g0356091 Lupinus albus HOM05D002237 ORTHO05D002213 1.2e-13 80.1 100 53.0
Medtr1g016100 Medicago truncatula HOM05D002237 ORTHO05D002213 1.2e-13 80.1 92 50.0
Ca_13160_v3 Cicer arietinum L. HOM05D002237 ORTHO05D002213 2.0e-13 79.3 95 51.6
Peaxi162Scf01444g00003 Petunia axillaris HOM05D002237 ORTHO05D002213 4.6e-13 78.2 101 46.5
Sabra06G0177200 Salix brachista HOM05D002237 ORTHO05D002213 4.6e-13 78.2 112 45.5
Eucgr.C03051 Eucalyptus grandis HOM05D002237 ORTHO05D002213 1.7e-12 76.3 108 39.8
HanXRQChr03g0079531 Helianthus annuus HOM05D002237 ORTHO05D002213 1.7e-12 76.3 103 41.7
VMungo0647G2239 Vigna mungo HOM05D002237 ORTHO05D002213 1.7e-12 76.3 85 55.3
Gohir.A06G087500 Gossypium hirsutum HOM05D002237 ORTHO05D002213 3.9e-12 75.1 108 43.5
ECA233G4745 Erigeron canadensis HOM05D002237 ORTHO05D002213 5.0e-12 74.7 82 53.7
vmacro17244 Vaccinium macrocarpon HOM05D002237 ORTHO05D002213 5.0e-12 74.7 83 53.0
Dinv36772 Davidia involucrata HOM05D002237 ORTHO05D002213 8.6e-12 73.9 79 51.9
Nn6g35487 Nelumbo nucifera HOM05D002237 ORTHO05D002213 1.1e-11 73.6 85 52.9
PSO210G0663 Papaver somniferum HOM05D002237 ORTHO05D002213 1.9e-11 72.8 96 46.9
Gorai.001G022700 Gossypium raimondii HOM05D002237 ORTHO05D002213 2.5e-11 72.4 120 43.3
Nitab4.5_0003939g0020 Nicotiana tabacum HOM05D002237 ORTHO05D002213 2.5e-11 72.4 117 43.6
Gohir.A07G022100 Gossypium hirsutum HOM05D002237 ORTHO05D002213 3.3e-11 72.0 120 43.3
SalBow4G0805 Salvia bowleyana HOM05D002237 ORTHO05D002213 3.3e-11 72.0 109 46.8
PSO210G1183 Papaver somniferum HOM05D002237 ORTHO05D002213 7.3e-11 70.9 91 46.2
Thhalv10002336m.g Eutrema salsugineum HOM05D002237 ORTHO05D002213 9.5e-11 70.5 95 46.3
PSO210G3168 Papaver somniferum HOM05D002237 ORTHO05D002213 9.5e-11 70.5 80 47.5
THA.LOC104803728 Tarenaya hassleriana HOM05D002237 ORTHO05D002213 9.5e-11 70.5 98 46.9
Sp4g05990 Schrenkiella parvula HOM05D002237 ORTHO05D002213 1.2e-10 70.1 95 46.3
Rhsim05G0020400 Rhododendron simsii HOM05D002237 ORTHO05D002213 1.6e-10 69.7 83 50.6
Phvul.001G036100 Phaseolus vulgaris HOM05D002237 ORTHO05D002213 2.1e-10 69.3 86 52.3
Glyma.14G095300 Glycine max HOM05D002237 ORTHO05D002213 3.6e-10 68.6 100 49.0
Gohir.D07G022000 Gossypium hirsutum HOM05D002237 ORTHO05D002213 6.2e-10 67.8 120 41.7
Aa31LG5G9660 Aethionema arabicum HOM05D002237 ORTHO05D002213 8.1e-10 67.4 84 47.6
MD02G1080400 Malus domestica HOM05D002237 ORTHO05D002213 8.1e-10 67.4 89 46.1
Nitab4.5_0003648g0010 Nicotiana tabacum HOM05D002237 ORTHO05D002213 8.1e-10 67.4 69 58.0
AL4G18280 Arabidopsis lyrata HOM05D002237 ORTHO05D002213 1.1e-09 67.0 97 43.3
Actinidia39713 Actinidia chinensis HOM05D002237 ORTHO05D002213 1.4e-09 66.6 77 49.4
EL10Ac2g03879 Beta vulgaris HOM05D002237 ORTHO05D002213 1.4e-09 66.6 99 46.5
CARHR114840 Cardamine hirsuta HOM05D002237 ORTHO05D002213 1.4e-09 66.6 103 43.7
Actinidia25249 Actinidia chinensis HOM05D002237 ORTHO05D002213 1.8e-09 66.2 79 51.9
AT2G26110 Arabidopsis thaliana HOM05D002237 ORTHO05D002213 2.3e-09 65.9 100 42.0
Carub.0008s1746 Capsella rubella HOM05D002237 ORTHO05D002213 2.3e-09 65.9 74 47.3
Nitab4.5_0000095g0170 Nicotiana tabacum HOM05D002237 ORTHO05D002213 3.1e-09 65.5 69 56.5
TAR383G0406 Trochodendron aralioides HOM05D002237 ORTHO05D002213 3.1e-09 65.5 102 49.0
MBI01_g16600_MAGBIO Magnolia biondii HOM05D000250 ORTHO05D000625 4.0e-09 65.1 103 37.9
PGR142G4283 Punica granatum HOM05D002237 ORTHO05D002213 8.9e-09 63.9 106 43.4
ATR0749G108 Amborella trichopoda HOM05D002237 ORTHO05D002213 1.2e-08 63.5 87 44.8
Carub.0004s0595 Capsella rubella HOM05D002237 ORTHO05D002213 1.2e-08 63.5 98 41.8
THA.LOC104803792 Tarenaya hassleriana HOM05D002237 ORTHO05D002213 1.5e-08 63.2 84 47.6
Hma1.2p1_0798F.1_g219880 Hydrangea macrophylla HOM05D002237 ORTHO05D002213 2.0e-08 62.8 77 49.4
Atru.chr7.1599 Acer truncatum HOM05D002237 ORTHO05D002213 3.4e-08 62.0 79 48.1
BcaB01g00157 Brassica carinata HOM05D002237 ORTHO05D002213 4.4e-08 61.6 73 50.7
BcaC07g39780 Brassica carinata HOM05D002237 ORTHO05D002213 4.4e-08 61.6 100 41.0
C08p29980 Brassica napus HOM05D002237 ORTHO05D002213 4.4e-08 61.6 100 41.0
BolC8t50607H Brassica oleracea HOM05D002237 ORTHO05D002213 4.4e-08 61.6 100 41.0
BraA09t40233Z Brassica rapa HOM05D002237 ORTHO05D002213 4.4e-08 61.6 97 42.3
COL.COLO4_21062 Corchorus olitorius HOM05D002237 ORTHO05D002213 4.4e-08 61.6 73 53.4
Duzib150G0266 Durio zibethinus HOM05D002237 ORTHO05D002213 4.4e-08 61.6 89 42.7
BcaB05g22304 Brassica carinata HOM05D002237 ORTHO05D002213 5.8e-08 61.2 70 50.0
BcaC03g14188 Brassica carinata HOM05D002237 ORTHO05D002213 5.8e-08 61.2 70 50.0
A02p08820 Brassica napus HOM05D002237 ORTHO05D002213 5.8e-08 61.2 70 50.0
C02p14710 Brassica napus HOM05D002237 ORTHO05D002213 5.8e-08 61.2 70 50.0
BolC2t07596H Brassica oleracea HOM05D002237 ORTHO05D002213 5.8e-08 61.2 70 50.0
BraA02t05949Z Brassica rapa HOM05D002237 ORTHO05D002213 5.8e-08 61.2 70 50.0
CARHR270720 Cardamine hirsuta HOM05D002237 ORTHO05D002213 5.8e-08 61.2 70 52.9
COL.COLO4_18195 Corchorus olitorius HOM05D002237 ORTHO05D002213 5.8e-08 61.2 72 50.0
Peaxi162Scf01461g00029 Petunia axillaris HOM05D002237 ORTHO05D002213 5.8e-08 61.2 69 52.2
A09p47750 Brassica napus HOM05D002237 ORTHO05D002213 7.5e-08 60.8 73 49.3
PSO063G0636 Papaver somniferum HOM05D002237 ORTHO05D002213 7.5e-08 60.8 115 39.1
Sp6g18690 Schrenkiella parvula HOM05D002237 ORTHO05D002213 7.5e-08 60.8 93 43.0
THA.LOC104817760 Tarenaya hassleriana HOM05D002237 ORTHO05D002213 7.5e-08 60.8 104 38.5
BcaC04g20033 Brassica carinata HOM05D002237 ORTHO05D002213 9.9e-08 60.5 74 47.3
Eucgr.C00886 Eucalyptus grandis HOM05D002237 ORTHO05D002213 1.3e-07 60.1 81 43.2
Eucgr.D00713 Eucalyptus grandis HOM05D002237 ORTHO05D002213 1.3e-07 60.1 81 45.7
Lj5g0000472 Lotus japonicus HOM05D002237 ORTHO05D002213 1.3e-07 60.1 107 40.2
Peaxi162Scf00259g00111 Petunia axillaris HOM05D002237 ORTHO05D002213 1.3e-07 60.1 69 52.2
Actinidia39714 Actinidia chinensis HOM05D002237 ORTHO05D002213 2.2e-07 59.3 77 51.9
BcaB08g36030 Brassica carinata HOM05D002237 ORTHO05D002213 2.2e-07 59.3 75 46.7
Manes.16G101500 Manihot esculenta HOM05D002237 ORTHO05D002213 2.2e-07 59.3 84 45.2
PSO832G3506 Papaver somniferum HOM05D002237 ORTHO05D002213 2.2e-07 59.3 122 36.9
CiPaw.15G038600 Carya illinoinensis HOM05D002237 ORTHO05D002213 2.9e-07 58.9 83 45.8
Thhalv10025915m.g Eutrema salsugineum HOM05D002237 ORTHO05D002213 2.9e-07 58.9 95 42.1
A10p14300 Brassica napus HOM05D002237 ORTHO05D002213 3.7e-07 58.5 74 45.9
BraA10t43521Z Brassica rapa HOM05D002237 ORTHO05D002213 3.7e-07 58.5 74 45.9
Manes.03G034300 Manihot esculenta HOM05D002237 ORTHO05D002213 3.7e-07 58.5 105 39.0
BolC9t57710H Brassica oleracea HOM05D002237 ORTHO05D002213 4.9e-07 58.2 74 45.9
Eucgr.C00891 Eucalyptus grandis HOM05D002237 ORTHO05D002213 4.9e-07 58.2 81 43.2
VMungo1309G0962 Vigna mungo HOM05D002237 ORTHO05D002213 4.9e-07 58.2 88 38.6
Thhalv10013847m.g Eutrema salsugineum HOM05D002237 ORTHO05D002213 6.4e-07 57.8 74 44.6
Lsat_1_v5_gn_7_37001 Lactuca sativa HOM05D002237 ORTHO05D002213 6.4e-07 57.8 83 45.8
CiPaw.03G215700 Carya illinoinensis HOM05D002237 ORTHO05D002213 8.3e-07 57.4 97 38.1
Duzib168G2392 Durio zibethinus HOM05D002237 ORTHO05D002213 8.3e-07 57.4 84 42.9
Aa31LG3G12870 Aethionema arabicum HOM05D002237 ORTHO05D002213 1.1e-06 57.0 89 39.3
CiPaw.03G215500 Carya illinoinensis HOM05D002237 ORTHO05D002213 1.1e-06 57.0 89 39.3
Oeu036333.1 Olea europaea HOM05D002237 ORTHO05D002213 1.1e-06 57.0 112 40.2
Prupe.7G209100 Prunus persica HOM05D002237 ORTHO05D002213 1.1e-06 57.0 76 42.1
AT4G26130 Arabidopsis thaliana HOM05D002237 ORTHO05D002213 1.4e-06 56.6 95 37.9
MD08G1062500 Malus domestica HOM05D002237 ORTHO05D002213 1.4e-06 56.6 93 39.8
AL52U10060 Arabidopsis lyrata HOM05D002237 ORTHO05D002213 1.9e-06 56.2 70 50.0
AT5G56980 Arabidopsis thaliana HOM05D002237 ORTHO05D002213 1.9e-06 56.2 70 48.6
AL8G32850 Arabidopsis lyrata HOM05D002237 ORTHO05D002213 5.4e-06 54.7 70 48.6
MSTRG.6063 Avicennia marina HOM05D002237 ORTHO05D002213 5.4e-06 54.7 79 48.1
Lsat_1_v5_gn_5_47580 Lactuca sativa HOM05D002237 ORTHO05D002213 5.4e-06 54.7 113 34.5
Carub.0007s1482 Capsella rubella HOM05D002237 ORTHO05D002213 7.1e-06 54.3 95 37.9
VMungo1215G3160 Vigna mungo HOM05D002237 ORTHO05D002213 7.1e-06 54.3 72 45.8
QL02p062593 Quercus lobata HOM05D002237 ORTHO05D002213 9.2e-06 53.9 77 45.5
THA.LOC104811745 Tarenaya hassleriana HOM05D002237 ORTHO05D002213 9.2e-06 53.9 96 39.6


User provided reference genes

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