Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 9.4e-300 1033.1 667 100.0
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 1.0e-56 225.7 646 39.8
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 2.3e-56 224.6 280 53.6
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 7.0e-53 213.0 592 42.9
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 9.2e-53 212.6 174 67.2
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 7.8e-52 209.5 211 61.6
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 1.7e-51 208.4 173 67.6
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.3e-51 208.0 392 45.2
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.8e-51 207.2 272 53.7
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 5.0e-51 206.8 173 67.1
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 1.5e-50 205.3 224 57.1
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 7.3e-50 203.0 241 54.8
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 9.5e-50 202.6 256 52.7
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 1.8e-48 198.4 176 64.8
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 2.3e-48 198.0 175 64.0
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 3.0e-48 197.6 176 69.9
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 3.0e-48 197.6 216 56.9
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 4.0e-48 197.2 149 71.1
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 4.0e-48 197.2 310 47.7
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 6.8e-48 196.4 151 70.9
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 8.9e-48 196.1 222 55.4
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 1.5e-47 195.3 193 60.1
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 2.6e-47 194.5 208 57.7
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 4.4e-47 193.7 282 50.4
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 4.4e-47 193.7 237 52.7
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 7.5e-47 193.0 208 55.3
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 1.3e-46 192.2 304 47.0
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 1.7e-46 191.8 268 49.6
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 3.7e-46 190.7 234 56.4
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 3.7e-46 190.7 247 51.4
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 3.7e-46 190.7 247 51.4
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 6.4e-46 189.9 260 50.0
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 1.4e-45 188.7 389 41.1
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 3.2e-45 187.6 242 50.8
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 7.0e-45 186.4 326 45.4
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 9.2e-45 186.0 265 49.4
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 9.2e-45 186.0 244 48.0
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 9.2e-45 186.0 149 67.8
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.2e-44 185.7 269 47.6
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.7e-44 184.5 152 67.8
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.7e-44 184.5 152 67.1
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 2.7e-44 184.5 277 48.0
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.5e-44 184.1 152 66.4
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.5e-44 184.1 185 60.0
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 5.9e-44 183.3 644 32.9
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 7.8e-44 183.0 269 46.1
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 1.7e-43 181.8 253 47.4
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.7e-43 181.8 272 46.7
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 2.3e-43 181.4 212 53.3
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 3.0e-43 181.0 244 52.5
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.0e-43 180.3 160 61.9
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.1e-42 179.1 279 46.2
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 1.9e-42 178.3 256 50.4
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 2.5e-42 177.9 213 52.1
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 2.5e-42 177.9 553 43.2
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 3.3e-42 177.6 298 45.0
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 3.3e-42 177.6 207 52.7
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.6e-41 175.3 152 64.5
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 2.1e-41 174.9 222 50.0
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 2.8e-41 174.5 207 50.2
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 2.8e-41 174.5 232 50.4
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 4.7e-41 173.7 241 46.9
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 6.2e-41 173.3 152 63.8
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 1.8e-40 171.8 149 63.8
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.8e-40 171.8 275 46.2
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 2.3e-40 171.4 103 85.4
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.1e-40 171.0 222 49.5
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 3.1e-40 171.0 151 61.6
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 5.2e-40 170.2 221 49.3
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.2e-40 170.2 241 48.1
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 6.8e-40 169.9 103 81.6
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 1.2e-39 169.1 150 62.0
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 2.0e-39 168.3 260 46.2
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 4.4e-39 167.2 222 48.2
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 4.4e-39 167.2 565 38.6
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 4.4e-39 167.2 149 61.7
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 7.5e-39 166.4 212 49.5
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 7.5e-39 166.4 208 49.0
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 9.8e-39 166.0 245 45.7
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 9.8e-39 166.0 241 47.3
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 1.3e-38 165.6 226 46.9
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 1.3e-38 165.6 226 46.9
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.3e-38 165.6 176 53.4
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.9e-38 164.5 257 47.1
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 6.4e-38 163.3 103 81.6
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 8.3e-38 162.9 212 49.1
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 1.1e-37 162.5 103 81.6
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 1.1e-37 162.5 103 78.6
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 1.1e-37 162.5 229 46.7
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 1.1e-37 162.5 156 58.3
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 1.4e-37 162.2 103 78.6
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 1.4e-37 162.2 103 80.6
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.9e-37 161.8 165 55.2
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 2.4e-37 161.4 225 48.4
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.4e-37 161.4 548 40.7
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 2.4e-37 161.4 216 50.9
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 2.4e-37 161.4 262 44.7
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 5.4e-37 160.2 263 44.1
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 7.0e-37 159.8 224 49.6
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 1.2e-36 159.1 239 47.7
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.2e-36 159.1 136 63.2
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 1.6e-36 158.7 102 77.5
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.3e-35 155.6 103 78.6
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 5.0e-35 153.7 247 46.6
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 8.6e-35 152.9 201 46.8
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 8.6e-35 152.9 103 73.8
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 1.1e-34 152.5 407 36.1
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 2.5e-34 151.4 169 50.9
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 4.3e-34 150.6 519 34.9
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 2.6e-31 141.4 569 39.4
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 3.4e-31 141.0 568 35.2
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 4.4e-31 140.6 94 79.8
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 1.7e-30 138.7 605 34.5
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 6.4e-30 136.7 141 56.0
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.1e-29 136.0 132 60.6
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 1.2e-28 132.5 90 74.4
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 1.6e-28 132.1 289 38.1
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 6.0e-28 130.2 92 69.6
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 3.0e-27 127.9 202 47.5
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 3.9e-27 127.5 154 51.3
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 3.9e-27 127.5 154 51.3
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 4.3e-26 124.0 102 63.7
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 7.3e-26 123.2 102 60.8
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 9.5e-26 122.9 250 41.6
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.8e-25 121.3 165 46.1
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 4.7e-25 120.6 102 63.7
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 1.8e-24 118.6 82 72.0
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.3e-24 118.2 105 64.8
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.3e-24 118.2 101 61.4
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 4.0e-24 117.5 105 64.8
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 1.5e-23 115.5 232 40.1
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 5.8e-23 113.6 238 38.7
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 9.9e-23 112.8 103 57.3
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 1.3e-22 112.5 109 59.6
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 8.4e-22 109.8 108 57.4
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.9e-21 108.6 149 43.6
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 1.9e-21 108.6 108 58.3
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 5.4e-21 107.1 109 56.9
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 9.2e-21 106.3 105 58.1
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 1.2e-20 105.9 108 56.5
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.6e-20 105.5 108 56.5
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 4.6e-20 104.0 104 55.8
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.7e-19 102.1 105 57.1
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.9e-18 98.6 105 54.3
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 7.3e-18 96.7 160 42.5
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 7.3e-18 96.7 174 39.7
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 2.8e-17 94.7 116 50.0
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.8e-16 92.0 179 39.1
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 3.4e-15 87.8 103 46.6
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 5.8e-15 87.0 108 45.4
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 2.9e-14 84.7 98 51.0
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 4.9e-14 84.0 49 83.7
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 2.4e-13 81.6 49 81.6
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 7.1e-13 80.1 150 39.3
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 7.8e-12 76.6 68 58.8
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.3e-11 75.9 54 68.5
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 1.7e-11 75.5 95 44.2
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 3.0e-11 74.7 212 38.2
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 5.1e-11 73.9 96 45.8
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 1.5e-10 72.4 85 50.6
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 6.9e-08 63.5 69 50.7
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 1.2e-07 62.8 169 29.0
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 2.6e-07 61.6 65 50.8


User provided reference genes

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