Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 3.6e-211 738.4 507 100.0
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 1.5e-84 317.8 452 64.8
Dinv32167 Davidia involucrata HOM05D007897 ORTHO05D010061 7.1e-82 308.9 478 64.0
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 5.7e-79 299.3 412 68.9
TAR633G2792 Trochodendron aralioides HOM05D007897 ORTHO05D010061 5.7e-79 299.3 500 61.6
QL06p027281 Quercus lobata HOM05D007897 ORTHO05D010061 1.1e-77 295.0 410 70.0
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 9.0e-77 292.0 413 68.0
Gohir.D09G201400 Gossypium hirsutum HOM05D007897 ORTHO05D010061 2.0e-76 290.8 414 61.4
TAR633G2399 Trochodendron aralioides HOM05D007897 ORTHO05D010061 4.5e-76 289.7 466 64.2
Gorai.006G225200 Gossypium raimondii HOM05D007897 ORTHO05D010061 6.5e-75 285.8 414 60.9
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 4.2e-74 283.1 450 63.6
Ciclev10004784m.g Citrus clementina HOM05D007897 ORTHO05D010061 5.5e-74 282.7 413 68.0
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 2.7e-73 280.4 414 58.9
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 4.6e-73 279.6 500 59.8
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 4.6e-73 279.6 440 53.9
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 3.9e-72 276.6 440 53.6
Cpa.g.sc157.16 Carica papaya HOM05D007897 ORTHO05D010061 4.8e-70 269.6 413 65.6
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 1.1e-69 268.5 413 68.8
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 3.1e-69 266.9 408 67.9
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 5.3e-69 266.2 413 68.5
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 2.0e-68 264.2 409 65.5
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 2.6e-68 263.8 390 59.2
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 5.0e-67 259.6 415 66.0
CARHR220230 Cardamine hirsuta HOM05D007897 ORTHO05D010061 5.0e-67 259.6 459 57.7
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 8.5e-67 258.8 411 65.2
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 1.9e-66 257.7 425 65.9
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 1.9e-66 257.7 413 66.8
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 7.2e-66 255.8 409 67.5
RcHm_v2.0_Chr4g0412521 Rosa chinensis HOM05D007897 ORTHO05D010061 7.2e-66 255.8 428 64.0
THA.LOC104808674 Tarenaya hassleriana HOM05D007897 ORTHO05D010061 1.6e-65 254.6 420 64.3
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 2.7e-65 253.8 413 64.6
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 3.6e-65 253.4 371 70.9
FvH4_4g12861 Fragaria vesca HOM05D007897 ORTHO05D010061 6.1e-65 252.7 455 61.1
AL7G42190 Arabidopsis lyrata HOM05D007897 ORTHO05D010061 3.9e-64 250.0 432 60.0
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.5e-63 248.1 364 72.3
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.0e-63 247.7 455 60.7
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 3.3e-63 246.9 411 64.7
AT4G14190 Arabidopsis thaliana HOM05D007897 ORTHO05D010061 9.7e-63 245.4 454 59.7
Thhalv10027442m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 9.7e-63 245.4 487 56.5
HanXRQChr01g0022031 Helianthus annuus HOM05D007897 ORTHO05D010061 2.2e-62 244.2 456 55.9
HanXRQChr17g0535531 Helianthus annuus HOM05D007897 ORTHO05D010061 3.7e-62 243.4 493 54.2
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 2.4e-61 240.7 493 51.9
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 6.9e-61 239.2 413 54.2
CiPaw.02G062400 Carya illinoinensis HOM05D007897 ORTHO05D010061 9.1e-61 238.8 371 70.9
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 1.2e-60 238.4 162 71.6
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 3.4e-60 236.9 451 61.6
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 4.5e-60 236.5 461 47.7
BcaB08g35766 Brassica carinata HOM05D007897 ORTHO05D010061 7.7e-60 235.7 411 58.9
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 3.8e-59 233.4 411 63.7
Carub.0007s2820 Capsella rubella HOM05D007897 ORTHO05D010061 5.0e-59 233.0 413 59.1
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 5.0e-59 233.0 469 45.4
Sp6g16180 Schrenkiella parvula HOM05D007897 ORTHO05D010061 1.9e-58 231.1 410 61.5
C09p44340 Brassica napus HOM05D007897 ORTHO05D010061 5.5e-58 229.6 412 59.2
BolC9t57304H Brassica oleracea HOM05D007897 ORTHO05D010061 7.2e-58 229.2 412 60.0
Lsat_1_v5_gn_1_70121 Lactuca sativa HOM05D007897 ORTHO05D010061 9.4e-58 228.8 416 54.8
Glyma.11G253700 Glycine max HOM05D007897 ORTHO05D010061 3.9e-56 223.4 411 63.5
A10p11440 Brassica napus HOM05D007897 ORTHO05D010061 6.7e-56 222.6 412 59.7
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 8.8e-56 222.2 371 65.8
Gohir.A09G207900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.5e-55 221.5 184 60.9
BraA10t43238Z Brassica rapa HOM05D007897 ORTHO05D010061 7.4e-55 219.2 412 59.2
Aa31LG9G3200 Aethionema arabicum HOM05D007897 ORTHO05D010061 9.7e-55 218.8 498 55.2
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 5.3e-53 213.0 376 63.6
Atru.chr3.1764 Acer truncatum HOM05D007897 ORTHO05D010061 2.6e-52 210.7 174 59.2
FAN22G1341 Fragaria x ananassa HOM05D007897 ORTHO05D010061 4.0e-48 196.8 173 57.8
BcaC04g20377 Brassica carinata HOM05D007897 ORTHO05D010061 6.3e-46 189.5 412 55.6
HPP92_007232 Vanilla planifolia HOM05D007897 ORTHO05D010061 2.6e-39 167.5 407 57.0
Manes.05G199032 Manihot esculenta HOM05D007897 ORTHO05D010061 3.6e-33 147.1 276 75.0
arahy.Tifrunner.gnm1.ann1.EZRM4Y Arachis hypogaea HOM05D007897 ORTHO05D010061 3.7e-30 137.1 306 69.6
Prupe.1G171300 Prunus persica HOM05D007897 ORTHO05D010061 2.6e-23 114.4 279 72.4
HanXRQChr09g0243521 Helianthus annuus HOM05D007897 ORTHO05D010061 1.0e-19 102.4 125 46.4
Thhalv10027431m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 2.1e-17 94.7 96 47.9
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 3.4e-15 87.4 185 32.4
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 3.7e-14 84.0 181 33.1
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 1.9e-13 81.6 181 32.6
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 3.2e-13 80.9 179 33.5
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 4.1e-13 80.5 180 33.9
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 4.1e-13 80.5 181 32.6
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 4.1e-13 80.5 182 33.0
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 7.0e-13 79.7 181 32.6
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 9.2e-13 79.3 181 31.5
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 9.2e-13 79.3 181 32.6
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 9.2e-13 79.3 182 31.9
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 9.2e-13 79.3 181 33.1
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 1.6e-12 78.6 179 31.8
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 1.6e-12 78.6 181 32.6
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 2.0e-12 78.2 182 33.5
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 3.5e-12 77.4 184 31.0
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 3.5e-12 77.4 179 31.8
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 3.5e-12 77.4 179 31.8
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 3.5e-12 77.4 181 33.1
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 4.6e-12 77.0 179 31.3
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 4.6e-12 77.0 179 31.8
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 4.6e-12 77.0 185 33.0
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 4.6e-12 77.0 181 32.0
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 6.0e-12 76.6 388 42.0
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 6.0e-12 76.6 181 30.9
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 6.0e-12 76.6 179 32.4
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 6.0e-12 76.6 179 29.6
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 6.0e-12 76.6 186 32.3
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 7.8e-12 76.3 181 32.0
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 7.8e-12 76.3 187 32.6
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.0e-11 75.9 181 31.5
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 1.3e-11 75.5 179 30.7
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 1.3e-11 75.5 184 32.1
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 1.3e-11 75.5 179 30.7
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 1.3e-11 75.5 179 30.7
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 1.3e-11 75.5 181 32.0
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 2.3e-11 74.7 179 30.7
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 2.3e-11 74.7 181 31.5
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 3.9e-11 73.9 179 31.8
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 3.9e-11 73.9 186 30.6
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 5.0e-11 73.6 179 30.7
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 5.0e-11 73.6 187 31.0
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 5.0e-11 73.6 184 29.9
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 5.0e-11 73.6 186 31.2
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 5.0e-11 73.6 181 30.9
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 6.6e-11 73.2 183 31.1
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 6.6e-11 73.2 179 30.2
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 6.6e-11 73.2 179 30.7
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 6.6e-11 73.2 179 30.7
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 8.6e-11 72.8 179 29.1
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 1.1e-10 72.4 179 29.6
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.1e-10 72.4 183 30.6
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 1.1e-10 72.4 184 30.4
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 1.1e-10 72.4 179 31.3
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 1.5e-10 72.0 181 31.5
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 1.9e-10 71.6 179 29.1
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 1.9e-10 71.6 179 28.5
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 1.9e-10 71.6 179 29.1
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 1.9e-10 71.6 179 29.1
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 1.9e-10 71.6 182 31.3
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 1.9e-10 71.6 179 30.7
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 1.9e-10 71.6 179 30.2
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 1.9e-10 71.6 179 29.6
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 1.9e-10 71.6 181 30.9
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 1.9e-10 71.6 184 31.5
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 2.5e-10 71.2 179 29.6
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 2.5e-10 71.2 190 29.5
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 2.5e-10 71.2 179 29.6
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 4.3e-10 70.5 182 29.7
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 4.3e-10 70.5 181 30.4
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 4.3e-10 70.5 179 27.9
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 4.3e-10 70.5 179 29.6
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 4.3e-10 70.5 179 30.7
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 5.6e-10 70.1 179 30.2
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 7.3e-10 69.7 179 29.6
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 9.5e-10 69.3 179 29.1
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 9.5e-10 69.3 179 29.6
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 1.2e-09 68.9 179 28.5
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 1.2e-09 68.9 139 31.7
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 1.6e-09 68.6 179 29.1
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 1.6e-09 68.6 179 29.6
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 2.1e-09 68.2 179 28.5
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 2.1e-09 68.2 182 30.2
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 2.1e-09 68.2 445 33.0
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 3.6e-09 67.4 181 30.4
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 4.7e-09 67.0 179 27.9
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 4.7e-09 67.0 179 29.1
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 4.7e-09 67.0 179 29.1
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 6.2e-09 66.6 179 29.1
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 6.2e-09 66.6 153 30.1
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 2.3e-08 64.7 179 29.6
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 2.3e-08 64.7 179 29.1
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 6.8e-08 63.2 176 27.8
A02p10540 Brassica napus HOM05D007897 ORTHO05D010061 3.4e-07 60.8 63 44.4
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.3e-06 58.9 103 33.0
HanXRQChr09g0243531 Helianthus annuus HOM05D007897 ORTHO05D010061 1.7e-06 58.5 73 37.0
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 6.4e-06 56.6 123 32.5


User provided reference genes

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