Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 0.0e+00 2530.7 1296 100.0
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1414.8 1296 57.6
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1375.1 1283 55.5
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 0.0e+00 1370.1 1284 56.2
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 0.0e+00 1365.5 1304 56.1
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1361.3 1280 55.9
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1340.5 1293 53.6
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 0.0e+00 1334.7 1291 54.5
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1330.9 1293 53.4
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1318.1 1288 52.8
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1316.2 1281 53.0
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 0.0e+00 1309.3 1330 54.4
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 0.0e+00 1305.4 1349 53.2
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 0.0e+00 1301.6 1294 53.3
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1292.3 1285 53.3
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1291.2 1280 53.6
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1285.8 1288 52.3
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 0.0e+00 1283.1 1153 57.4
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 0.0e+00 1278.8 1311 52.8
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1277.7 1307 52.2
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1273.1 1295 53.1
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 0.0e+00 1272.7 1152 57.0
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1266.1 1295 52.6
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 0.0e+00 1260.0 1283 52.4
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1256.1 1397 48.8
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1239.2 1283 51.1
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1236.9 1278 51.2
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1227.6 1277 50.9
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 0.0e+00 1223.0 1258 52.9
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1218.4 1302 50.0
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1216.8 1289 50.7
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1206.0 1159 53.4
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 0.0e+00 1201.4 1311 49.9
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 0.0e+00 1194.5 1280 50.2
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1191.4 1295 49.5
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 0.0e+00 1189.5 1281 49.6
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 0.0e+00 1184.5 1281 50.7
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1176.4 1272 49.8
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1175.6 1275 49.6
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1174.5 1288 48.4
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1172.9 1281 49.0
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1169.8 1295 48.9
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1153.7 1277 47.5
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1151.3 1281 47.2
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1147.5 1281 47.7
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1143.3 1275 48.6
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1140.9 1289 47.7
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1139.8 1282 47.0
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1124.0 1286 47.7
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 1115.1 1290 47.2
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1111.3 1282 46.3
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 0.0e+00 1108.6 1314 47.1
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1105.5 1283 46.6
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 0.0e+00 1092.0 1295 47.3
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1091.3 1282 45.9
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 0.0e+00 1090.9 1151 50.1
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 0.0e+00 1083.9 1286 46.3
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 0.0e+00 1082.8 1299 44.9
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 0.0e+00 1078.9 1138 51.5
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.1e-309 1067.0 1010 55.8
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 1.5e-309 1066.6 1286 44.8
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 2.0e-306 1056.2 1290 43.8
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 7.7e-306 1054.3 1056 52.0
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 2.2e-305 1052.7 1169 48.8
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 5.0e-305 1051.6 1292 45.4
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 3.2e-304 1048.9 1294 44.4
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 2.1e-303 1046.2 1299 44.8
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 5.7e-301 1038.1 1291 43.6
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 6.3e-300 1034.6 1282 44.4
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 1.4e-299 1033.5 1301 43.1
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 3.0e-294 1015.8 1039 50.9
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 1.5e-293 1013.4 1261 44.6
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 2.4e-291 1006.1 1129 47.8
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 7.7e-290 1001.1 1300 42.3
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 1.5e-288 996.9 1291 42.5
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 3.6e-287 992.3 1291 42.4
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 3.6e-287 992.3 1291 42.4
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 4.4e-285 985.3 1319 41.5
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 3.1e-283 979.2 895 55.6
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 2.5e-280 969.5 1276 43.2
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 2.4e-275 953.0 1216 45.3
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 1.0e-270 937.6 1124 45.8
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 1.7e-265 920.2 1204 43.4
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 3.6e-263 912.5 1247 42.9
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 4.0e-262 909.1 1289 40.3
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 5.0e-257 892.1 758 59.9
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 1.2e-237 827.8 867 51.7
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 4.2e-227 792.7 1124 40.3
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 2.4e-222 776.9 1151 39.4
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 5.5e-219 765.8 766 53.5
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 4.3e-216 756.1 1054 42.0
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 1.1e-214 751.5 1036 42.8
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 3.7e-199 699.9 841 44.4
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 3.3e-192 676.8 1354 34.3
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 8.2e-191 672.2 1005 38.7
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 1.4e-182 644.8 795 44.0
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 2.2e-164 584.3 498 62.4
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 4.0e-161 573.5 462 64.3
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 6.8e-161 572.8 716 46.4
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 1.3e-156 558.5 654 45.4
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 4.6e-149 533.5 647 47.9
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 1.9e-147 528.1 582 47.8
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 2.9e-119 434.5 652 38.7
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 3.8e-119 434.1 400 57.2
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 9.3e-110 402.9 466 47.4
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 1.2e-104 386.0 1264 27.0
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.8e-100 372.1 480 42.7
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 4.0e-97 360.9 357 53.2
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 6.9e-97 360.1 1284 26.3
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 4.6e-77 294.3 610 36.2
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.7e-71 275.8 387 38.8
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.7e-63 249.2 380 38.4
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 1.6e-61 242.7 392 37.0
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 6.7e-60 237.3 286 46.5
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 3.1e-41 175.3 184 52.2
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 3.5e-40 171.8 171 53.2
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 1.2e-35 156.8 138 55.8
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 2.7e-32 145.6 138 54.3
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 1.7e-31 142.9 208 38.0
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 3.9e-31 141.7 194 40.7
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 8.0e-29 134.0 139 51.8
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 1.8e-28 132.9 116 59.5
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 2.3e-28 132.5 141 47.5
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 4.0e-20 105.1 108 50.9
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 3.4e-19 102.1 124 48.4
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 7.5e-19 100.9 128 46.1
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 2.7e-16 92.4 428 21.5
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 8.9e-12 77.4 71 52.1
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 3.4e-11 75.5 65 56.9
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 3.4e-11 75.5 120 40.8
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 6.6e-07 61.2 59 59.3


User provided reference genes

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