Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g08980 Coffea canephora HOM05D002511 ORTHO05D154327 3.0e-60 235.0 118 100.0
Cc02_g26650 Coffea canephora HOM05D002511 ORTHO05D013388 1.2e-29 133.3 113 68.1
Cc03_g07730 Coffea canephora HOM05D002511 ORTHO05D003982 2.1e-24 115.9 112 63.4
TWI53G1146 Tripterygium wilfordii HOM05D002511 ORTHO05D003982 1.5e-19 99.8 112 56.2
arahy.Tifrunner.gnm1.ann1.51XJUZ Arachis hypogaea HOM05D002511 ORTHO05D003982 2.0e-19 99.4 112 54.5
DCAR_026606 Daucus carota HOM05D002511 ORTHO05D003982 2.6e-19 99.0 112 58.9
GSVIVG01003914001 Vitis vinifera HOM05D002511 ORTHO05D003982 3.4e-19 98.6 112 55.4
arahy.Tifrunner.gnm1.ann1.KIW01B Arachis hypogaea HOM05D002511 ORTHO05D003982 2.9e-18 95.5 110 53.6
GSVIVG01026206001 Vitis vinifera HOM05D002511 ORTHO05D003982 2.9e-18 95.5 112 53.6
QL06p024292 Quercus lobata HOM05D002511 ORTHO05D003982 3.8e-18 95.1 112 55.4
Atru.chr4.1717 Acer truncatum HOM05D002511 ORTHO05D003982 4.9e-18 94.7 113 54.0
Aa31LG1G20070 Aethionema arabicum HOM05D002511 ORTHO05D003982 4.9e-18 94.7 112 53.6
CANSAT78G0567 Cannabis sativa HOM05D002511 ORTHO05D003982 6.4e-18 94.4 113 54.0
Cpa.g.sc59.130 Carica papaya HOM05D002511 ORTHO05D003982 6.4e-18 94.4 113 53.1
CiPaw.01G122300 Carya illinoinensis HOM05D002511 ORTHO05D003982 6.4e-18 94.4 112 54.5
Manes.03G148600 Manihot esculenta HOM05D002511 ORTHO05D003982 6.4e-18 94.4 113 53.1
TWI73G0115 Tripterygium wilfordii HOM05D002511 ORTHO05D003982 6.4e-18 94.4 112 53.6
Rhsim02G0056700 Rhododendron simsii HOM05D002511 ORTHO05D003982 8.4e-18 94.0 112 56.2
THA.LOC104801046 Tarenaya hassleriana HOM05D002511 ORTHO05D003982 8.4e-18 94.0 112 53.6
Aa31LG5G4390 Aethionema arabicum HOM05D002511 ORTHO05D003982 1.1e-17 93.6 112 52.7
Ciclev10004239m.g Citrus clementina HOM05D002511 ORTHO05D003982 1.1e-17 93.6 113 54.0
MELO3C020453.2 Cucumis melo HOM05D002511 ORTHO05D003982 1.1e-17 93.6 113 54.0
Nitab4.5_0002428g0010 Nicotiana tabacum HOM05D002511 ORTHO05D003982 1.1e-17 93.6 113 54.9
Cfa014923 Carpinus fangiana HOM05D002511 ORTHO05D003982 1.4e-17 93.2 112 54.5
Haze_11600 Corylus avellana HOM05D002511 ORTHO05D003982 1.4e-17 93.2 112 54.5
CsaV3_2G011480 Cucumis sativus L. HOM05D002511 ORTHO05D003982 1.4e-17 93.2 113 54.0
Lalb_Chr09g0330731 Lupinus albus HOM05D002511 ORTHO05D003982 1.4e-17 93.2 112 54.5
CiPaw.02G066800 Carya illinoinensis HOM05D002511 ORTHO05D003982 1.9e-17 92.8 112 54.5
Carub.0001s0406 Capsella rubella HOM05D002511 ORTHO05D003982 2.4e-17 92.4 112 52.7
ClCG06G007710 Citrullus lanatus HOM05D002511 ORTHO05D003982 2.4e-17 92.4 113 51.3
SHI27697 Sapria himalayana HOM05D000105 ORTHO05D000023 2.4e-17 92.4 112 49.1
MSTRG.9820 Avicennia marina HOM05D002511 ORTHO05D003982 3.2e-17 92.0 113 56.6
Psat7g004760 Pisum sativum HOM05D002511 ORTHO05D003982 3.2e-17 92.0 113 52.2
TAR365G0717 Trochodendron aralioides HOM05D002511 ORTHO05D013388 3.2e-17 92.0 113 54.9
AL1G14530 Arabidopsis lyrata HOM05D002511 ORTHO05D003982 4.2e-17 91.7 112 51.8
CARHR004210 Cardamine hirsuta HOM05D002511 ORTHO05D003982 4.2e-17 91.7 112 52.7
Duzib212G0245 Durio zibethinus HOM05D002511 ORTHO05D003982 4.2e-17 91.7 113 54.0
THA.LOC104826112 Tarenaya hassleriana HOM05D002511 ORTHO05D003982 4.2e-17 91.7 112 52.7
Thecc.04G205300 Theobroma cacao HOM05D002511 ORTHO05D003982 4.2e-17 91.7 113 53.1
AT1G04810 Arabidopsis thaliana HOM05D002511 ORTHO05D003982 5.4e-17 91.3 112 51.8
CSS0028065 Camellia sinensis var. sinensis HOM05D002511 ORTHO05D003982 5.4e-17 91.3 112 53.6
Eucgr.H00058 Eucalyptus grandis HOM05D002511 ORTHO05D003982 5.4e-17 91.3 113 52.2
Dinv38243 Davidia involucrata HOM05D002511 ORTHO05D003982 7.1e-17 90.9 113 54.9
Thhalv10016177m.g Eutrema salsugineum HOM05D002511 ORTHO05D003982 7.1e-17 90.9 112 52.7
Lj3A421G12 Lonicera japonica HOM05D002511 ORTHO05D003982 7.1e-17 90.9 117 53.8
Nitab4.5_0004214g0040 Nicotiana tabacum HOM05D002511 ORTHO05D003982 7.1e-17 90.9 111 55.0
Peaxi162Scf00047g00633 Petunia axillaris HOM05D002511 ORTHO05D003982 7.1e-17 90.9 109 55.0
Prupe.1G006500 Prunus persica HOM05D002511 ORTHO05D003982 7.1e-17 90.9 113 54.0
Sp4g15070 Schrenkiella parvula HOM05D002511 ORTHO05D003982 7.1e-17 90.9 112 52.7
Sed0001273 Sechium edule HOM05D002511 ORTHO05D003982 7.1e-17 90.9 113 52.2
Thhalv10006675m.g Eutrema salsugineum HOM05D002511 ORTHO05D003982 9.3e-17 90.5 112 50.9
Lalb_Chr05g0222041 Lupinus albus HOM05D002511 ORTHO05D003982 9.3e-17 90.5 112 52.7
BcaC02g07888 Brassica carinata HOM05D002511 ORTHO05D003982 1.2e-16 90.1 112 51.8
A04p25270 Brassica napus HOM05D002511 ORTHO05D003982 1.2e-16 90.1 112 51.8
BolC4t27706H Brassica oleracea HOM05D002511 ORTHO05D003982 1.2e-16 90.1 112 51.8
BraA04t18030Z Brassica rapa HOM05D002511 ORTHO05D003982 1.2e-16 90.1 112 51.8
CAN.G500.8 Capsicum annuum HOM05D002511 ORTHO05D003982 1.2e-16 90.1 112 51.8
Ca_30368_v3 Cicer arietinum L. HOM05D002511 ORTHO05D003982 1.2e-16 90.1 113 51.3
Lalb_Chr16g0387381 Lupinus albus HOM05D002511 ORTHO05D003982 1.2e-16 90.1 113 52.2
MD15G1407100 Malus domestica HOM05D002511 ORTHO05D003982 1.2e-16 90.1 112 51.8
VMungo0251G1627 Vigna mungo HOM05D002511 ORTHO05D003982 1.2e-16 90.1 112 51.8
BcaB06g28630 Brassica carinata HOM05D002511 ORTHO05D003982 1.6e-16 89.7 112 51.8
C03p21340 Brassica napus HOM05D002511 ORTHO05D003982 1.6e-16 89.7 112 51.8
COL.COLO4_10274 Corchorus olitorius HOM05D002511 ORTHO05D003982 1.6e-16 89.7 112 51.8
Duzib268G1285 Durio zibethinus HOM05D002511 ORTHO05D003982 1.6e-16 89.7 113 52.2
Glyma.05G241500 Glycine max HOM05D002511 ORTHO05D003982 1.6e-16 89.7 112 51.8
MSTRG.4212 Avicennia marina HOM05D002511 ORTHO05D003982 2.1e-16 89.4 113 54.9
C04p62330 Brassica napus HOM05D002511 ORTHO05D003982 2.1e-16 89.4 112 51.8
BraA05t20226Z Brassica rapa HOM05D002511 ORTHO05D003982 2.1e-16 89.4 112 52.7
Nn1g07855 Nelumbo nucifera HOM05D002511 ORTHO05D003982 2.1e-16 89.4 111 55.0
Sabra17G0046200 Salix brachista HOM05D002511 ORTHO05D003982 2.1e-16 89.4 113 52.2
AL4G28170 Arabidopsis lyrata HOM05D002511 ORTHO05D003982 2.7e-16 89.0 112 52.7
AT2G32730 Arabidopsis thaliana HOM05D002511 ORTHO05D003982 2.7e-16 89.0 112 52.7
CSS0036933 Camellia sinensis var. sinensis HOM05D002511 ORTHO05D003982 2.7e-16 89.0 113 54.0
Carub.0004s1409 Capsella rubella HOM05D002511 ORTHO05D003982 2.7e-16 89.0 112 51.8
Glyma.08G048800 Glycine max HOM05D002511 ORTHO05D003982 2.7e-16 89.0 112 51.8
Gohir.A02G023301 Gossypium hirsutum HOM05D002511 ORTHO05D003982 2.7e-16 89.0 113 51.3
TAR636G1855 Trochodendron aralioides HOM05D002511 ORTHO05D003982 2.7e-16 89.0 116 51.7
Gorai.006G222100 Gossypium raimondii HOM05D002511 ORTHO05D003982 3.5e-16 88.6 113 51.3
Manes.15G052800 Manihot esculenta HOM05D002511 ORTHO05D003982 3.5e-16 88.6 113 50.4
Potri.017G054400 Populus trichocarpa HOM05D002511 ORTHO05D003982 3.5e-16 88.6 113 52.2
A03p18290 Brassica napus HOM05D002511 ORTHO05D003982 4.6e-16 88.2 112 51.8
BolC3t14517H Brassica oleracea HOM05D002511 ORTHO05D003982 4.6e-16 88.2 112 51.8
BraA03t11089Z Brassica rapa HOM05D002511 ORTHO05D003982 4.6e-16 88.2 112 51.8
Ca_17242_v3 Cicer arietinum L. HOM05D002511 ORTHO05D003982 4.6e-16 88.2 111 51.4
Gohir.D02G030800 Gossypium hirsutum HOM05D002511 ORTHO05D003982 4.6e-16 88.2 113 51.3
Gorai.005G034100 Gossypium raimondii HOM05D002511 ORTHO05D003982 4.6e-16 88.2 113 51.3
HanXRQChr07g0185721 Helianthus annuus HOM05D002511 ORTHO05D003982 4.6e-16 88.2 112 53.6
Medtr8g106120 Medicago truncatula HOM05D002511 ORTHO05D003982 4.6e-16 88.2 112 50.0
Potri.001G314300 Populus trichocarpa HOM05D002511 ORTHO05D003982 4.6e-16 88.2 113 52.2
PGSC0003DMG400029633 Solanum tuberosum HOM05D002511 ORTHO05D003982 4.6e-16 88.2 113 53.1
vmacro15524 Vaccinium macrocarpon HOM05D002511 ORTHO05D003982 4.6e-16 88.2 111 55.9
Hma1.2p1_1382F.1_g279360 Hydrangea macrophylla HOM05D002511 ORTHO05D003982 6.0e-16 87.8 113 54.9
Hma1.2p1_2176F.1_g316110 Hydrangea macrophylla HOM05D002511 ORTHO05D003982 6.0e-16 87.8 113 54.9
Phvul.002G324700 Phaseolus vulgaris HOM05D002511 ORTHO05D003982 6.0e-16 87.8 112 50.9
BcaB02g10496 Brassica carinata HOM05D002511 ORTHO05D003982 1.0e-15 87.0 112 51.8
C04p16890 Brassica napus HOM05D002511 ORTHO05D003982 1.0e-15 87.0 112 51.8
FvH4_4g00680 Fragaria vesca HOM05D002511 ORTHO05D003982 1.0e-15 87.0 113 51.3
FAN22G1700 Fragaria x ananassa HOM05D002511 ORTHO05D003982 1.0e-15 87.0 113 51.3
RcHm_v2.0_Chr4g0386391 Rosa chinensis HOM05D002511 ORTHO05D003982 1.0e-15 87.0 113 51.3
Solyc09g091750.3 Solanum lycopersicum HOM05D002511 ORTHO05D003982 1.0e-15 87.0 113 52.2
Sopen09g034640 Solanum pennellii HOM05D002511 ORTHO05D003982 1.0e-15 87.0 113 52.2
PGSC0003DMG400015761 Solanum tuberosum HOM05D002511 ORTHO05D003982 1.0e-15 87.0 113 51.3
ATR1145G051 Amborella trichopoda HOM05D002511 ORTHO05D003982 1.3e-15 86.7 112 52.7
CARHR126620 Cardamine hirsuta HOM05D002511 ORTHO05D003982 1.3e-15 86.7 112 51.8
TPR.G12873 Trifolium pratense HOM05D002511 ORTHO05D003982 1.3e-15 86.7 113 50.4
Gohir.A09G204800 Gossypium hirsutum HOM05D002511 ORTHO05D003982 1.8e-15 86.3 113 50.4
PGR142G3676 Punica granatum HOM05D002511 ORTHO05D003982 1.8e-15 86.3 113 50.4
Migut.N00376 Erythranthe guttata HOM05D002511 ORTHO05D003982 2.3e-15 85.9 113 53.1
FAN17G0170 Fragaria x ananassa HOM05D002511 ORTHO05D003982 2.3e-15 85.9 113 50.4
Gohir.D09G198500 Gossypium hirsutum HOM05D002511 ORTHO05D003982 2.3e-15 85.9 113 50.4
Duzib151G0338 Durio zibethinus HOM05D002511 ORTHO05D003982 3.0e-15 85.5 113 50.4
Solyc05g053650.3 Solanum lycopersicum HOM05D002511 ORTHO05D003982 3.0e-15 85.5 113 50.4
Sopen05g032150 Solanum pennellii HOM05D002511 ORTHO05D003982 3.0e-15 85.5 113 50.4
Thecc.04G205200 Theobroma cacao HOM05D002511 ORTHO05D003982 3.0e-15 85.5 113 50.4
TAR362G1109 Trochodendron aralioides HOM05D002511 ORTHO05D003982 3.0e-15 85.5 112 52.7
Actinidia39965 Actinidia chinensis HOM05D002511 ORTHO05D003982 3.9e-15 85.1 113 52.2
FAN12G1391 Fragaria x ananassa HOM05D002511 ORTHO05D003982 3.9e-15 85.1 113 50.4
Lj4g0013237 Lotus japonicus HOM05D002511 ORTHO05D003982 3.9e-15 85.1 113 50.4
Nitab4.5_0003502g0020 Nicotiana tabacum HOM05D002511 ORTHO05D003982 3.9e-15 85.1 113 52.2
TPR.G10133 Trifolium pratense HOM05D002511 ORTHO05D003982 3.9e-15 85.1 115 47.0
Nn3g19965 Nelumbo nucifera HOM05D002511 ORTHO05D003982 5.1e-15 84.7 113 52.2
Oeu021171.1 Olea europaea HOM05D002511 ORTHO05D003982 5.1e-15 84.7 112 51.8
SalBow3G0794 Salvia bowleyana HOM05D002511 ORTHO05D003982 5.1e-15 84.7 113 52.2
Gohir.A03G094100 Gossypium hirsutum HOM05D002511 ORTHO05D003982 6.7e-15 84.3 112 48.2
Gohir.D05G324800 Gossypium hirsutum HOM05D002511 ORTHO05D003982 6.7e-15 84.3 113 51.3
Gorai.009G349000 Gossypium raimondii HOM05D002511 ORTHO05D003982 6.7e-15 84.3 113 51.3
Gohir.D02G123300 Gossypium hirsutum HOM05D002511 ORTHO05D003982 1.1e-14 83.6 112 48.2
Oeu001471.1 Olea europaea HOM05D002511 ORTHO05D003982 1.1e-14 83.6 113 51.3
SGA_v2.0_scaffold410G51125 Striga asiatica HOM05D002511 ORTHO05D003982 1.1e-14 83.6 113 50.4
Gohir.A05G322400 Gossypium hirsutum HOM05D002511 ORTHO05D003982 1.5e-14 83.2 113 49.6
Gorai.005G131000 Gossypium raimondii HOM05D002511 ORTHO05D003982 1.5e-14 83.2 112 48.2
Oeu006728.1 Olea europaea HOM05D002511 ORTHO05D003982 1.5e-14 83.2 113 50.4
MD04G1006300 Malus domestica HOM05D002511 ORTHO05D003982 2.5e-14 82.4 113 50.4
SEGI_25283 Sequoiadendron giganteum HOM05D002511 ORTHO05D003982 2.5e-14 82.4 113 50.4
Migut.M00547 Erythranthe guttata HOM05D002511 ORTHO05D003982 3.3e-14 82.0 113 50.4
SalBow8G2557 Salvia bowleyana HOM05D002511 ORTHO05D003982 3.3e-14 82.0 113 52.2
CAN.G765.18 Capsicum annuum HOM05D002511 ORTHO05D003982 4.3e-14 81.6 113 48.7
Dinv29588 Davidia involucrata HOM05D002511 ORTHO05D003982 4.3e-14 81.6 106 53.8
Actinidia11411 Actinidia chinensis HOM05D002511 ORTHO05D013388 5.6e-14 81.3 113 50.4
Medtr2g067250 Medicago truncatula HOM05D002511 ORTHO05D003982 7.4e-14 80.9 112 46.4
PSO170G3012 Papaver somniferum HOM05D002511 ORTHO05D003982 7.4e-14 80.9 113 53.1
PSO357G0370 Papaver somniferum HOM05D002511 ORTHO05D003982 7.4e-14 80.9 113 53.1
Sc13g0000120 Simmondsia chinensis HOM05D002511 ORTHO05D003982 7.4e-14 80.9 113 50.4
ECA233G0877 Erigeron canadensis HOM05D002511 ORTHO05D003982 9.6e-14 80.5 113 51.3
Sabra16G0198800 Salix brachista HOM05D002511 ORTHO05D003982 9.6e-14 80.5 113 49.6
Aqoxy5G00076 Aquilegia oxysepala HOM05D002511 ORTHO05D003982 1.3e-13 80.1 112 50.0
CARHR004200 Cardamine hirsuta HOM05D002511 ORTHO05D003982 2.1e-13 79.3 110 45.5
Hund22577 Selenicereus undatus HOM05D002511 ORTHO05D003982 3.7e-13 78.6 113 51.3
AUR62033023 Chenopodium quinoa HOM05D002511 ORTHO05D003982 4.8e-13 78.2 113 50.4
HPP92_003000 Vanilla planifolia HOM05D002511 ORTHO05D003982 4.8e-13 78.2 112 50.0
BolC4t23246H Brassica oleracea HOM05D002511 ORTHO05D003982 6.2e-13 77.8 121 47.1
HanXRQChr02g0058871 Helianthus annuus HOM05D002511 ORTHO05D003982 1.1e-12 77.0 113 51.3
Lsat_1_v5_gn_6_60460 Lactuca sativa HOM05D002511 ORTHO05D003982 1.4e-12 76.6 106 52.8
Cc00_g24480 Coffea canephora HOM05D002511 ORTHO05D013388 4.0e-12 75.1 92 55.4
Zm00001eb071300 Zea mays HOM05D002511 ORTHO05D003982 4.0e-12 75.1 112 46.4
Aa31LG1G20090 Aethionema arabicum HOM05D002511 ORTHO05D000709 5.3e-12 74.7 112 42.9
EL10Ac3g07489 Beta vulgaris HOM05D002511 ORTHO05D003982 1.2e-11 73.6 113 49.6
AUR62020813 Chenopodium quinoa HOM05D002511 ORTHO05D003982 1.5e-11 73.2 111 49.5
Aqoxy5G01459 Aquilegia oxysepala HOM05D002511 ORTHO05D003982 2.6e-11 72.4 111 48.6
Zm00001eb430580 Zea mays HOM05D002511 ORTHO05D003982 2.6e-11 72.4 112 45.5
PSO339G3711 Papaver somniferum HOM05D002511 ORTHO05D003982 1.3e-10 70.1 113 45.1
Prupe.1G554900 Prunus persica HOM05D002511 ORTHO05D003982 1.3e-10 70.1 142 40.1
Zm00001eb414040 Zea mays HOM05D002511 ORTHO05D003982 1.3e-10 70.1 111 45.9
Os08g0224700 Oryza sativa ssp. japonica HOM05D002511 ORTHO05D003982 1.7e-10 69.7 113 45.1
AUR62032921 Chenopodium quinoa HOM05D002511 ORTHO05D003982 2.2e-10 69.3 113 48.7
unitig_747.g21696 Utricularia gibba HOM05D002511 ORTHO05D003982 2.9e-10 68.9 140 40.7
Zm00001eb170990 Zea mays HOM05D002511 ORTHO05D003982 2.9e-10 68.9 111 45.0
CDE06G2028 Ceratophyllum demersum HOM05D002511 ORTHO05D003982 4.9e-10 68.2 111 43.2
SGA_v2.0_scaffold57G20126 Striga asiatica HOM05D002511 ORTHO05D003982 8.4e-10 67.4 140 40.7
SMO351G0298 Selaginella moellendorffii HOM05D002511 ORTHO05D003982 1.9e-09 66.2 111 44.1
vmacro01481 Vaccinium macrocarpon HOM05D000346 ORTHO05D022952 2.4e-09 65.9 51 70.6
vmacro04095 Vaccinium macrocarpon HOM05D000346 ORTHO05D022952 2.4e-09 65.9 51 70.6
vmacro22427 Vaccinium macrocarpon HOM05D000346 ORTHO05D022952 2.4e-09 65.9 51 70.6
CBR_g72635 Chara braunii HOM05D002511 ORTHO05D003982 5.5e-09 64.7 112 43.8
Migut.G00673 Erythranthe guttata HOM05D002511 ORTHO05D003982 5.5e-09 64.7 112 45.5
A05p12870 Brassica napus HOM05D002511 ORTHO05D003982 7.1e-09 64.3 58 58.6
AUR62040773 Chenopodium quinoa HOM05D002511 ORTHO05D003982 7.1e-09 64.3 59 61.0
MD08G1218700 Malus domestica HOM05D002511 ORTHO05D013388 7.1e-09 64.3 110 44.5
Pp3c8_15860 Physcomitrium patens HOM05D002511 ORTHO05D003982 7.1e-09 64.3 113 43.4
Pp3c20_16700 Physcomitrium patens HOM05D002511 ORTHO05D003982 9.3e-09 63.9 113 40.7
Mapoly0034s0048 Marchantia polymorpha HOM05D002511 ORTHO05D003982 1.2e-08 63.5 112 40.2
Ah.10g036160 Amaranthus hybridus HOM05D002511 ORTHO05D003982 1.6e-08 63.2 113 41.6
CDE02G1830 Ceratophyllum demersum HOM05D002511 ORTHO05D003982 1.6e-08 63.2 111 39.6
AL2G18495 Arabidopsis lyrata HOM05D002511 ORTHO05D003982 2.7e-08 62.4 113 40.7
Pp3c24_17290 Physcomitrium patens HOM05D002511 ORTHO05D003982 4.6e-08 61.6 113 41.6
Medtr3g009940 Medicago truncatula HOM05D002511 ORTHO05D013388 4.3e-06 55.1 58 50.0
DCAR_024479 Daucus carota HOM05D002511 ORTHO05D003982 5.6e-06 54.7 50 58.0


User provided reference genes

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