Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g08950 Coffea canephora HOM05D008132 ORTHO05D005763 5.0e-40 167.9 128 100.0
Oeu022674.1 Olea europaea HOM05D008132 ORTHO05D005763 1.6e-17 93.2 131 67.9
Oeu022673.1 Olea europaea HOM05D008132 ORTHO05D005763 5.5e-15 84.7 159 58.5
Migut.G00657 Erythranthe guttata HOM05D008132 ORTHO05D005763 2.3e-13 79.3 134 46.3
Migut.G01101 Erythranthe guttata HOM05D008132 ORTHO05D005763 2.3e-13 79.3 134 46.3
Migut.O00629 Erythranthe guttata HOM05D008132 ORTHO05D005763 2.3e-13 79.3 134 46.3
Migut.G00825 Erythranthe guttata HOM05D008132 ORTHO05D005763 3.0e-13 79.0 164 54.9
PGR042G2058 Punica granatum HOM05D008132 ORTHO05D005763 3.0e-13 79.0 129 55.8
Actinidia09763 Actinidia chinensis HOM05D008132 ORTHO05D005763 2.0e-12 76.3 151 59.6
Migut.G01155 Erythranthe guttata HOM05D008132 ORTHO05D005763 4.4e-12 75.1 139 60.4
Migut.G00827 Erythranthe guttata HOM05D008132 ORTHO05D005763 7.5e-12 74.3 142 59.2
PGR042G0640 Punica granatum HOM05D008132 ORTHO05D005763 1.7e-11 73.2 129 48.1
THA.LOC104826606 Tarenaya hassleriana HOM05D008158 ORTHO05D010323 1.7e-11 73.2 137 58.4
Migut.G01096 Erythranthe guttata HOM05D008132 ORTHO05D005763 2.8e-11 72.4 144 55.6
Cc00_g16260 Coffea canephora HOM05D008132 ORTHO05D005763 6.3e-11 71.2 130 43.1
arahy.Tifrunner.gnm1.ann1.5E44W3 Arachis hypogaea HOM05D008132 ORTHO05D005763 1.4e-10 70.1 132 50.8
THA.LOC104826607 Tarenaya hassleriana HOM05D008158 ORTHO05D010323 2.4e-10 69.3 129 62.8
QL08p029862 Quercus lobata HOM05D008132 ORTHO05D005763 3.1e-10 68.9 135 60.0
Medtr5g084330 Medicago truncatula HOM05D009657 ORTHO05D005763 4.1e-10 68.6 132 54.5
GSVIVG01030407001 Vitis vinifera HOM05D008132 ORTHO05D005763 5.4e-10 68.2 169 55.0
Cpa.g.sc132.70 Carica papaya HOM05D008132 ORTHO05D005763 7.0e-10 67.8 138 52.2
Cpa.g.sc132.73 Carica papaya HOM05D008132 ORTHO05D005763 7.0e-10 67.8 138 52.2
Sopen09g035750 Solanum pennellii HOM05D012878 ORTHO05D005763 1.2e-09 67.0 136 61.8
AT2G05540 Arabidopsis thaliana HOM05D008158 ORTHO05D010323 2.7e-09 65.9 136 64.0
MSTRG.9644 Avicennia marina HOM05D008132 ORTHO05D005763 3.5e-09 65.5 134 60.4
MSTRG.9649 Avicennia marina HOM05D008132 ORTHO05D005763 4.5e-09 65.1 124 55.6
Peaxi162Scf00286g00087 Petunia axillaris HOM05D012878 ORTHO05D005763 7.7e-09 64.3 138 63.0
COL.COLO4_04943 Corchorus olitorius HOM05D008132 ORTHO05D005763 1.0e-08 63.9 134 57.5
EL10Ac9g22778 Beta vulgaris HOM05D008132 ORTHO05D005763 1.3e-08 63.5 136 57.4
BcaB08g34503 Brassica carinata HOM05D008158 ORTHO05D010323 1.3e-08 63.5 133 63.9
CAN.G2020.3 Capsicum annuum HOM05D012878 ORTHO05D005763 1.3e-08 63.5 130 51.5
CARHR103240 Cardamine hirsuta HOM05D008158 ORTHO05D010323 1.7e-08 63.2 126 57.1
MSTRG.4386 Avicennia marina HOM05D008132 ORTHO05D005763 2.2e-08 62.8 131 35.9
Migut.G01100 Erythranthe guttata HOM05D008132 ORTHO05D005763 2.9e-08 62.4 131 51.9
C03p55470 Brassica napus HOM05D008158 ORTHO05D010323 3.8e-08 62.0 133 57.1
LjContig00357g0014262 Lotus japonicus HOM05D009657 ORTHO05D005763 3.8e-08 62.0 140 62.1
Nitab4.5_0000037g0280 Nicotiana tabacum HOM05D008132 ORTHO05D005763 3.8e-08 62.0 132 44.7
BcaC01g03159 Brassica carinata HOM05D008158 ORTHO05D010323 5.0e-08 61.6 133 63.9
Gohir.D07G195400 Gossypium hirsutum HOM05D008132 ORTHO05D005763 5.0e-08 61.6 136 62.5
Nn1g09274 Nelumbo nucifera HOM05D008132 ORTHO05D005763 5.0e-08 61.6 136 57.4
MSTRG.4268 Avicennia marina HOM05D008132 ORTHO05D005763 6.5e-08 61.2 139 61.9
A03p44640 Brassica napus HOM05D008158 ORTHO05D010323 6.5e-08 61.2 130 63.8
Cc00_g35190 Coffea canephora HOM05D008132 ORTHO05D005763 6.5e-08 61.2 89 55.1
Migut.G01099 Erythranthe guttata HOM05D008132 ORTHO05D005763 8.5e-08 60.8 34 70.6
Nitab4.5_0000037g0290 Nicotiana tabacum HOM05D008132 ORTHO05D005763 8.5e-08 60.8 133 37.6
Nn1g09275 Nelumbo nucifera HOM05D008132 ORTHO05D005763 1.1e-07 60.5 134 59.0
Dinv05855 Davidia involucrata HOM05D016168 ORTHO05D005763 1.9e-07 59.7 134 61.2
Glyma.14G051900 Glycine max HOM05D016758 ORTHO05D005763 1.9e-07 59.7 136 59.6
Thecc.01G236900 Theobroma cacao HOM05D008132 ORTHO05D005763 1.9e-07 59.7 139 59.0
Phvul.008G216600 Phaseolus vulgaris HOM05D016758 ORTHO05D005763 2.5e-07 59.3 141 60.3
Oeu050730.1 Olea europaea HOM05D064041 ORTHO05D005763 4.2e-07 58.5 54 63.0
Thecc.01G186700 Theobroma cacao HOM05D008132 ORTHO05D005763 4.2e-07 58.5 137 52.6
Eucgr.A01080 Eucalyptus grandis HOM05D008132 ORTHO05D005763 5.5e-07 58.2 146 51.4
Peaxi162Scf00286g00820 Petunia axillaris HOM05D008132 ORTHO05D005763 5.5e-07 58.2 132 43.2
Gohir.A07G085700 Gossypium hirsutum HOM05D008132 ORTHO05D005763 7.2e-07 57.8 126 58.7
Gorai.006G083000 Gossypium raimondii HOM05D008132 ORTHO05D005763 7.2e-07 57.8 136 57.4
PGR042G2773 Punica granatum HOM05D008132 ORTHO05D005763 9.4e-07 57.4 147 56.5
Ciclev10017145m.g Citrus clementina HOM05D016168 ORTHO05D005763 1.2e-06 57.0 136 59.6
COL.COLO4_04941 Corchorus olitorius HOM05D008132 ORTHO05D005763 2.1e-06 56.2 149 59.7
Lalb_Chr04g0258791 Lupinus albus HOM05D021502 ORTHO05D005763 2.7e-06 55.8 137 35.8
Thhalv10002728m.g Eutrema salsugineum HOM05D008158 ORTHO05D010323 3.6e-06 55.5 128 61.7
CiPaw.03G275800 Carya illinoinensis HOM05D052008 ORTHO05D005763 4.7e-06 55.1 137 36.5
COL.COLO4_04214 Corchorus olitorius HOM05D008132 ORTHO05D005763 6.1e-06 54.7 142 63.4
VMungo0647G2202 Vigna mungo HOM05D016758 ORTHO05D005763 6.1e-06 54.7 142 60.6
ClCG02G002460 Citrullus lanatus HOM05D016168 ORTHO05D005763 8.0e-06 54.3 136 52.9
Hma1.2p1_0133F.1_g060930 Hydrangea macrophylla HOM05D034078 ORTHO05D005763 8.0e-06 54.3 58 62.1


User provided reference genes

Program Settings