Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g08400 Coffea canephora HOM05D001981 ORTHO05D000470 3.7e-28 127.5 63 100.0
COL.COLO4_20218 Corchorus olitorius HOM05D001981 ORTHO05D000470 1.3e-17 92.4 62 74.2
Nitab4.5_0006920g0050 Nicotiana tabacum HOM05D001981 ORTHO05D000470 1.7e-17 92.0 62 74.2
Nitab4.5_0006920g0040 Nicotiana tabacum HOM05D001981 ORTHO05D000470 2.9e-17 91.3 61 77.0
CSS0033730 Camellia sinensis var. sinensis HOM05D001981 ORTHO05D000470 6.5e-17 90.1 63 74.6
Nn1g08216 Nelumbo nucifera HOM05D001981 ORTHO05D000470 1.1e-16 89.4 62 71.0
Thecc.04G196100 Theobroma cacao HOM05D001981 ORTHO05D000470 1.1e-16 89.4 62 71.0
Manes.03G144800 Manihot esculenta HOM05D001981 ORTHO05D000470 1.4e-16 89.0 63 71.4
Oeu043442.1 Olea europaea HOM05D001981 ORTHO05D000470 1.9e-16 88.6 62 69.4
Actinidia33178 Actinidia chinensis HOM05D001981 ORTHO05D000470 2.5e-16 88.2 62 72.6
Duzib151G0653 Durio zibethinus HOM05D001981 ORTHO05D000470 2.5e-16 88.2 62 69.4
Gohir.D02G022900 Gossypium hirsutum HOM05D001981 ORTHO05D000470 4.2e-16 87.4 63 68.3
Gorai.005G028300 Gossypium raimondii HOM05D001981 ORTHO05D000470 4.2e-16 87.4 63 68.3
Atru.chr4.1595 Acer truncatum HOM05D001981 ORTHO05D000470 5.5e-16 87.0 62 74.2
vmacro00442 Vaccinium macrocarpon HOM05D001981 ORTHO05D000470 5.5e-16 87.0 63 69.8
TAR365G0430 Trochodendron aralioides HOM05D001981 ORTHO05D000470 7.2e-16 86.7 62 69.4
Actinidia35845 Actinidia chinensis HOM05D001981 ORTHO05D000470 9.3e-16 86.3 62 71.0
CiPaw.01G117600 Carya illinoinensis HOM05D001981 ORTHO05D000470 1.6e-15 85.5 62 71.0
Haze_11646 Corylus avellana HOM05D001981 ORTHO05D000470 1.6e-15 85.5 63 69.8
Gohir.A02G019600 Gossypium hirsutum HOM05D001981 ORTHO05D000470 2.1e-15 85.1 63 66.7
Oeu055764.1 Olea europaea HOM05D001981 ORTHO05D000470 2.1e-15 85.1 62 71.0
Sabra17G0052000 Salix brachista HOM05D001981 ORTHO05D000470 2.1e-15 85.1 65 73.8
Dinv27206 Davidia involucrata HOM05D001981 ORTHO05D000470 2.7e-15 84.7 62 72.6
Potri.017G058400 Populus trichocarpa HOM05D001981 ORTHO05D000470 3.6e-15 84.3 64 70.3
CAN.G1155.23 Capsicum annuum HOM05D001981 ORTHO05D000470 4.6e-15 84.0 62 69.4
FvH4_4g13370 Fragaria vesca HOM05D001981 ORTHO05D000470 7.9e-15 83.2 63 71.4
FAN12G2206 Fragaria x ananassa HOM05D001981 ORTHO05D000470 7.9e-15 83.2 63 71.4
FAN22G2298 Fragaria x ananassa HOM05D001981 ORTHO05D000470 7.9e-15 83.2 63 71.4
RcHm_v2.0_Chr4g0413741 Rosa chinensis HOM05D001981 ORTHO05D000470 7.9e-15 83.2 63 71.4
AUR62020857 Chenopodium quinoa HOM05D001981 ORTHO05D000470 1.0e-14 82.8 62 62.9
Manes.15G056300 Manihot esculenta HOM05D001981 ORTHO05D000470 1.0e-14 82.8 63 66.7
Sc13g0000360 Simmondsia chinensis HOM05D001981 ORTHO05D000470 1.8e-14 82.0 63 61.9
AUR62018562 Chenopodium quinoa HOM05D001981 ORTHO05D000470 2.3e-14 81.6 62 61.3
FAN17G0039 Fragaria x ananassa HOM05D001981 ORTHO05D000470 2.3e-14 81.6 63 68.3
Nitab4.5_0000697g0070 Nicotiana tabacum HOM05D001981 ORTHO05D000470 3.0e-14 81.3 64 67.2
Potri.001G319100 Populus trichocarpa HOM05D001981 ORTHO05D000470 3.9e-14 80.9 66 68.2
DCAR_026642 Daucus carota HOM05D001981 ORTHO05D000470 5.1e-14 80.5 61 63.9
FAN07G2808 Fragaria x ananassa HOM05D001981 ORTHO05D000470 6.7e-14 80.1 63 68.3
Prupe.1G163300 Prunus persica HOM05D001981 ORTHO05D000470 6.7e-14 80.1 63 68.3
CAN.G765.35 Capsicum annuum HOM05D001981 ORTHO05D000470 8.7e-14 79.7 62 66.1
TWI73G0353 Tripterygium wilfordii HOM05D001981 ORTHO05D000470 8.7e-14 79.7 62 64.5
MSTRG.4241 Avicennia marina HOM05D001981 ORTHO05D000470 1.1e-13 79.3 62 66.1
Solyc09g092260.4 Solanum lycopersicum HOM05D001981 ORTHO05D000470 1.1e-13 79.3 62 64.5
QL06p026193 Quercus lobata HOM05D001981 ORTHO05D000470 1.5e-13 79.0 62 66.1
CANSAT78G0914 Cannabis sativa HOM05D001981 ORTHO05D000470 2.5e-13 78.2 62 66.1
CANSAT78G1622 Cannabis sativa HOM05D001981 ORTHO05D000470 2.5e-13 78.2 62 66.1
MBI11_g07409_MAGBIO Magnolia biondii HOM05D001981 ORTHO05D000470 2.5e-13 78.2 62 61.3
Cpa.g.sc83.43 Carica papaya HOM05D001981 ORTHO05D000470 3.3e-13 77.8 63 65.1
Eucgr.H02689 Eucalyptus grandis HOM05D001981 ORTHO05D000470 3.3e-13 77.8 61 63.9
Sopen09g035190 Solanum pennellii HOM05D001981 ORTHO05D000470 3.3e-13 77.8 62 62.9
Sed0001043 Sechium edule HOM05D001981 ORTHO05D000470 4.3e-13 77.4 62 67.7
PGSC0003DMG400024357 Solanum tuberosum HOM05D001981 ORTHO05D000470 4.3e-13 77.4 62 62.9
EL10Ac3g07460 Beta vulgaris HOM05D001981 ORTHO05D000470 5.7e-13 77.0 62 61.3
CiPaw.02G064900 Carya illinoinensis HOM05D001981 ORTHO05D000470 5.7e-13 77.0 62 62.9
Duzib268G0016 Durio zibethinus HOM05D001981 ORTHO05D000470 5.7e-13 77.0 62 62.9
TPR.G11800 Trifolium pratense HOM05D001981 ORTHO05D000470 5.7e-13 77.0 64 60.9
TAR636G3299 Trochodendron aralioides HOM05D001981 ORTHO05D000470 5.7e-13 77.0 62 59.7
Sabra16G0202000 Salix brachista HOM05D001981 ORTHO05D000470 7.4e-13 76.6 64 67.2
Glyma.08G109700 Glycine max HOM05D001981 ORTHO05D000470 9.7e-13 76.3 62 59.7
MD04G1016600 Malus domestica HOM05D001981 ORTHO05D000470 9.7e-13 76.3 66 62.1
Oeu049045.1 Olea europaea HOM05D001981 ORTHO05D000470 9.7e-13 76.3 62 62.9
Glyma.05G152800 Glycine max HOM05D001981 ORTHO05D000470 1.6e-12 75.5 62 59.7
Lj4g0015471 Lotus japonicus HOM05D001981 ORTHO05D000470 2.2e-12 75.1 63 58.7
Lalb_Chr12g0205591 Lupinus albus HOM05D001981 ORTHO05D000470 2.2e-12 75.1 62 61.3
Phvul.003G050500 Phaseolus vulgaris HOM05D001981 ORTHO05D000470 2.8e-12 74.7 63 60.3
PGSC0003DMG400015755 Solanum tuberosum HOM05D001981 ORTHO05D000470 2.8e-12 74.7 62 62.9
Oeu056421.1 Olea europaea HOM05D001981 ORTHO05D000470 3.7e-12 74.3 62 62.9
VMungo0251G1994 Vigna mungo HOM05D001981 ORTHO05D000470 3.7e-12 74.3 62 59.7
ATR0749G009 Amborella trichopoda HOM05D001981 ORTHO05D000470 4.8e-12 73.9 65 60.0
Solyc05g053760.4 Solanum lycopersicum HOM05D001981 ORTHO05D000470 6.3e-12 73.6 62 61.3
Sopen05g032230 Solanum pennellii HOM05D001981 ORTHO05D000470 6.3e-12 73.6 62 61.3
arahy.Tifrunner.gnm1.ann1.DM5ZEB Arachis hypogaea HOM05D001981 ORTHO05D000470 2.4e-11 71.6 64 56.2
Dinv19153 Davidia involucrata HOM05D001981 ORTHO05D000470 3.1e-11 71.2 62 59.7
THA.LOC104822222 Tarenaya hassleriana HOM05D001981 ORTHO05D000470 3.1e-11 71.2 63 58.7
MELO3C020425.2 Cucumis melo HOM05D001981 ORTHO05D000470 4.1e-11 70.9 62 58.1
Nitab4.5_0002260g0120 Nicotiana tabacum HOM05D001981 ORTHO05D000470 5.3e-11 70.5 66 59.1
TAR362G0698 Trochodendron aralioides HOM05D001981 ORTHO05D000470 5.3e-11 70.5 62 59.7
Lalb_Chr07g0186811 Lupinus albus HOM05D001981 ORTHO05D000470 6.9e-11 70.1 64 56.2
Dinv28844 Davidia involucrata HOM05D001981 ORTHO05D000470 9.1e-11 69.7 62 58.1
Lj2A1123T27 Lonicera japonica HOM05D001981 ORTHO05D000470 1.5e-10 68.9 62 56.5
HPP92_024555 Vanilla planifolia HOM05D001981 ORTHO05D000470 2.0e-10 68.6 62 54.8
GSVIVG01021014001 Vitis vinifera HOM05D001981 ORTHO05D000470 2.6e-10 68.2 66 56.1
CSS0022287 Camellia sinensis var. sinensis HOM05D001981 ORTHO05D000470 3.4e-10 67.8 48 70.8
Psat7g074760 Pisum sativum HOM05D001981 ORTHO05D000470 3.4e-10 67.8 63 57.1
HanXRQChr14g0435821 Helianthus annuus HOM05D001981 ORTHO05D000470 4.5e-10 67.4 63 52.4
Carub.0007s2861 Capsella rubella HOM05D001981 ORTHO05D000470 7.7e-10 66.6 62 51.6
SGA_v2.0_scaffold19G08776 Striga asiatica HOM05D001981 ORTHO05D000470 7.7e-10 66.6 61 54.1
A04p08340 Brassica napus HOM05D001981 ORTHO05D000470 1.3e-09 65.9 60 51.7
CsaV3_3G010760 Cucumis sativus L. HOM05D001981 ORTHO05D000470 1.3e-09 65.9 61 57.4
A08p06610 Brassica napus HOM05D001981 ORTHO05D000470 1.7e-09 65.5 61 50.8
BraA08t32679Z Brassica rapa HOM05D001981 ORTHO05D000470 1.7e-09 65.5 61 50.8
ClCG05G003140 Citrullus lanatus HOM05D001981 ORTHO05D000470 1.7e-09 65.5 61 59.0
Medtr8g081620 Medicago truncatula HOM05D001981 ORTHO05D000470 1.7e-09 65.5 64 53.1
PSO063G2397 Papaver somniferum HOM05D001981 ORTHO05D000470 1.7e-09 65.5 65 49.2
PSO017G5660 Papaver somniferum HOM05D001981 ORTHO05D000470 2.2e-09 65.1 65 49.2
AL7G42690 Arabidopsis lyrata HOM05D001981 ORTHO05D000470 2.9e-09 64.7 62 50.0
BcaC02g09383 Brassica carinata HOM05D001981 ORTHO05D000470 2.9e-09 64.7 60 50.0
C04p42030 Brassica napus HOM05D001981 ORTHO05D000470 2.9e-09 64.7 60 50.0
Aa31LG9G3710 Aethionema arabicum HOM05D001981 ORTHO05D000470 3.8e-09 64.3 62 48.4
MELO3C006295.2 Cucumis melo HOM05D001981 ORTHO05D000470 5.0e-09 63.9 61 57.4
Atru.chr6.1441 Acer truncatum HOM05D001981 ORTHO05D000470 6.5e-09 63.5 61 50.8
BcaB04g17644 Brassica carinata HOM05D001981 ORTHO05D000470 6.5e-09 63.5 60 51.7
CDE05G1671 Ceratophyllum demersum HOM05D001981 ORTHO05D000470 1.1e-08 62.8 52 57.7
BcaC07g37323 Brassica carinata HOM05D001981 ORTHO05D000470 1.9e-08 62.0 61 49.2
C08p07610 Brassica napus HOM05D001981 ORTHO05D000470 1.9e-08 62.0 61 49.2
BolC8t47608H Brassica oleracea HOM05D001981 ORTHO05D000470 1.9e-08 62.0 63 52.4
TAR391G0002 Trochodendron aralioides HOM05D001981 ORTHO05D000470 1.9e-08 62.0 41 70.7
Ca_17979_v3 Cicer arietinum L. HOM05D001981 ORTHO05D000470 3.2e-08 61.2 62 54.8
ECA238G3760 Erigeron canadensis HOM05D001981 ORTHO05D000470 3.2e-08 61.2 62 51.6
Sp7g11630 Schrenkiella parvula HOM05D001981 ORTHO05D000470 3.2e-08 61.2 62 53.2
BolC4t25788H Brassica oleracea HOM05D001981 ORTHO05D000470 4.2e-08 60.8 61 49.2
BraA04t16521Z Brassica rapa HOM05D001981 ORTHO05D000470 4.2e-08 60.8 61 50.8
Lsat_1_v5_gn_2_45860 Lactuca sativa HOM05D001981 ORTHO05D000470 4.2e-08 60.8 63 49.2
Aqoxy2G03943 Aquilegia oxysepala HOM05D001981 ORTHO05D000470 5.5e-08 60.5 62 51.6
CARHR219740 Cardamine hirsuta HOM05D001981 ORTHO05D000470 5.5e-08 60.5 62 54.8
GSVIVG01006408001 Vitis vinifera HOM05D001981 ORTHO05D000470 7.2e-08 60.1 62 46.8
Manes.13G050600 Manihot esculenta HOM05D001981 ORTHO05D000470 9.4e-08 59.7 57 52.6
MSTRG.20973 Avicennia marina HOM05D001981 ORTHO05D000470 1.2e-07 59.3 65 49.2
DCAR_004742 Daucus carota HOM05D001981 ORTHO05D000470 1.2e-07 59.3 62 43.5
Manes.13G050700 Manihot esculenta HOM05D001981 ORTHO05D000470 1.2e-07 59.3 57 52.6
PGR083G2750 Punica granatum HOM05D001981 ORTHO05D000470 2.7e-07 58.2 62 51.6
Thhalv10026283m.g Eutrema salsugineum HOM05D001981 ORTHO05D000470 3.6e-07 57.8 59 50.8
DCAR_012675 Daucus carota HOM05D001981 ORTHO05D000470 4.6e-07 57.4 60 48.3
Lj2A1122T46 Lonicera japonica HOM05D001981 ORTHO05D000470 4.6e-07 57.4 63 50.8
Lj2C1122T16 Lonicera japonica HOM05D001981 ORTHO05D000470 4.6e-07 57.4 63 52.4
Oeu051520.1 Olea europaea HOM05D001981 ORTHO05D000470 4.6e-07 57.4 61 50.8
Ciclev10022177m.g Citrus clementina HOM05D001981 ORTHO05D000470 7.9e-07 56.6 63 47.6
COL.COLO4_28328 Corchorus olitorius HOM05D001981 ORTHO05D000470 7.9e-07 56.6 64 50.0
DCAR_000513 Daucus carota HOM05D001981 ORTHO05D000470 7.9e-07 56.6 72 44.4
DCAR_000514 Daucus carota HOM05D001981 ORTHO05D000470 7.9e-07 56.6 72 44.4
Oeu063060.1 Olea europaea HOM05D001981 ORTHO05D000470 7.9e-07 56.6 62 51.6
Sed0014992 Sechium edule HOM05D001981 ORTHO05D000470 7.9e-07 56.6 61 52.5
Manes.12G049000 Manihot esculenta HOM05D001981 ORTHO05D000470 1.0e-06 56.2 66 48.5
Os01g0101700 Oryza sativa ssp. japonica HOM05D001981 ORTHO05D000470 1.4e-06 55.8 62 54.8
ECA236G1704 Erigeron canadensis HOM05D001981 ORTHO05D000470 2.3e-06 55.1 59 45.8
Sed0015208 Sechium edule HOM05D001981 ORTHO05D000470 2.3e-06 55.1 66 47.0
Zm00001eb127110 Zea mays HOM05D001981 ORTHO05D000470 2.3e-06 55.1 67 49.3
MSTRG.9802 Avicennia marina HOM05D001981 ORTHO05D000470 3.0e-06 54.7 62 51.6
Hma1.2p1_0149F.1_g066450 Hydrangea macrophylla HOM05D001981 ORTHO05D000470 5.1e-06 53.9 63 47.6
CDE05G3534 Ceratophyllum demersum HOM05D003330 ORTHO05D003805 8.8e-06 53.1 55 49.1
Lsat_1_v5_gn_5_177661 Lactuca sativa HOM05D001981 ORTHO05D000470 8.8e-06 53.1 61 45.9
Manes.12G049100 Manihot esculenta HOM05D001981 ORTHO05D000470 8.8e-06 53.1 56 48.2


User provided reference genes

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