Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 1.6e-61 239.2 118 100.0
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.3e-50 203.0 118 83.1
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 2.9e-50 201.8 117 85.5
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 2.9e-50 201.8 119 84.0
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 6.4e-50 200.7 119 83.2
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.4e-49 199.5 119 80.7
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 5.4e-49 197.6 118 83.1
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 1.6e-48 196.1 119 80.7
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 2.0e-48 195.7 117 82.9
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 2.7e-48 195.3 119 81.5
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 3.5e-48 194.9 119 80.7
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 3.5e-48 194.9 119 82.4
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 6.0e-48 194.1 119 82.4
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 6.0e-48 194.1 116 80.2
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 6.0e-48 194.1 119 80.7
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 7.8e-48 193.7 119 79.8
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 1.0e-47 193.4 118 79.7
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 1.0e-47 193.4 117 81.2
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 1.0e-47 193.4 118 80.5
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 1.7e-47 192.6 119 80.7
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 1.7e-47 192.6 119 80.7
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.7e-47 192.6 119 80.7
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.7e-47 192.6 118 78.8
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 3.0e-47 191.8 119 79.8
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 3.9e-47 191.4 118 80.5
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 3.9e-47 191.4 119 78.2
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 3.9e-47 191.4 118 78.0
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 5.0e-47 191.0 118 80.5
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.0e-47 191.0 118 80.5
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 5.0e-47 191.0 120 76.7
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 5.0e-47 191.0 118 78.8
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 6.6e-47 190.7 118 81.4
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 6.6e-47 190.7 118 78.8
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 8.6e-47 190.3 118 80.5
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 8.6e-47 190.3 118 81.4
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 8.6e-47 190.3 118 81.4
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 8.6e-47 190.3 118 79.7
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 8.6e-47 190.3 121 79.3
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 8.6e-47 190.3 121 79.3
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 8.6e-47 190.3 119 79.0
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.1e-46 189.9 119 79.0
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.1e-46 189.9 119 79.0
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 1.1e-46 189.9 119 79.0
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 1.1e-46 189.9 118 78.8
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.5e-46 189.5 118 78.0
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 1.5e-46 189.5 118 76.3
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 1.5e-46 189.5 118 81.4
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 1.5e-46 189.5 118 79.7
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 1.9e-46 189.1 119 78.2
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 2.5e-46 188.7 118 79.7
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 2.5e-46 188.7 118 78.8
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 2.5e-46 188.7 117 81.2
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 2.5e-46 188.7 120 78.3
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 3.3e-46 188.3 121 77.7
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 3.3e-46 188.3 118 78.8
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 3.3e-46 188.3 119 79.0
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 3.3e-46 188.3 119 79.0
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 3.3e-46 188.3 119 79.0
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 3.3e-46 188.3 119 79.0
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 3.3e-46 188.3 119 79.0
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 4.3e-46 188.0 119 78.2
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 4.3e-46 188.0 118 79.7
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 4.3e-46 188.0 120 77.5
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 4.3e-46 188.0 120 76.7
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.6e-46 187.6 118 78.8
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 5.6e-46 187.6 129 75.2
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 5.6e-46 187.6 119 77.3
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 7.3e-46 187.2 117 80.3
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 7.3e-46 187.2 118 78.8
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 9.5e-46 186.8 118 77.1
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 9.5e-46 186.8 117 78.6
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.2e-45 186.4 117 80.3
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.6e-45 186.0 118 78.0
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.6e-45 186.0 118 78.8
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 1.6e-45 186.0 119 78.2
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 3.6e-45 184.9 118 77.1
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 4.7e-45 184.5 120 77.5
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 4.7e-45 184.5 169 60.9
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 1.1e-44 183.3 119 75.6
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 3.1e-44 181.8 115 75.7
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 6.8e-44 180.6 130 71.5
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 8.9e-44 180.3 123 72.4
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 8.9e-44 180.3 119 77.3
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 3.4e-43 178.3 119 72.3
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 4.4e-43 177.9 114 76.3
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 7.5e-43 177.2 117 74.4
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 9.8e-43 176.8 117 75.2
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 2.2e-42 175.6 116 72.4
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 2.2e-42 175.6 118 72.0
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 2.9e-42 175.3 114 77.2
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 3.7e-42 174.9 118 71.2
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 3.7e-42 174.9 118 71.2
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 3.7e-42 174.9 118 71.2
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 3.7e-42 174.9 118 71.2
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 4.9e-42 174.5 118 71.2
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 4.9e-42 174.5 118 71.2
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 4.9e-42 174.5 118 71.2
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 4.9e-42 174.5 118 76.3
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 8.3e-42 173.7 117 73.5
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 8.3e-42 173.7 117 72.6
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.1e-41 173.3 114 77.2
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 1.1e-41 173.3 118 70.3
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 1.1e-41 173.3 118 70.3
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 1.1e-41 173.3 116 74.1
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 1.4e-41 172.9 117 72.6
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 1.4e-41 172.9 117 72.6
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 1.9e-41 172.6 118 70.3
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 2.4e-41 172.2 118 70.3
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 2.4e-41 172.2 115 73.9
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 2.4e-41 172.2 119 75.6
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 3.2e-41 171.8 118 69.5
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 3.2e-41 171.8 118 69.5
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 3.2e-41 171.8 115 73.0
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 4.1e-41 171.4 118 69.5
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 5.4e-41 171.0 118 69.5
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.2e-40 169.9 119 71.4
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 2.5e-38 162.2 100 82.0
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 2.5e-38 162.2 100 82.0
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 2.1e-37 159.1 101 79.2
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 2.8e-37 158.7 98 81.6
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 4.7e-37 157.9 116 69.0
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 2.3e-36 155.6 121 69.4
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 6.8e-36 154.1 134 59.7
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.2e-35 153.3 123 66.7
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 2.0e-35 152.5 102 73.5
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 1.7e-34 149.4 103 71.8
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.9e-34 148.7 105 70.5
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 1.1e-33 146.7 115 60.9
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 1.4e-33 146.4 116 62.1
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 2.4e-33 145.6 99 73.7
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 5.4e-33 144.4 98 75.5
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 1.3e-31 139.8 114 60.5
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 1.7e-31 139.4 101 72.3
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 5.6e-30 134.4 117 54.7
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 1.8e-28 129.4 102 67.6
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 3.5e-24 115.2 72 81.9
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 1.0e-23 113.6 97 62.9
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.0e-23 113.6 59 89.8
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 2.3e-23 112.5 71 80.3
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 5.1e-23 111.3 70 80.0
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 8.7e-23 110.5 60 86.7
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 1.9e-22 109.4 117 53.8
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.3e-22 108.2 60 83.3
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 4.3e-22 108.2 60 85.0
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 5.6e-22 107.8 60 88.3
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 2.1e-21 105.9 59 84.7
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 3.6e-21 105.1 60 83.3
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 3.6e-21 105.1 63 77.8
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 7.6e-19 97.4 53 84.9
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 1.7e-18 96.3 131 42.0
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 8.4e-18 94.0 55 80.0
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.9e-17 92.8 54 81.5
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 1.9e-17 92.8 138 40.6
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 7.1e-17 90.9 88 59.1
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 2.7e-16 89.0 106 51.9
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 1.9e-14 82.8 52 75.0
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 2.5e-14 82.4 53 69.8
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 1.5e-11 73.2 72 52.8
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 4.9e-10 68.2 55 65.5
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 2.1e-08 62.8 35 85.7


User provided reference genes

Program Settings