Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 1.2e-192 676.4 364 100.0
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 8.9e-143 510.8 339 79.4
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 2.0e-139 499.6 365 75.6
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 4.6e-139 498.4 363 74.1
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 1.7e-138 496.5 376 74.2
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 2.3e-138 496.1 377 73.5
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 1.1e-137 493.8 363 73.8
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 1.9e-137 493.0 341 76.8
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 5.6e-137 491.5 351 74.1
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 3.6e-136 488.8 362 72.9
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 4.7e-136 488.4 364 73.9
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 8.0e-136 487.6 335 76.7
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 1.4e-135 486.9 377 71.4
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 4.0e-135 485.3 362 73.8
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 2.6e-134 482.6 413 65.4
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 1.3e-130 470.3 341 73.0
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 5.1e-130 468.4 337 73.3
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 7.3e-129 464.5 345 69.3
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 4.7e-128 461.8 407 63.6
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 8.1e-128 461.1 353 70.5
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 4.0e-127 458.8 341 70.7
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 5.2e-127 458.4 345 69.3
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 2.0e-126 456.4 363 68.3
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 2.0e-126 456.4 351 70.7
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 3.7e-125 452.2 342 69.6
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.1e-124 450.7 345 69.3
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 1.1e-124 450.7 348 68.1
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.9e-124 449.9 355 67.9
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 1.9e-124 449.9 355 67.9
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.2e-124 449.1 345 69.3
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 5.4e-124 448.4 345 68.1
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 5.4e-124 448.4 355 67.9
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 1.2e-123 447.2 342 68.7
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 2.1e-123 446.4 342 70.5
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 6.0e-123 444.9 352 67.6
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.8e-123 444.5 345 68.1
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 5.1e-122 441.8 364 67.0
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.3e-121 439.1 366 65.6
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 1.6e-120 436.8 338 68.6
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 1.6e-120 436.8 363 63.9
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.7e-120 435.3 345 67.8
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 6.2e-120 434.9 325 74.5
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 6.2e-120 434.9 357 66.1
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 1.8e-119 433.3 338 68.3
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 2.4e-119 433.0 357 66.4
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 4.0e-119 432.2 302 77.8
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 1.5e-118 430.3 342 67.8
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 7.6e-118 427.9 325 73.5
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 6.4e-117 424.9 471 54.6
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 8.4e-117 424.5 358 63.7
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 2.4e-116 422.9 355 65.4
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 3.2e-116 422.5 362 65.2
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 7.1e-116 421.4 280 80.4
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 1.2e-115 420.6 338 66.3
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 3.5e-115 419.1 337 64.4
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 7.8e-115 417.9 338 64.8
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 1.0e-114 417.5 340 66.5
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 3.3e-113 412.5 346 65.9
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 4.3e-113 412.1 338 64.5
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.3e-112 410.6 338 62.1
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 1.3e-112 410.6 338 64.2
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 1.1e-111 407.5 338 63.0
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 2.4e-111 406.4 295 72.5
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 3.1e-111 406.0 353 63.5
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 4.0e-111 405.6 340 63.8
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 1.5e-110 403.7 368 59.8
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.0e-110 403.3 345 63.8
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 3.4e-110 402.5 361 59.3
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 1.3e-109 400.6 335 63.9
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 1.7e-109 400.2 338 62.1
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.2e-109 399.8 466 51.3
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 7.1e-108 394.8 357 59.9
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 6.0e-107 391.7 353 58.6
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 3.0e-106 389.4 337 60.8
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 3.0e-106 389.4 313 66.8
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 3.9e-106 389.0 346 62.7
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 5.1e-106 388.7 354 59.6
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 5.1e-106 388.7 337 60.8
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 5.1e-106 388.7 354 59.6
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 5.1e-106 388.7 351 59.5
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 1.1e-105 387.5 348 59.8
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 3.3e-105 386.0 339 60.8
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 3.3e-105 386.0 339 60.8
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 1.6e-104 383.6 346 59.8
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 2.1e-104 383.3 314 64.6
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 2.8e-104 382.9 341 59.5
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 4.8e-104 382.1 353 57.8
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 6.2e-104 381.7 355 58.9
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 1.1e-103 380.9 353 58.4
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 6.9e-103 378.3 355 58.3
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 1.3e-101 374.0 397 53.7
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 4.2e-100 369.0 336 61.3
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 1.2e-99 367.5 372 55.1
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 1.6e-99 367.1 265 76.6
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 5.1e-98 362.1 370 58.1
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 6.7e-98 361.7 293 64.5
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.3e-97 359.0 319 60.8
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 7.4e-97 358.2 342 58.5
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 2.1e-96 356.7 305 63.6
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 2.1e-96 356.7 319 60.8
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 4.8e-96 355.5 555 43.6
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 8.1e-96 354.8 319 60.8
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 2.4e-95 353.2 406 53.4
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 2.4e-95 353.2 328 64.9
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 4.0e-95 352.4 316 62.7
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 2.0e-94 350.1 352 56.5
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 2.0e-94 350.1 324 59.3
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 7.6e-94 348.2 335 59.4
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 4.9e-93 345.5 271 66.4
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 4.2e-92 342.4 295 60.3
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 1.6e-91 340.5 342 57.6
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 4.6e-91 339.0 311 60.1
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 1.3e-90 337.4 302 61.3
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 1.6e-88 330.5 347 53.0
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 6.9e-87 325.1 326 58.9
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 3.8e-85 319.3 306 60.1
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.4e-84 317.4 226 71.2
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 6.7e-82 308.5 249 71.1
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.2e-75 287.7 356 48.6
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 4.6e-75 285.8 342 48.0
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 8.8e-74 281.6 350 49.1
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 5.3e-71 272.3 332 51.2
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 9.4e-68 261.5 248 57.7
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 6.5e-61 238.8 165 70.3
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 3.2e-60 236.5 158 72.8
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 2.1e-59 233.8 200 69.5
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 6.3e-56 222.2 128 85.9
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 5.0e-53 212.6 161 70.2
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.2e-52 209.9 206 59.2
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 5.5e-52 209.1 225 54.2
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 2.6e-49 200.3 326 38.3
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 7.5e-49 198.7 203 54.2
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 1.3e-48 198.0 372 36.0
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 9.1e-47 191.8 172 58.7
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 3.8e-45 186.4 324 38.3
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 4.0e-42 176.4 118 74.6
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 4.0e-42 176.4 118 74.6
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.5e-41 172.2 114 75.4
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 4.9e-40 169.5 299 37.8
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 2.3e-37 160.6 104 78.8
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 4.2e-36 156.4 248 42.7
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 5.4e-31 139.4 106 70.8
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 7.0e-31 139.0 130 63.1
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 4.7e-27 126.3 272 37.1
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-25 120.9 178 42.1
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 9.8e-25 118.6 117 57.3
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 2.2e-24 117.5 120 55.0
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 9.5e-20 102.1 123 48.8
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 1.1e-18 98.6 324 29.3
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 2.6e-17 94.0 86 54.7
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 8.4e-08 62.4 246 25.6
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 3.2e-07 60.5 70 45.7
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 5.4e-07 59.7 55 60.0
BcaC02g08439 Brassica carinata HOM05D004482 ORTHO05D005212 1.2e-06 58.5 70 45.7
C07p07110 Brassica napus HOM05D000057 ORTHO05D005212 1.6e-06 58.2 91 44.0
BolC7t41130H Brassica oleracea HOM05D000057 ORTHO05D005212 1.6e-06 58.2 91 44.0
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 2.1e-06 57.8 58 55.2
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 7.8e-06 55.8 123 34.1


User provided reference genes

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