Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g07770 Coffea canephora HOM05D000595 ORTHO05D008454 3.4e-269 931.0 452 100.0
Dinv29591 Davidia involucrata HOM05D000595 ORTHO05D008454 7.5e-208 727.2 450 78.0
Prupe.1G006900 Prunus persica HOM05D000595 ORTHO05D008454 1.4e-201 706.4 451 74.3
CSS0010328 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D008454 4.0e-201 704.9 450 75.1
MD04G1008200 Malus domestica HOM05D000595 ORTHO05D008454 2.9e-199 698.7 453 72.6
RcHm_v2.0_Chr4g0415411 Rosa chinensis HOM05D000595 ORTHO05D008454 1.6e-197 693.0 442 74.7
Lj6C558G7 Lonicera japonica HOM05D000595 ORTHO05D008454 4.6e-197 691.4 418 78.2
Nn1g07860 Nelumbo nucifera HOM05D000595 ORTHO05D008454 6.0e-197 691.0 439 74.0
Lj6g0010121 Lotus japonicus HOM05D000595 ORTHO05D008454 1.7e-196 689.5 421 76.5
Solyc12g098360.2 Solanum lycopersicum HOM05D000595 ORTHO05D008454 1.5e-195 686.4 454 73.3
Ca_00886_v3 Cicer arietinum L. HOM05D000595 ORTHO05D001274 2.5e-195 685.6 418 75.1
PSO017G5401 Papaver somniferum HOM05D000595 ORTHO05D008454 2.5e-195 685.6 432 74.1
PSO063G0672 Papaver somniferum HOM05D000595 ORTHO05D008454 2.5e-195 685.6 424 74.8
CAN.G767.41 Capsicum annuum HOM05D000595 ORTHO05D008454 4.3e-195 684.9 453 73.5
Psat1g165160 Pisum sativum HOM05D000595 ORTHO05D008454 4.3e-195 684.9 431 73.5
Sc13g0000130 Simmondsia chinensis HOM05D000595 ORTHO05D008454 4.3e-195 684.9 448 72.8
Sopen12g033140 Solanum pennellii HOM05D000595 ORTHO05D008454 4.3e-195 684.9 444 74.1
HanXRQChr07g0185731 Helianthus annuus HOM05D000595 ORTHO05D008454 7.3e-195 684.1 424 76.2
Atru.chr4.1710 Acer truncatum HOM05D000595 ORTHO05D008454 1.6e-194 682.9 449 72.8
Peaxi162Scf00652g00421 Petunia axillaris HOM05D000595 ORTHO05D008454 2.1e-194 682.6 419 76.6
Migut.N00379 Erythranthe guttata HOM05D000595 ORTHO05D008454 8.0e-194 680.6 454 72.0
Potri.001G314700 Populus trichocarpa HOM05D000595 ORTHO05D008454 8.0e-194 680.6 422 74.4
Nitab4.5_0000850g0080 Nicotiana tabacum HOM05D000595 ORTHO05D008454 1.1e-193 680.2 454 73.3
FvH4_4g15840 Fragaria vesca HOM05D000595 ORTHO05D008454 1.8e-193 679.5 448 72.3
PGR083G2732 Punica granatum HOM05D000595 ORTHO05D008454 3.1e-193 678.7 452 72.3
Glyma.15G133500 Glycine max HOM05D000595 ORTHO05D008454 4.0e-193 678.3 420 74.8
TWI53G1083 Tripterygium wilfordii HOM05D000595 ORTHO05D008454 4.0e-193 678.3 442 72.9
TAR636G3484 Trochodendron aralioides HOM05D000595 ORTHO05D008454 5.2e-193 677.9 437 74.4
TPR.G22264 Trifolium pratense HOM05D000595 ORTHO05D008454 1.5e-192 676.4 427 72.8
Nitab4.5_0000676g0200 Nicotiana tabacum HOM05D000595 ORTHO05D008454 3.4e-192 675.2 443 73.1
Sed0004774 Sechium edule HOM05D000595 ORTHO05D008454 4.4e-192 674.9 441 72.8
Thecc.04G204800 Theobroma cacao HOM05D000595 ORTHO05D008454 4.4e-192 674.9 419 75.9
THA.LOC104801033 Tarenaya hassleriana HOM05D000595 ORTHO05D008454 7.5e-192 674.1 420 75.5
Nitab4.5_0005206g0070 Nicotiana tabacum HOM05D000595 ORTHO05D008454 9.8e-192 673.7 462 71.4
Duzib151G0403 Durio zibethinus HOM05D000595 ORTHO05D008454 4.9e-191 671.4 441 72.8
arahy.Tifrunner.gnm1.ann1.897VZR Arachis hypogaea HOM05D000595 ORTHO05D008454 6.4e-191 671.0 427 73.5
VMungo0540G0041 Vigna mungo HOM05D000595 ORTHO05D001274 6.4e-191 671.0 420 73.3
Aqoxy2G03878 Aquilegia oxysepala HOM05D000595 ORTHO05D008454 8.3e-191 670.6 419 73.7
CsaV3_1G042950 Cucumis sativus L. HOM05D000595 ORTHO05D008454 1.1e-190 670.2 441 71.9
arahy.Tifrunner.gnm1.ann1.G7HRZN Arachis hypogaea HOM05D000595 ORTHO05D008454 1.4e-190 669.8 427 73.5
Eucgr.H02785 Eucalyptus grandis HOM05D000595 ORTHO05D008454 3.2e-190 668.7 439 72.9
Gorai.011G158900 Gossypium raimondii HOM05D000595 ORTHO05D008454 5.4e-190 667.9 418 74.4
Thhalv10007628m.g Eutrema salsugineum HOM05D000595 ORTHO05D008454 2.7e-189 665.6 453 71.1
A10p03330 Brassica napus HOM05D000595 ORTHO05D008454 7.8e-189 664.1 455 71.0
BraA10t42609Z Brassica rapa HOM05D000595 ORTHO05D008454 7.8e-189 664.1 455 71.0
Carub.0001s0414 Capsella rubella HOM05D000595 ORTHO05D008454 1.7e-188 662.9 457 70.2
Lalb_Chr15g0088911 Lupinus albus HOM05D000595 ORTHO05D008454 3.0e-188 662.1 419 74.2
FAN12G2005 Fragaria x ananassa HOM05D000595 ORTHO05D008454 3.9e-188 661.8 418 74.4
Phvul.006G125200 Phaseolus vulgaris HOM05D000595 ORTHO05D008454 1.5e-187 659.8 420 73.1
AL1G14620 Arabidopsis lyrata HOM05D000595 ORTHO05D008454 1.9e-187 659.4 420 74.3
BolC5t29087H Brassica oleracea HOM05D000595 ORTHO05D008454 9.5e-187 657.1 454 70.9
AT1G04900 Arabidopsis thaliana HOM05D000595 ORTHO05D008454 6.2e-186 654.4 420 73.8
C05p03050 Brassica napus HOM05D000595 ORTHO05D008454 8.1e-186 654.1 456 70.4
ClCG05G003330 Citrullus lanatus HOM05D000595 ORTHO05D008454 8.1e-186 654.1 433 71.6
Aa31LG1G19900 Aethionema arabicum HOM05D000595 ORTHO05D008454 1.7e-183 646.4 418 72.7
Rhsim09G0055700 Rhododendron simsii HOM05D000595 ORTHO05D008454 4.9e-183 644.8 593 58.5
Sabra16G0199100 Salix brachista HOM05D000595 ORTHO05D008454 4.1e-182 641.7 499 63.7
MELO3C015176.2 Cucumis melo HOM05D000595 ORTHO05D008454 9.2e-182 640.6 467 66.6
Actinidia37010 Actinidia chinensis HOM05D000595 ORTHO05D008454 5.1e-180 634.8 390 77.4
vmacro00479 Vaccinium macrocarpon HOM05D000595 ORTHO05D008454 1.9e-179 632.9 549 60.5
EL10Ac3g07487 Beta vulgaris HOM05D000595 ORTHO05D008454 1.6e-178 629.8 422 70.9
Gohir.A10G123700 Gossypium hirsutum HOM05D000595 ORTHO05D008454 2.8e-178 629.0 419 71.4
HPP92_008949 Vanilla planifolia HOM05D000595 ORTHO05D008454 1.3e-175 620.2 433 67.7
CARHR004300 Cardamine hirsuta HOM05D000595 ORTHO05D008454 3.5e-173 612.1 420 70.7
Os01g0911900 Oryza sativa ssp. japonica HOM05D000595 ORTHO05D008454 1.7e-172 609.8 430 67.0
Ah.13g078130 Amaranthus hybridus HOM05D000595 ORTHO05D008454 3.0e-172 609.0 409 71.9
Ciclev10005247m.g Citrus clementina HOM05D000595 ORTHO05D008454 2.5e-171 605.9 362 77.6
Lsat_1_v5_gn_6_60501 Lactuca sativa HOM05D000595 ORTHO05D008454 3.1e-169 599.0 410 70.2
ECA233G5324 Erigeron canadensis HOM05D000595 ORTHO05D008454 9.0e-169 597.4 378 75.1
COL.COLO4_09879 Corchorus olitorius HOM05D000595 ORTHO05D008454 5.8e-168 594.7 370 75.1
ATR1145G018 Amborella trichopoda HOM05D000595 ORTHO05D008454 1.9e-166 589.7 408 67.2
FAN07G1333 Fragaria x ananassa HOM05D000595 ORTHO05D008454 1.6e-165 586.6 449 65.7
Gohir.D10G142300 Gossypium hirsutum HOM05D000595 ORTHO05D008454 6.0e-165 584.7 359 75.2
FAN19G1967 Fragaria x ananassa HOM05D000595 ORTHO05D008454 2.4e-161 572.8 448 64.3
Haze_11606 Corylus avellana HOM05D000595 ORTHO05D008454 3.5e-157 558.9 395 68.6
AUR62020816 Chenopodium quinoa HOM05D000595 ORTHO05D008454 2.5e-155 552.7 388 67.8
DCAR_002262 Daucus carota HOM05D000595 ORTHO05D008454 5.6e-155 551.6 362 73.5
Medtr2g031240 Medicago truncatula HOM05D000595 ORTHO05D008454 3.0e-148 529.3 351 69.2
GSVIVG01000528001 Vitis vinifera HOM05D000595 ORTHO05D008454 1.9e-147 526.6 373 69.2
QL06p024408 Quercus lobata HOM05D000595 ORTHO05D008454 1.3e-146 523.9 319 75.5
Manes.15G053200 Manihot esculenta HOM05D000595 ORTHO05D008454 3.4e-144 515.8 345 72.8
Sp1g03740 Schrenkiella parvula HOM05D000595 ORTHO05D008454 2.9e-143 512.7 383 65.5
Lj6A570G15 Lonicera japonica HOM05D000595 ORTHO05D008454 2.5e-142 509.6 424 61.8
SGA_v2.0_scaffold216G42389 Striga asiatica HOM05D000595 ORTHO05D008454 3.5e-141 505.8 336 70.8
AUR62032918 Chenopodium quinoa HOM05D000595 ORTHO05D008454 3.1e-129 466.1 376 63.0
CiPaw.01G121900 Carya illinoinensis HOM05D000595 ORTHO05D008454 6.5e-127 458.4 284 75.4
unitig_744.g24024 Utricularia gibba HOM05D000595 ORTHO05D008454 4.5e-120 435.6 316 66.8
Mapoly0090s0077 Marchantia polymorpha HOM05D000595 ORTHO05D008454 2.4e-113 413.3 408 49.8
SMO367G0911 Selaginella moellendorffii HOM05D000595 ORTHO05D008454 2.4e-113 413.3 403 47.4
AagrBONN_evm.TU.Sc2ySwM_344.3272 Anthoceros agrestis HOM05D000595 ORTHO05D008454 1.1e-110 404.4 405 49.6
Pp3c9_4240 Physcomitrium patens HOM05D000595 ORTHO05D008454 9.4e-110 401.4 419 45.8
Cpa.g.sc59.134 Carica papaya HOM05D000595 ORTHO05D008454 4.0e-100 369.4 233 73.4
Zm00001eb143660 Zea mays HOM05D000595 ORTHO05D008454 4.9e-90 335.9 217 70.5
FvH4_1g23291 Fragaria vesca HOM05D000595 ORTHO05D008454 6.8e-84 315.5 202 74.3
SEGI_10928 Sequoiadendron giganteum HOM05D000595 ORTHO05D008454 1.6e-77 294.3 231 61.5
Actinidia33191 Actinidia chinensis HOM05D000595 ORTHO05D008454 9.5e-62 241.9 200 64.0
MCO01G355 Micromonas commoda HOM05D000595 ORTHO05D008454 1.2e-61 241.5 429 37.3
CiPaw.01G121800 Carya illinoinensis HOM05D000595 ORTHO05D008454 1.4e-57 228.0 135 77.8
PRCOL_00005088 Prasinoderma coloniale HOM05D000595 ORTHO05D008454 6.0e-56 222.6 406 34.2
FAN17G1124 Fragaria x ananassa HOM05D000595 ORTHO05D008454 1.1e-54 218.4 126 81.0
Oeu016734.1 Olea europaea HOM05D000595 ORTHO05D008454 4.9e-50 203.0 227 49.3
Cre13.g584700 Chlamydomonas reinhardtii HOM05D000595 ORTHO05D008454 7.6e-43 179.1 408 31.6
CBR_g19088 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-41 174.9 177 47.5
Cfa022406 Carpinus fangiana HOM05D000595 ORTHO05D008454 5.4e-41 172.9 433 30.9
GSVIVG01000526001 Vitis vinifera HOM05D000595 ORTHO05D008454 1.5e-38 164.9 88 87.5
QL06p024418 Quercus lobata HOM05D000595 ORTHO05D008454 1.1e-33 148.7 137 58.4
CsaV3_6G039270 Cucumis sativus L. HOM05D000595 ORTHO05D008454 3.2e-33 147.1 89 73.0
EL10Ac4g09027 Beta vulgaris HOM05D000595 ORTHO05D008454 3.7e-29 133.7 115 57.4
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 4.9e-26 123.2 124 50.0
CsaV3_6G039250 Cucumis sativus L. HOM05D000595 ORTHO05D008454 2.3e-23 114.4 72 69.4
Nn1g07859 Nelumbo nucifera HOM05D000595 ORTHO05D008454 6.7e-23 112.8 83 65.1
unitig_744.g24023 Utricularia gibba HOM05D000595 ORTHO05D008454 2.2e-18 97.8 65 72.3
CDE09G0179 Ceratophyllum demersum HOM05D000595 ORTHO05D008454 1.0e-15 89.0 72 56.9
AUR62032919 Chenopodium quinoa HOM05D000595 ORTHO05D008454 3.0e-15 87.4 45 88.9
SEGI_41312 Sequoiadendron giganteum HOM05D000595 ORTHO05D008454 1.5e-14 85.1 56 64.3
Aqoxy3G00773 Aquilegia oxysepala HOM05D000595 ORTHO05D008454 1.1e-09 68.9 39 71.8
SEGI_06009 Sequoiadendron giganteum HOM05D000595 ORTHO05D008454 1.6e-08 65.1 88 42.0


User provided reference genes

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