Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g07590 Coffea canephora HOM05D007702 ORTHO05D009736 5.2e-145 517.7 263 100.0
CiPaw.11G097300 Carya illinoinensis HOM05D007702 ORTHO05D009736 6.4e-58 228.4 262 51.5
PGSC0003DMG400018255 Solanum tuberosum HOM05D007702 ORTHO05D009736 6.4e-58 228.4 236 54.2
AUR62001339 Chenopodium quinoa HOM05D007702 ORTHO05D009736 8.3e-58 228.0 243 52.7
Solyc01g102860.2 Solanum lycopersicum HOM05D007702 ORTHO05D009736 3.2e-57 226.1 240 53.8
Sopen01g045260 Solanum pennellii HOM05D007702 ORTHO05D009736 5.4e-57 225.3 258 51.9
Thecc.06G057000 Theobroma cacao HOM05D007702 ORTHO05D009736 1.2e-56 224.2 263 52.5
EL10Ac7g18156 Beta vulgaris HOM05D007702 ORTHO05D009736 6.0e-56 221.9 244 50.4
DCAR_007958 Daucus carota HOM05D007702 ORTHO05D009736 1.0e-55 221.1 238 54.6
MD09G1165300 Malus domestica HOM05D007702 ORTHO05D009736 1.3e-55 220.7 261 52.1
Manes.06G177600 Manihot esculenta HOM05D007702 ORTHO05D009736 1.7e-55 220.3 254 53.1
AUR62025666 Chenopodium quinoa HOM05D007702 ORTHO05D009736 8.6e-55 218.0 233 51.9
Potri.008G004800 Populus trichocarpa HOM05D007702 ORTHO05D009736 4.3e-54 215.7 270 50.4
Haze_08173 Corylus avellana HOM05D007702 ORTHO05D009736 5.6e-54 215.3 237 53.6
Ah.08g217790 Amaranthus hybridus HOM05D007702 ORTHO05D009736 1.6e-53 213.8 252 46.8
BraA06t23478Z Brassica rapa HOM05D007702 ORTHO05D009736 1.6e-53 213.8 254 51.2
Prupe.3G023000 Prunus persica HOM05D007702 ORTHO05D009736 1.6e-53 213.8 285 48.8
BcaB07g33554 Brassica carinata HOM05D007702 ORTHO05D009736 2.1e-53 213.4 254 51.6
A06p02690 Brassica napus HOM05D007702 ORTHO05D009736 1.8e-52 210.3 254 49.2
Cfa012496 Carpinus fangiana HOM05D007702 ORTHO05D009736 1.8e-52 210.3 237 52.3
Nitab4.5_0010634g0010 Nicotiana tabacum HOM05D007702 ORTHO05D009736 1.8e-52 210.3 231 53.7
Gohir.A10G002000 Gossypium hirsutum HOM05D007702 ORTHO05D009736 2.3e-52 209.9 266 47.7
MBI07_g12934_MAGBIO Magnolia biondii HOM05D007702 ORTHO05D009736 6.8e-52 208.4 195 61.0
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 2.0e-51 206.8 171 64.3
Sabra08G0002400 Salix brachista HOM05D007702 ORTHO05D009736 4.4e-51 205.7 266 49.2
TAR383G0542 Trochodendron aralioides HOM05D007702 ORTHO05D009736 7.5e-51 204.9 166 63.3
Duzib235G0870 Durio zibethinus HOM05D007702 ORTHO05D009736 9.8e-51 204.5 266 47.0
BcaC08g43279 Brassica carinata HOM05D007702 ORTHO05D009736 1.3e-50 204.1 242 50.8
C06p06290 Brassica napus HOM05D007702 ORTHO05D009736 1.3e-50 204.1 242 50.8
BolC6t35738H Brassica oleracea HOM05D007702 ORTHO05D009736 1.3e-50 204.1 242 50.8
Gohir.D10G002100 Gossypium hirsutum HOM05D007702 ORTHO05D009736 2.2e-50 203.4 262 46.6
Peaxi162Scf00051g00198 Petunia axillaris HOM05D007702 ORTHO05D009736 2.2e-50 203.4 247 47.8
Nitab4.5_0006053g0030 Nicotiana tabacum HOM05D007702 ORTHO05D009736 1.1e-49 201.1 256 50.0
Aa31LG10G3400 Aethionema arabicum HOM05D007702 ORTHO05D009736 1.4e-49 200.7 228 49.6
THA.LOC104817895 Tarenaya hassleriana HOM05D007702 ORTHO05D009736 9.2e-49 198.0 263 45.6
Gorai.011G002500 Gossypium raimondii HOM05D007702 ORTHO05D009736 1.2e-48 197.6 230 50.4
CSS0020400 Camellia sinensis var. sinensis HOM05D007702 ORTHO05D009736 2.0e-48 196.8 231 49.8
Eucgr.J03180 Eucalyptus grandis HOM05D007702 ORTHO05D009736 3.5e-48 196.1 230 48.3
TPR.G39495 Trifolium pratense HOM05D007702 ORTHO05D009736 3.5e-48 196.1 132 71.2
Aqoxy7G02739 Aquilegia oxysepala HOM05D007702 ORTHO05D009736 1.0e-47 194.5 231 48.1
Ciclev10032212m.g Citrus clementina HOM05D007702 ORTHO05D009736 2.3e-47 193.4 254 45.7
AT1G51080 Arabidopsis thaliana HOM05D007702 ORTHO05D009736 3.9e-47 192.6 258 45.7
Thhalv10012117m.g Eutrema salsugineum HOM05D007702 ORTHO05D009736 3.9e-47 192.6 248 48.8
PGR042G2668 Punica granatum HOM05D007702 ORTHO05D009736 8.6e-47 191.4 241 48.5
Cpa.g.sc155.12 Carica papaya HOM05D007702 ORTHO05D009736 1.1e-46 191.0 238 47.1
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 1.1e-46 191.0 239 48.1
Carub.0001s3998 Capsella rubella HOM05D007702 ORTHO05D009736 3.3e-46 189.5 247 45.3
CANSAT54G1387 Cannabis sativa HOM05D007702 ORTHO05D009736 5.6e-46 188.7 181 55.8
Atru.chr1.2666 Acer truncatum HOM05D007702 ORTHO05D009736 7.3e-46 188.3 274 43.1
CDE05G1247 Ceratophyllum demersum HOM05D007702 ORTHO05D009736 7.3e-46 188.3 242 47.5
COL.COLO4_31154 Corchorus olitorius HOM05D007702 ORTHO05D009736 7.3e-46 188.3 221 51.6
Migut.I01200 Erythranthe guttata HOM05D007702 ORTHO05D009736 7.3e-46 188.3 128 71.9
QL12p001257 Quercus lobata HOM05D007702 ORTHO05D009736 7.3e-46 188.3 220 50.5
Ca_00991_v3 Cicer arietinum L. HOM05D007702 ORTHO05D009736 9.5e-46 188.0 123 72.4
Nn2g12749 Nelumbo nucifera HOM05D007702 ORTHO05D009736 1.6e-45 187.2 185 55.1
RcHm_v2.0_Chr2g0149381 Rosa chinensis HOM05D007702 ORTHO05D009736 3.6e-45 186.0 235 49.4
AL1G58880 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 4.7e-45 185.7 246 45.5
CANSAT54G2309 Cannabis sativa HOM05D007702 ORTHO05D009736 6.2e-45 185.3 184 56.5
CARHR041100 Cardamine hirsuta HOM05D007702 ORTHO05D009736 6.2e-45 185.3 247 45.7
Sp1g37800 Schrenkiella parvula HOM05D007702 ORTHO05D009736 6.2e-45 185.3 272 43.8
CAN.G2401.1 Capsicum annuum HOM05D000005 ORTHO05D000012 1.4e-44 184.1 120 71.7
Psat5g305320 Pisum sativum HOM05D007702 ORTHO05D009736 4.0e-44 182.6 234 49.6
Medtr2g101430 Medicago truncatula HOM05D007702 ORTHO05D009736 1.2e-43 181.0 246 48.0
Oeu049633.1 Olea europaea HOM05D007702 ORTHO05D009736 3.4e-43 179.5 211 50.2
ClCG09G001650 Citrullus lanatus HOM05D007702 ORTHO05D009736 4.4e-43 179.1 170 54.7
MELO3C024282.2 Cucumis melo HOM05D007702 ORTHO05D009736 4.9e-42 175.6 126 66.7
PSO144G0036 Papaver somniferum HOM05D007702 ORTHO05D009736 4.9e-42 175.6 242 47.1
CsaV3_7G033690 Cucumis sativus L. HOM05D007702 ORTHO05D009736 6.4e-42 175.3 126 65.1
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 8.3e-42 174.9 228 46.5
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 8.3e-42 174.9 231 45.9
GSVIVG01029550001 Vitis vinifera HOM05D007702 ORTHO05D009736 1.1e-41 174.5 229 46.3
unitig_748.g7485 Utricularia gibba HOM05D007702 ORTHO05D009736 1.4e-41 174.1 223 47.1
arahy.Tifrunner.gnm1.ann1.TT2UX9 Arachis hypogaea HOM05D007702 ORTHO05D009736 1.2e-40 171.0 230 46.1
SGA_v2.0_scaffold71G23985 Striga asiatica HOM05D007702 ORTHO05D009736 2.1e-40 170.2 236 44.1
PSO423G0097 Papaver somniferum HOM05D007702 ORTHO05D009736 6.0e-40 168.7 241 46.9
Lsat_1_v5_gn_1_39381 Lactuca sativa HOM05D007702 ORTHO05D009736 3.9e-39 166.0 133 60.9
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 5.1e-39 165.6 233 43.8
FvH4_6g36940 Fragaria vesca HOM05D007702 ORTHO05D009736 3.3e-38 162.9 226 44.7
ATR1126G014 Amborella trichopoda HOM05D007702 ORTHO05D009736 2.6e-35 153.3 124 58.9
vmacro18744 Vaccinium macrocarpon HOM05D007702 ORTHO05D009736 8.4e-34 148.3 154 47.4
Rhsim08G0250300 Rhododendron simsii HOM05D007702 ORTHO05D009736 2.4e-33 146.7 270 39.3
SalBow6G4959 Salvia bowleyana HOM05D007702 ORTHO05D009736 1.6e-32 144.1 215 43.3
Os03g0138900 Oryza sativa ssp. japonica HOM05D007702 ORTHO05D009736 2.7e-32 143.3 245 40.0
Aa31LG6G10000 Aethionema arabicum HOM05D007702 ORTHO05D009736 7.8e-32 141.7 115 58.3
ECA236G1927 Erigeron canadensis HOM05D007702 ORTHO05D009736 1.1e-30 137.9 229 39.3
Gorai.011G091300 Gossypium raimondii HOM05D007702 ORTHO05D009736 9.6e-30 134.8 186 45.2
Mapoly0020s0094 Marchantia polymorpha HOM05D007702 ORTHO05D009736 1.8e-28 130.6 164 42.1
Pp3c5_18880 Physcomitrium patens HOM05D007702 ORTHO05D009736 3.4e-27 126.3 235 36.6
EL10Ac3g06847 Beta vulgaris HOM05D000495 ORTHO05D009736 2.2e-26 123.6 118 54.2
Zm00001eb230260 Zea mays HOM05D007702 ORTHO05D009736 1.6e-24 117.5 241 36.1
Aa31LG3G5120 Aethionema arabicum HOM05D007702 ORTHO05D009736 4.6e-24 115.9 156 45.5
AagrBONN_evm.TU.Sc2ySwM_228.5746 Anthoceros agrestis HOM05D007702 ORTHO05D009736 1.0e-23 114.8 245 34.3
SEGI_14624 Sequoiadendron giganteum HOM05D007702 ORTHO05D009736 5.6e-22 109.0 194 37.6
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 5.3e-20 102.4 196 38.3
Dinv37777 Davidia involucrata HOM05D000532 ORTHO05D002745 1.1e-09 68.2 152 34.2
FAN02G1843 Fragaria x ananassa HOM05D007702 ORTHO05D009736 1.4e-09 67.8 147 36.1
FAN10G3703 Fragaria x ananassa HOM05D007702 ORTHO05D009736 2.4e-09 67.0 147 36.7
AL3G14490 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 7.9e-08 62.0 57 54.4
FAN07G0391 Fragaria x ananassa HOM05D007702 ORTHO05D009736 1.0e-07 61.6 161 31.7
Actinidia21654 Actinidia chinensis HOM05D007715 ORTHO05D009760 3.9e-07 59.7 40 70.0


User provided reference genes

Program Settings