Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 3.2e-150 535.0 264 100.0
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 8.0e-93 344.4 264 63.6
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 1.8e-92 343.2 265 66.0
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 4.0e-92 342.0 263 66.2
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 2.0e-91 339.7 260 66.2
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 3.4e-91 339.0 265 63.0
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 3.4e-91 339.0 263 65.4
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 5.7e-91 338.2 303 58.1
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 2.2e-90 336.3 262 64.9
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.8e-90 335.9 263 65.0
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 1.8e-89 333.2 260 63.5
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.4e-89 332.8 263 65.0
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 5.4e-89 331.6 263 65.0
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 9.1e-89 330.9 260 63.8
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 2.0e-88 329.7 263 64.3
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 4.5e-88 328.6 262 63.7
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.9e-88 328.2 274 61.3
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 7.7e-88 327.8 266 63.9
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 6.5e-87 324.7 262 64.1
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 8.5e-87 324.3 262 64.5
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.5e-86 323.6 260 62.3
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 2.5e-86 322.8 266 61.3
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 2.5e-86 322.8 293 58.0
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 3.2e-86 322.4 258 62.4
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 5.5e-86 321.6 263 60.8
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 7.2e-86 321.2 261 63.2
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 7.2e-86 321.2 266 60.5
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 1.6e-85 320.1 263 61.6
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.6e-85 320.1 260 62.3
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 3.6e-85 318.9 262 62.2
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 3.6e-85 318.9 262 63.0
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 1.8e-84 316.6 263 61.2
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.8e-84 316.6 246 65.0
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.8e-84 316.6 247 64.8
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 3.0e-84 315.8 260 61.9
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 4.0e-84 315.5 266 62.8
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 8.8e-84 314.3 262 59.9
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 1.5e-83 313.5 263 60.1
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 3.4e-83 312.4 263 58.6
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 4.4e-83 312.0 262 59.5
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.4e-83 312.0 262 59.5
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 7.5e-83 311.2 262 59.5
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 1.3e-82 310.5 262 59.2
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 2.2e-82 309.7 260 60.8
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 2.8e-82 309.3 263 60.5
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 4.9e-82 308.5 259 58.3
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 8.3e-82 307.8 263 58.9
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 1.1e-81 307.4 264 58.3
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 1.1e-81 307.4 263 60.1
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 1.1e-81 307.4 257 61.9
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 1.1e-81 307.4 260 60.8
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 1.8e-81 306.6 222 68.0
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.4e-81 306.2 256 59.8
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.6e-80 303.5 261 60.5
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.7e-80 302.8 263 58.9
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 2.7e-80 302.8 261 60.9
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 2.7e-80 302.8 261 60.9
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 5.9e-80 301.6 263 57.4
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 5.9e-80 301.6 266 57.5
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.0e-79 300.8 253 59.3
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 1.0e-79 300.8 261 59.8
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 1.3e-79 300.4 242 60.7
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.3e-79 299.7 265 57.7
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 3.8e-79 298.9 263 57.4
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 3.8e-79 298.9 261 60.2
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 5.0e-79 298.5 260 59.6
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 6.6e-79 298.1 283 53.7
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.5e-78 297.0 260 58.1
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.5e-78 297.0 279 56.6
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 4.3e-78 295.4 261 58.2
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 4.3e-78 295.4 263 57.4
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 5.6e-78 295.0 263 56.7
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 7.3e-78 294.7 265 56.6
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 7.3e-78 294.7 220 64.5
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 1.2e-77 293.9 278 55.0
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.1e-77 293.1 216 64.4
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.1e-77 291.6 209 66.5
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.1e-77 291.6 209 66.5
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 1.4e-76 290.4 263 57.0
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 2.3e-76 289.7 275 56.4
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 4.0e-76 288.9 236 64.0
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 1.2e-75 287.3 238 58.8
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 1.5e-75 287.0 218 63.3
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 1.3e-74 283.9 305 49.8
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 2.2e-74 283.1 264 55.7
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 4.9e-74 282.0 264 55.3
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 2.4e-73 279.6 262 54.2
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 1.6e-72 276.9 262 53.4
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 2.7e-72 276.2 327 48.9
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.5e-72 275.8 200 68.0
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 1.5e-70 270.4 263 54.0
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 2.5e-70 269.6 221 57.5
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 3.3e-70 269.2 200 66.0
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 9.5e-70 267.7 240 57.1
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.6e-69 266.9 240 56.7
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 5.2e-68 261.9 208 61.1
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 9.8e-67 257.7 183 68.9
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 2.9e-66 256.1 221 59.3
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 1.9e-65 253.4 266 51.5
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 5.4e-65 251.9 305 47.9
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 2.7e-64 249.6 222 57.2
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 3.5e-64 249.2 181 64.1
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.7e-63 246.9 238 52.9
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 2.5e-62 243.0 232 53.0
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 2.0e-59 233.4 188 63.8
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 9.2e-57 224.6 221 54.8
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 2.1e-56 223.4 270 50.0
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 7.3e-54 214.9 227 48.5
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.6e-53 213.8 185 58.4
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 2.2e-50 203.4 173 62.4
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 2.9e-50 203.0 191 50.8
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 1.9e-49 200.3 215 45.6
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 2.4e-49 199.9 196 51.0
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 2.7e-48 196.4 177 56.5
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 6.0e-48 195.3 223 50.7
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 3.0e-47 193.0 179 55.3
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.1e-46 191.0 188 51.6
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 2.4e-44 183.3 141 59.6
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 2.4e-44 183.3 205 47.3
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.2e-43 181.0 154 59.1
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 2.6e-43 179.9 140 64.3
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 7.6e-43 178.3 169 56.2
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.1e-41 174.5 152 60.5
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 5.4e-41 172.2 218 42.7
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 5.6e-38 162.2 135 60.7
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 2.4e-36 156.8 128 57.0
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 2.0e-35 153.7 219 40.2
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 5.4e-33 145.6 139 54.0
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.1e-32 143.7 101 66.3
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 4.6e-32 142.5 197 39.1
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.9e-32 141.7 101 65.3
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.0e-31 141.4 101 65.3
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.3e-31 140.2 101 64.4
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.0e-31 139.8 120 56.7
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 2.5e-30 136.7 118 58.5
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.3e-29 134.4 356 28.9
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 6.9e-28 128.6 305 30.5
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.0e-28 128.3 152 47.4
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 3.8e-26 122.9 150 49.3
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.4e-26 122.1 242 34.7
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 7.1e-25 118.6 255 32.2
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.0e-23 113.2 67 67.2
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.9e-23 112.8 67 70.1
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.3e-22 109.8 67 67.2
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 1.2e-19 101.3 104 50.0
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.9e-18 96.7 80 61.2
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 4.2e-17 92.8 78 57.7
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 4.2e-17 92.8 70 65.7
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 2.1e-16 90.5 90 50.0
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.6e-16 89.4 84 53.6
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 5.1e-15 85.9 74 55.4
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 1.6e-13 80.9 82 48.8
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 3.7e-13 79.7 63 55.6
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 1.1e-12 78.2 68 60.3
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 4.1e-12 76.3 59 57.6
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 4.5e-11 72.8 85 49.4
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 1.1e-09 68.2 42 69.0
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 1.4e-09 67.8 87 46.0
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 1.3e-07 61.2 48 54.2
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 6.7e-07 58.9 60 46.7


User provided reference genes

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