Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g07410 Coffea canephora HOM05D005849 ORTHO05D004704 5.6e-156 554.3 292 100.0
Dinv26604 Davidia involucrata HOM05D005849 ORTHO05D004704 1.1e-37 161.4 292 42.5
Thecc.01G196200 Theobroma cacao HOM05D005849 ORTHO05D004704 2.7e-33 146.7 169 52.1
Prupe.3G197400 Prunus persica HOM05D005849 ORTHO05D004704 4.3e-31 139.4 272 39.0
Lj8P136T22 Lonicera japonica HOM05D005849 ORTHO05D004704 3.7e-30 136.3 296 39.9
Manes.12G064702 Manihot esculenta HOM05D005849 ORTHO05D004704 5.3e-29 132.5 126 57.9
Duzib133G0645 Durio zibethinus HOM05D005849 ORTHO05D004704 1.2e-28 131.3 281 39.1
QL04p068477 Quercus lobata HOM05D005849 ORTHO05D004704 2.6e-28 130.2 127 59.1
Manes.13G061900 Manihot esculenta HOM05D005849 ORTHO05D004704 3.4e-28 129.8 186 44.6
MD17G1117100 Malus domestica HOM05D005849 ORTHO05D004704 6.4e-27 125.6 148 53.4
TAR629G2787 Trochodendron aralioides HOM05D005849 ORTHO05D004704 2.4e-26 123.6 123 61.0
MD09G1126800 Malus domestica HOM05D005849 ORTHO05D004704 7.1e-26 122.1 267 39.0
Nn1g03187 Nelumbo nucifera HOM05D005849 ORTHO05D004704 2.1e-25 120.6 147 54.4
TAR629G2911 Trochodendron aralioides HOM05D005849 ORTHO05D004704 3.5e-25 119.8 111 60.4
Duzib138G1177 Durio zibethinus HOM05D005849 ORTHO05D004704 4.6e-25 119.4 303 34.3
Solyc07g045450.1 Solanum lycopersicum HOM05D005849 ORTHO05D004704 6.0e-25 119.0 135 57.0
Sopen07g023990 Solanum pennellii HOM05D005849 ORTHO05D004704 6.0e-25 119.0 135 57.0
Rhsim06G0176600 Rhododendron simsii HOM05D005849 ORTHO05D004704 1.8e-24 117.5 126 57.9
PSO541G2883 Papaver somniferum HOM05D005849 ORTHO05D004704 5.1e-24 115.9 171 47.4
Nitab4.5_0000006g0660 Nicotiana tabacum HOM05D005849 ORTHO05D004704 6.7e-24 115.5 299 36.5
RcHm_v2.0_Chr2g0155981 Rosa chinensis HOM05D005849 ORTHO05D004704 6.7e-24 115.5 276 36.6
COL.COLO4_19617 Corchorus olitorius HOM05D005849 ORTHO05D004704 8.7e-24 115.2 313 36.7
Gohir.A07G169800 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.1e-23 114.8 143 50.3
Sabra14G0127500 Salix brachista HOM05D005849 ORTHO05D004704 2.5e-23 113.6 289 32.9
Potri.014G167700 Populus trichocarpa HOM05D005849 ORTHO05D004704 7.4e-23 112.1 298 33.9
PSO675G3647 Papaver somniferum HOM05D005849 ORTHO05D004704 9.6e-23 111.7 188 41.5
Actinidia07866 Actinidia chinensis HOM05D005849 ORTHO05D004704 3.7e-22 109.8 148 48.0
Gohir.A07G192100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 3.7e-22 109.8 280 35.0
Cfa014225 Carpinus fangiana HOM05D005849 ORTHO05D004704 4.8e-22 109.4 94 68.1
Gohir.D07G171100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 4.8e-22 109.4 143 51.0
TWI36G1699 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 6.2e-22 109.0 279 36.9
Gorai.001G222200 Gossypium raimondii HOM05D005849 ORTHO05D004704 1.1e-21 108.2 280 34.6
Haze_12628 Corylus avellana HOM05D005849 ORTHO05D004704 1.8e-21 107.5 145 51.0
CiPaw.03G281900 Carya illinoinensis HOM05D005849 ORTHO05D004704 3.1e-21 106.7 187 41.7
Gohir.D07G198400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 3.1e-21 106.7 280 34.3
Gorai.001G191400 Gossypium raimondii HOM05D005849 ORTHO05D004704 3.1e-21 106.7 141 48.2
Nn1g07503 Nelumbo nucifera HOM05D005849 ORTHO05D004704 5.3e-21 105.9 126 52.4
Actinidia18832 Actinidia chinensis HOM05D005849 ORTHO05D004704 6.9e-21 105.5 122 54.9
Lsat_1_v5_gn_9_103781 Lactuca sativa HOM05D005849 ORTHO05D004704 1.2e-20 104.8 128 53.9
FAN05G2424 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.5e-20 104.4 168 48.2
Ciclev10018021m.g Citrus clementina HOM05D005849 ORTHO05D004704 2.0e-20 104.0 129 53.5
FvH4_6g40610 Fragaria vesca HOM05D005849 ORTHO05D004704 2.6e-20 103.6 168 47.6
FAN14G3262 Fragaria x ananassa HOM05D005849 ORTHO05D004704 2.6e-20 103.6 168 47.6
TWI18G0644 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 2.6e-20 103.6 302 33.8
Sed0012118 Sechium edule HOM05D005849 ORTHO05D004704 3.4e-20 103.2 135 50.4
Aqoxy4G02338 Aquilegia oxysepala HOM05D005849 ORTHO05D004704 5.8e-20 102.4 299 34.4
Oeu064351.1 Olea europaea HOM05D005849 ORTHO05D004704 1.3e-19 101.3 122 50.0
FAN02G2959 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.7e-19 100.9 178 45.5
MBI19_g14891_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 2.9e-19 100.1 131 47.3
CiPaw.04G197000 Carya illinoinensis HOM05D005849 ORTHO05D004704 3.8e-19 99.8 299 31.8
FAN09G2506 Fragaria x ananassa HOM05D005849 ORTHO05D004704 3.8e-19 99.8 276 34.4
Glyma.13G006500 Glycine max HOM05D005849 ORTHO05D004704 4.9e-19 99.4 164 42.1
MELO3C025957.2 Cucumis melo HOM05D005849 ORTHO05D004704 1.1e-18 98.2 133 50.4
CsaV3_6G009640 Cucumis sativus L. HOM05D005849 ORTHO05D004704 1.1e-18 98.2 134 50.0
Phvul.007G121090 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 1.1e-18 98.2 133 49.6
PGR083G2364 Punica granatum HOM05D005849 ORTHO05D004704 2.5e-18 97.1 150 48.7
Dinv21298 Davidia involucrata HOM05D005849 ORTHO05D004704 3.2e-18 96.7 291 34.0
ECA240G3450 Erigeron canadensis HOM05D005849 ORTHO05D004704 5.5e-18 95.9 128 50.0
Medtr5g098480 Medicago truncatula HOM05D005849 ORTHO05D004704 5.5e-18 95.9 147 48.3
Cpa.g.sc136.30 Carica papaya HOM05D005849 ORTHO05D004704 1.2e-17 94.7 298 32.9
DCAR_012893 Daucus carota HOM05D005849 ORTHO05D004704 1.2e-17 94.7 125 50.4
DCAR_019680 Daucus carota HOM05D005849 ORTHO05D004704 2.1e-17 94.0 129 50.4
Sed0027972 Sechium edule HOM05D005849 ORTHO05D004704 3.5e-17 93.2 125 49.6
Ah.01g002540 Amaranthus hybridus HOM05D005849 ORTHO05D004704 7.9e-17 92.0 118 50.0
AUR62015005 Chenopodium quinoa HOM05D005849 ORTHO05D004704 1.3e-16 91.3 165 46.1
MBI16_g22138_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 1.3e-16 91.3 298 32.2
AUR62029117 Chenopodium quinoa HOM05D005849 ORTHO05D004704 2.3e-16 90.5 152 44.1
Lj1P796T11 Lonicera japonica HOM05D005849 ORTHO05D004704 2.3e-16 90.5 127 52.0
Ca_06483_v3 Cicer arietinum L. HOM05D005849 ORTHO05D004704 3.0e-16 90.1 132 47.0
Sc20g0004000 Simmondsia chinensis HOM05D005849 ORTHO05D004704 8.7e-16 88.6 123 48.8
EL10Ac9g22679 Beta vulgaris HOM05D005849 ORTHO05D004704 1.1e-15 88.2 248 38.3
MSTRG.12249 Avicennia marina HOM05D005849 ORTHO05D004704 1.5e-15 87.8 284 32.7
Duzib213G0789 Durio zibethinus HOM05D005849 ORTHO05D004704 1.9e-15 87.4 151 46.4
TPR.G35904 Trifolium pratense HOM05D005849 ORTHO05D004704 1.9e-15 87.4 111 49.5
Glyma.20G062100 Glycine max HOM05D005849 ORTHO05D004704 3.3e-15 86.7 170 37.6
LjContig00081g0015024 Lotus japonicus HOM05D005849 ORTHO05D004704 7.4e-15 85.5 132 47.0
CiPaw.11G203200 Carya illinoinensis HOM05D005849 ORTHO05D004704 9.7e-15 85.1 163 42.3
Actinidia35203 Actinidia chinensis HOM05D005849 ORTHO05D004704 2.8e-14 83.6 287 32.4
VMungo0540G2501 Vigna mungo HOM05D005849 ORTHO05D004704 2.8e-14 83.6 90 58.9
Medtr3g082780 Medicago truncatula HOM05D005849 ORTHO05D004704 6.3e-14 82.4 90 55.6
Psat2g002880 Pisum sativum HOM05D005849 ORTHO05D004704 6.3e-14 82.4 126 46.8
Sabra16G0240400 Salix brachista HOM05D005849 ORTHO05D004704 1.1e-13 81.6 136 43.4
THA.LOC104808845 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 1.4e-13 81.3 95 50.5
Peaxi162Scf00802g00130 Petunia axillaris HOM05D005849 ORTHO05D004704 1.8e-13 80.9 83 57.8
Psat5g104280 Pisum sativum HOM05D005849 ORTHO05D004704 2.4e-13 80.5 128 46.9
Nitab4.5_0001701g0180 Nicotiana tabacum HOM05D005849 ORTHO05D004704 4.1e-13 79.7 215 36.7
Lalb_Chr10g0107651 Lupinus albus HOM05D005849 ORTHO05D004704 5.3e-13 79.3 126 48.4
Ciclev10009298m.g Citrus clementina HOM05D005849 ORTHO05D004704 1.2e-12 78.2 282 31.2
Nitab4.5_0004125g0020 Nicotiana tabacum HOM05D005849 ORTHO05D004704 2.6e-12 77.0 215 38.6
Thecc.07G014700 Theobroma cacao HOM05D005849 ORTHO05D004704 3.4e-12 76.6 151 39.1
TPR.G11064 Trifolium pratense HOM05D005849 ORTHO05D004704 4.5e-12 76.3 87 51.7
Aa31sc203G20 Aethionema arabicum HOM05D009495 ORTHO05D004704 5.9e-12 75.9 87 50.6
Sp3g23270 Schrenkiella parvula HOM05D009495 ORTHO05D004704 5.9e-12 75.9 122 46.7
AL3G42130 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 7.6e-12 75.5 107 46.7
Gorai.002G099600 Gossypium raimondii HOM05D005849 ORTHO05D004704 1.0e-11 75.1 137 40.9
CARHR102390 Cardamine hirsuta HOM05D009495 ORTHO05D004704 1.3e-11 74.7 124 46.0
Lj8P178T38 Lonicera japonica HOM05D005849 ORTHO05D004704 1.3e-11 74.7 107 48.6
Gohir.A01G091100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.7e-11 74.3 172 37.2
AT2G04480 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 2.2e-11 73.9 124 45.2
Carub.0003s2613 Capsella rubella HOM05D009495 ORTHO05D004704 2.2e-11 73.9 100 49.0
arahy.Tifrunner.gnm1.ann1.S46AGL Arachis hypogaea HOM05D005849 ORTHO05D004704 2.9e-11 73.6 125 44.8
ClCG02G009210 Citrullus lanatus HOM05D005849 ORTHO05D004704 2.9e-11 73.6 131 42.7
Gohir.D01G076400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 2.9e-11 73.6 182 35.2
Lsat_1_v5_gn_5_122020 Lactuca sativa HOM05D005849 ORTHO05D004704 2.9e-11 73.6 117 45.3
THA.LOC104815364 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 3.8e-11 73.2 85 52.9
Actinidia09789 Actinidia chinensis HOM05D005849 ORTHO05D004704 6.5e-11 72.4 135 40.0
Prupe.4G242400 Prunus persica HOM05D005849 ORTHO05D004704 8.5e-11 72.0 208 35.6
CANSAT11G2057 Cannabis sativa HOM05D005849 ORTHO05D004704 1.4e-10 71.2 138 39.1
Nn1g04368 Nelumbo nucifera HOM05D005849 ORTHO05D004704 2.5e-10 70.5 113 43.4
BcaB02g08048 Brassica carinata HOM05D009495 ORTHO05D004704 4.2e-10 69.7 85 51.8
BraA07t28463Z Brassica rapa HOM05D009495 ORTHO05D004704 7.2e-10 68.9 89 49.4
Potri.001G367100 Populus trichocarpa HOM05D005849 ORTHO05D004704 9.3e-10 68.6 186 35.5
Carub.0007s3167 Capsella rubella HOM05D009495 ORTHO05D004704 1.2e-09 68.2 87 49.4
Lj6g0007370 Lotus japonicus HOM05D005849 ORTHO05D004704 1.6e-09 67.8 78 50.0
Sp7g06260 Schrenkiella parvula HOM05D009495 ORTHO05D004704 1.6e-09 67.8 92 48.9
BcaC06g35871 Brassica carinata HOM05D009495 ORTHO05D004704 2.1e-09 67.4 89 49.4
A04p10030 Brassica napus HOM05D009495 ORTHO05D004704 2.1e-09 67.4 87 49.4
C07p10220 Brassica napus HOM05D009495 ORTHO05D004704 2.1e-09 67.4 89 49.4
BolC7t41473H Brassica oleracea HOM05D009495 ORTHO05D004704 2.1e-09 67.4 89 49.4
BraA04t16665Z Brassica rapa HOM05D009495 ORTHO05D004704 2.1e-09 67.4 87 49.4
arahy.Tifrunner.gnm1.ann1.8Y07GA Arachis hypogaea HOM05D005849 ORTHO05D004704 2.7e-09 67.0 124 41.9
A07p06700 Brassica napus HOM05D009495 ORTHO05D004704 3.6e-09 66.6 89 48.3
Thhalv10002998m.g Eutrema salsugineum HOM05D009495 ORTHO05D004704 4.6e-09 66.2 115 44.3
TWI38G0138 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 4.6e-09 66.2 151 36.4
AT5G35870 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 6.1e-09 65.9 87 48.3
Glyma.08G329000 Glycine max HOM05D005849 ORTHO05D004704 6.1e-09 65.9 78 48.7
Cpa.g.sc12.153 Carica papaya HOM05D005849 ORTHO05D004704 7.9e-09 65.5 133 45.1
BcaB06g26787 Brassica carinata HOM05D009495 ORTHO05D004704 1.3e-08 64.7 87 47.1
Phvul.006G056700 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 1.3e-08 64.7 89 44.9
QL08p004345 Quercus lobata HOM05D005849 ORTHO05D004704 1.3e-08 64.7 156 37.8
QL11p054311 Quercus lobata HOM05D005849 ORTHO05D004704 1.3e-08 64.7 156 37.8
BcaC04g21895 Brassica carinata HOM05D009495 ORTHO05D004704 2.3e-08 63.9 104 43.3
C09p26070 Brassica napus HOM05D009495 ORTHO05D004704 2.3e-08 63.9 104 43.3
BolC9t55510H Brassica oleracea HOM05D009495 ORTHO05D004704 2.3e-08 63.9 104 43.3
AL7G44750 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 3.0e-08 63.5 87 47.1
Manes.03G140700 Manihot esculenta HOM05D005849 ORTHO05D004704 3.0e-08 63.5 171 33.3
VMungo0540G1302 Vigna mungo HOM05D005849 ORTHO05D004704 3.9e-08 63.2 90 45.6
Manes.03G140566 Manihot esculenta HOM05D005849 ORTHO05D004704 8.7e-08 62.0 168 33.9
arahy.Tifrunner.gnm1.ann1.715EVP Arachis hypogaea HOM05D005849 ORTHO05D004704 1.9e-07 60.8 125 36.0
BcaC02g09504 Brassica carinata HOM05D009495 ORTHO05D004704 2.5e-07 60.5 87 47.1
Thhalv10005712m.g Eutrema salsugineum HOM05D009495 ORTHO05D004704 2.5e-07 60.5 123 40.7
CARHR216740 Cardamine hirsuta HOM05D009495 ORTHO05D004704 4.3e-07 59.7 93 43.0
Glyma.18G077800 Glycine max HOM05D014115 ORTHO05D004704 4.3e-07 59.7 78 46.2
ATR0827G126 Amborella trichopoda HOM05D005849 ORTHO05D004704 5.7e-07 59.3 84 41.7
A09p20650 Brassica napus HOM05D009495 ORTHO05D004704 5.7e-07 59.3 128 39.8
C04p43510 Brassica napus HOM05D009495 ORTHO05D004704 5.7e-07 59.3 88 48.9
BraA09t37669Z Brassica rapa HOM05D009495 ORTHO05D004704 5.7e-07 59.3 128 39.8
Manes.15G060700 Manihot esculenta HOM05D005849 ORTHO05D004704 9.7e-07 58.5 185 30.8
CiPaw.12G137700 Carya illinoinensis HOM05D005849 ORTHO05D004704 1.3e-06 58.2 179 35.2
Os12g0498900 Oryza sativa ssp. japonica HOM05D005849 ORTHO05D004704 1.3e-06 58.2 134 37.3
Haze_09816 Corylus avellana HOM05D005849 ORTHO05D004704 1.6e-06 57.8 133 39.8
arahy.Tifrunner.gnm1.ann1.UTL0P7 Arachis hypogaea HOM05D005849 ORTHO05D004704 6.3e-06 55.8 153 31.4


User provided reference genes

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