Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 1.2e-291 1005.7 502 100.0
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 2.4e-207 725.7 509 70.7
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 4.6e-206 721.5 511 71.4
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 2.1e-203 712.6 509 70.1
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 8.3e-200 700.7 512 66.8
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 1.9e-199 699.5 511 68.7
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.4e-199 698.0 510 68.4
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 1.2e-198 696.8 510 68.2
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 1.6e-198 696.4 512 67.4
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 3.5e-198 695.3 511 68.7
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.0e-197 693.7 510 68.2
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 1.0e-197 693.7 509 67.8
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 3.9e-197 691.8 510 68.4
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 7.3e-196 687.6 510 68.2
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 7.3e-196 687.6 506 68.4
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.2e-195 686.8 515 67.0
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.1e-195 686.0 518 67.0
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 6.2e-195 684.5 568 62.7
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 6.2e-195 684.5 512 67.4
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.4e-194 683.3 506 66.8
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 1.8e-194 682.9 505 66.3
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.8e-194 682.9 506 68.0
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.8e-194 682.9 506 67.6
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 2.4e-194 682.6 509 67.2
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 4.0e-194 681.8 515 67.0
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 6.8e-194 681.0 508 67.5
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 8.9e-194 680.6 502 68.5
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.5e-193 679.9 509 66.8
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 1.5e-193 679.9 506 66.4
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.0e-193 679.5 517 66.0
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 5.8e-193 677.9 506 66.8
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 5.8e-193 677.9 514 66.7
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 5.8e-193 677.9 509 66.6
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 1.7e-192 676.4 534 64.4
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 4.9e-192 674.9 514 65.4
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 8.4e-192 674.1 507 67.9
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 7.1e-191 671.0 513 65.7
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 4.6e-190 668.3 509 65.2
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 3.0e-189 665.6 510 64.9
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 3.9e-189 665.2 509 66.2
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 5.6e-188 661.4 511 65.0
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.3e-188 661.0 508 65.6
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.3e-188 661.0 508 65.6
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 7.3e-188 661.0 511 65.8
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.6e-187 659.8 511 64.8
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 2.1e-187 659.4 500 64.4
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.2e-187 657.9 512 65.4
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 8.1e-187 657.5 506 65.8
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.1e-186 657.1 511 64.6
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 1.4e-186 656.8 511 65.2
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 1.8e-186 656.4 517 64.2
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 3.1e-186 655.6 506 66.4
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 4.0e-186 655.2 511 65.6
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 5.2e-186 654.8 507 64.5
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 9.0e-186 654.1 508 64.4
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 9.0e-186 654.1 508 64.4
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 9.0e-186 654.1 511 64.6
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 9.0e-186 654.1 505 65.0
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.5e-185 653.3 510 64.5
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 2.0e-185 652.9 514 64.4
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 3.4e-185 652.1 507 64.3
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 3.4e-185 652.1 526 63.5
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 7.6e-185 651.0 493 66.3
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 7.6e-185 651.0 594 57.7
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.3e-184 650.2 506 63.4
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 1.7e-184 649.8 493 66.3
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 1.7e-184 649.8 505 63.6
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 8.4e-184 647.5 510 63.5
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.4e-183 646.7 506 63.0
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 1.4e-183 646.7 509 64.2
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 9.3e-183 644.0 515 62.9
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.6e-182 643.3 509 64.0
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 2.1e-182 642.9 504 64.1
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 2.1e-182 642.9 509 64.2
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 2.1e-182 642.9 512 63.3
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 1.7e-181 639.8 507 62.5
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 1.5e-180 636.7 510 64.1
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 2.5e-180 636.0 459 67.8
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 2.5e-180 636.0 458 69.2
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 4.3e-180 635.2 512 63.1
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 3.6e-179 632.1 508 63.6
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 6.2e-179 631.3 510 62.5
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-178 630.6 547 60.0
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 1.5e-177 626.7 432 71.3
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 4.5e-177 625.2 492 64.8
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 2.2e-176 622.9 439 69.9
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 4.9e-176 621.7 456 67.1
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 4.2e-175 618.6 509 60.5
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 1.3e-173 613.6 498 61.8
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 9.0e-170 600.9 502 60.4
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 7.6e-169 597.8 432 68.1
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 1.3e-168 597.0 480 62.1
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.9e-167 593.2 468 64.1
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 3.2e-167 592.4 549 56.8
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 2.7e-166 589.3 480 62.9
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 3.5e-166 589.0 456 62.7
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.8e-165 586.6 485 61.2
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.3e-163 580.5 468 63.2
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.6e-163 580.1 511 58.3
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.9e-160 569.3 423 66.7
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 7.1e-159 564.7 550 55.1
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 2.4e-154 549.7 461 59.4
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 4.5e-153 545.4 483 58.0
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 2.2e-152 543.1 426 64.1
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.5e-145 520.4 415 64.3
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 2.6e-145 519.6 371 69.0
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 1.1e-143 514.2 355 71.0
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 3.2e-143 512.7 504 54.2
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 3.7e-139 499.2 379 66.8
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.0e-132 476.9 448 56.2
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 8.2e-123 444.9 384 58.9
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 9.1e-122 441.4 526 46.0
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 3.8e-120 436.0 496 50.8
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 4.5e-113 412.5 436 50.0
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 4.2e-111 406.0 391 56.8
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.9e-107 392.5 369 55.3
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.3e-104 384.4 494 44.7
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 5.4e-98 362.5 328 59.5
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 3.7e-91 339.7 276 58.3
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 3.2e-90 336.7 677 36.0
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 9.2e-74 282.0 459 38.6
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 2.7e-73 280.4 514 37.0
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 3.8e-67 260.0 447 38.9
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 4.2e-66 256.5 239 56.9
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 1.5e-60 238.0 368 38.3
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 1.4e-58 231.5 209 56.5
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 5.1e-56 223.0 497 33.0
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.6e-54 218.0 156 69.2
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 8.7e-40 169.1 212 43.4
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.2e-36 158.7 102 75.5
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 1.4e-34 151.8 249 39.8
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 6.1e-33 146.4 91 78.0
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 2.0e-31 141.4 121 61.2
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 3.9e-24 117.1 106 61.3
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 3.3e-23 114.0 341 26.1
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 8.8e-16 89.4 63 69.8
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 7.7e-12 76.3 49 77.6
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 7.2e-10 69.7 68 60.3
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 8.0e-09 66.2 49 57.1
Solyc04g025650.3 Solanum lycopersicum HOM05D000686 ORTHO05D000512 1.3e-06 58.9 263 26.2
Sopen04g013330 Solanum pennellii HOM05D000686 ORTHO05D000512 3.7e-06 57.4 249 26.5
Nitab4.5_0000925g0140 Nicotiana tabacum HOM05D000686 ORTHO05D000512 4.8e-06 57.0 245 26.1


User provided reference genes

Program Settings