Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 0.0e+00 1909.4 1002 100.0
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 0.0e+00 1092.8 954 59.6
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 1.6e-306 1056.2 1042 54.7
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 2.5e-304 1048.9 1023 55.5
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 2.5e-304 1048.9 1008 55.8
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.5e-301 1039.6 952 56.8
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 8.3e-300 1033.9 1020 54.7
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.6e-295 1019.6 1065 53.0
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 2.3e-294 1015.8 1024 54.3
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 6.8e-294 1014.2 1028 54.1
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 1.2e-290 1003.4 954 55.7
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 3.5e-290 1001.9 1023 52.5
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 5.6e-288 994.6 889 58.4
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 5.6e-288 994.6 1036 52.9
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 2.1e-287 992.6 983 54.4
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 8.1e-287 990.7 1022 52.7
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 8.9e-286 987.3 1068 50.7
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 1.4e-283 979.9 962 54.9
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 9.2e-283 977.2 1031 52.8
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 4.3e-280 968.4 1023 52.3
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 1.6e-279 966.5 1020 50.8
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 1.3e-276 956.8 1021 50.4
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 2.2e-276 956.1 1022 51.5
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 1.9e-275 953.0 1015 51.0
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 2.4e-275 952.6 1024 51.6
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 7.1e-275 951.0 1067 50.5
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 7.8e-274 947.6 1026 49.9
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 3.9e-273 945.3 1028 49.8
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 2.5e-272 942.6 883 55.7
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 8.1e-271 937.6 1024 50.7
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 6.8e-270 934.5 1016 50.5
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 2.0e-269 932.9 1024 49.7
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 9.3e-267 924.1 1003 49.9
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 2.7e-266 922.5 1036 49.3
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.0e-265 920.6 1025 49.6
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 1.7e-265 919.8 1008 49.5
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 3.0e-265 919.1 1011 49.5
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 1.3e-263 913.7 917 52.8
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 6.9e-262 907.9 838 57.5
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 3.4e-261 905.6 1073 47.9
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 1.9e-259 899.8 941 52.6
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 2.1e-258 896.3 1002 49.4
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 1.7e-257 893.3 1024 47.6
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 2.3e-257 892.9 1033 47.7
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 3.3e-256 889.0 776 58.9
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 1.8e-249 866.7 1011 45.6
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.5e-248 863.6 1052 46.8
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 8.1e-247 857.8 912 50.9
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 1.4e-243 847.0 1018 46.1
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 1.9e-243 846.7 1022 44.9
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 9.6e-240 834.3 1000 47.3
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 4.5e-237 825.5 1027 44.6
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 3.8e-236 822.4 906 49.0
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 3.6e-234 815.8 1011 45.3
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 4.6e-234 815.5 954 45.5
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 4.6e-234 815.5 1014 44.4
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 1.3e-233 813.9 960 47.6
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 7.4e-232 808.1 1023 43.8
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 1.6e-231 807.0 1002 46.6
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 5.3e-230 802.0 968 44.3
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 2.0e-229 800.0 968 44.4
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 7.7e-229 798.1 1020 44.2
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 1.0e-228 797.7 1008 45.5
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 3.8e-228 795.8 909 47.4
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 5.0e-228 795.4 1023 43.9
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 6.5e-228 795.0 1008 43.4
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 4.2e-227 792.3 1050 42.7
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 6.7e-225 785.0 1026 44.2
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 8.2e-223 778.1 926 45.2
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 2.4e-222 776.5 918 45.9
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 9.1e-222 774.6 1004 41.8
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 2.2e-220 770.0 1005 42.0
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 1.9e-219 766.9 1011 41.5
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 3.2e-219 766.1 916 46.2
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 4.2e-219 765.8 1023 41.3
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 1.4e-217 760.8 1007 41.8
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 1.4e-217 760.8 1012 41.3
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 1.8e-217 760.4 1005 40.9
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 2.3e-217 760.0 1013 41.0
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 6.7e-217 758.4 1047 41.6
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 8.8e-217 758.1 1043 41.9
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 1.5e-216 757.3 1003 41.5
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 2.6e-216 756.5 1007 41.6
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 2.6e-216 756.5 1022 41.9
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 1.0e-212 744.6 933 44.1
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 3.8e-212 742.7 1004 40.3
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 4.1e-206 722.6 1053 42.0
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 2.0e-205 720.3 1050 42.7
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 7.5e-200 701.8 958 40.6
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 5.0e-196 689.1 691 53.8
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 5.2e-193 679.1 947 44.0
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 2.0e-192 677.2 912 40.9
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 3.5e-181 639.8 715 49.0
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 3.0e-180 636.7 663 51.3
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 8.0e-178 628.6 1031 37.1
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 2.3e-177 627.1 834 43.2
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 4.1e-174 616.3 815 41.3
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 1.7e-159 567.8 1060 35.6
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 1.3e-156 558.1 897 37.5
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 2.4e-150 537.3 922 36.6
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 1.9e-118 431.4 639 37.6
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 2.5e-70 271.6 1019 27.2
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 8.6e-55 219.9 656 28.4
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.5e-54 219.2 316 42.4
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 3.1e-52 211.5 266 42.1
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 8.9e-52 209.9 708 26.7
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 1.2e-37 162.9 202 46.5
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 5.8e-35 154.1 690 24.8
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 2.6e-27 128.6 127 56.7
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 2.2e-26 125.6 447 25.5
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 4.2e-25 121.3 733 22.8
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 9.3e-25 120.2 136 43.4
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 1.3e-15 89.7 124 38.7
Nitab4.5_0005468g0040 Nicotiana tabacum HOM05D001280 ORTHO05D008432 9.3e-09 67.0 104 34.6
Migut.N00333 Erythranthe guttata HOM05D006492 ORTHO05D035178 4.3e-06 58.2 52 63.5
BcaC07g36900 Brassica carinata HOM05D006492 ORTHO05D008432 5.7e-06 57.8 69 43.5


User provided reference genes

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