Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 0.0e+00 1330.9 753 100.0
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 1.2e-181 641.0 820 53.3
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 5.0e-172 609.0 797 51.6
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 3.9e-169 599.4 797 50.8
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 6.7e-169 598.6 812 51.1
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 2.2e-164 583.6 803 50.4
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 6.5e-164 582.0 803 50.4
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 7.2e-163 578.6 797 49.9
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.7e-162 576.6 802 49.9
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 1.9e-155 553.9 812 47.5
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 7.2e-155 552.0 782 49.6
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 5.2e-153 545.8 637 57.5
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.2e-151 540.4 800 50.8
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 4.8e-151 539.3 798 49.0
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 7.0e-150 535.4 823 49.0
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 7.0e-150 535.4 789 48.3
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 5.0e-148 529.3 772 51.0
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 9.4e-147 525.0 787 50.3
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.6e-146 524.2 780 50.5
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 8.0e-146 521.9 791 49.2
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 8.2e-143 511.9 772 49.0
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 2.9e-140 503.4 821 45.7
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 2.5e-139 500.4 786 47.5
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 2.3e-137 493.8 813 46.9
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 3.0e-137 493.4 791 45.4
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 4.4e-136 489.6 805 44.8
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.4e-136 489.6 441 65.1
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.7e-135 487.6 795 45.7
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 1.1e-134 485.0 817 45.9
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 2.4e-134 483.8 808 46.0
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 4.1e-134 483.0 819 44.1
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.9e-133 479.2 801 45.4
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.9e-133 479.2 807 44.9
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 5.9e-133 479.2 801 45.3
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.0e-132 476.1 793 44.6
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 2.5e-131 473.8 767 47.5
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 3.2e-131 473.4 791 44.0
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 4.2e-131 473.0 654 50.8
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.1e-130 470.7 796 45.5
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.7e-130 469.5 792 45.3
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 4.7e-130 469.5 803 45.8
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 1.0e-129 468.4 844 45.5
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 4.0e-129 466.5 786 43.6
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 2.2e-127 460.7 793 44.6
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.8e-127 460.3 790 46.1
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 3.7e-127 459.9 813 44.0
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 1.2e-125 454.9 791 43.1
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.2e-125 454.9 790 45.2
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.6e-125 454.5 842 45.5
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.9e-125 452.6 792 43.7
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 5.9e-125 452.6 819 44.3
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 5.9e-125 452.6 728 45.6
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 2.9e-124 450.3 788 44.0
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.6e-124 449.1 792 45.8
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 6.6e-124 449.1 829 42.3
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 8.6e-124 448.7 795 46.0
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 3.3e-123 446.8 809 43.1
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 7.3e-123 445.7 810 45.2
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.4e-121 441.4 755 43.8
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 4.0e-121 439.9 681 49.8
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 4.0e-121 439.9 794 44.1
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 2.0e-120 437.6 794 44.7
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.8e-120 435.3 791 44.2
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 2.2e-119 434.1 887 41.4
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.9e-119 433.7 805 44.5
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 1.4e-118 431.4 756 45.9
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 7.0e-118 429.1 800 43.4
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 1.3e-116 424.9 816 43.6
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 1.7e-116 424.5 803 44.1
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 2.3e-116 424.1 798 43.4
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 6.6e-116 422.5 391 68.0
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 1.9e-115 421.0 823 42.8
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 3.3e-115 420.2 809 43.8
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 4.7e-114 416.4 860 41.9
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 1.0e-113 415.2 799 42.2
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 5.2e-113 412.9 807 43.6
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 8.9e-113 412.1 819 41.8
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.2e-112 411.8 788 43.5
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 2.2e-111 407.5 788 41.9
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 6.4e-111 406.0 791 41.0
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 5.4e-110 402.9 859 41.9
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 2.0e-109 401.0 834 42.6
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 3.5e-109 400.2 765 41.4
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.3e-108 398.3 991 36.6
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 7.3e-107 392.5 753 42.2
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 1.2e-106 391.7 814 43.5
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 2.8e-106 390.6 787 40.5
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 4.7e-106 389.8 814 39.7
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 2.3e-105 387.5 794 43.5
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 2.2e-103 380.9 602 49.0
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 4.9e-103 379.8 488 53.5
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 3.2e-102 377.1 396 57.6
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 3.2e-102 377.1 834 40.3
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 1.6e-101 374.8 580 49.1
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 2.3e-100 370.9 781 41.6
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 3.0e-100 370.5 838 37.5
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 8.6e-100 369.0 807 40.6
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 1.1e-99 368.6 782 41.3
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 1.9e-99 367.9 815 41.0
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 7.3e-99 365.9 794 41.2
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 1.2e-98 365.2 823 38.5
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 1.4e-97 361.7 620 46.1
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 9.9e-96 355.5 776 40.5
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 6.4e-95 352.8 776 40.6
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 1.9e-94 351.3 781 41.0
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 4.1e-94 350.1 759 40.1
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 5.4e-94 349.7 831 39.4
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 6.0e-93 346.3 770 40.3
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 6.0e-93 346.3 788 40.4
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.0e-92 345.5 807 37.1
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 8.1e-90 335.9 769 40.8
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 1.4e-89 335.1 787 39.8
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 1.4e-89 335.1 825 37.8
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 6.9e-89 332.8 490 50.4
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 9.9e-88 328.9 788 40.1
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 8.4e-87 325.9 759 40.2
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 5.4e-86 323.2 795 39.4
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 7.1e-86 322.8 591 43.8
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 2.7e-85 320.9 814 38.1
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.7e-84 318.2 478 54.0
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.6e-82 311.6 784 37.6
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 8.1e-82 309.3 598 43.1
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 1.1e-81 308.9 298 62.4
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 1.5e-80 305.1 568 43.8
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 2.2e-79 301.2 479 48.6
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 3.8e-79 300.4 472 47.7
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 9.3e-78 295.8 779 38.0
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 9.3e-78 295.8 791 37.5
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 1.6e-77 295.0 472 47.5
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 3.0e-76 290.8 772 37.0
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 3.0e-76 290.8 618 41.1
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 1.1e-75 288.9 824 37.7
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 7.4e-75 286.2 664 39.2
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 9.9e-72 275.8 634 40.2
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 1.8e-60 238.4 567 37.2
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 1.1e-59 235.7 785 33.1
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 2.8e-50 204.5 350 48.3
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 1.3e-47 195.7 175 63.4
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 3.3e-43 181.0 403 37.7
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 1.8e-41 175.3 524 34.5
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 3.1e-41 174.5 419 34.8
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 3.4e-40 171.0 423 34.0
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 2.2e-39 168.3 113 77.9
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 2.7e-37 161.4 392 39.8
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 4.1e-33 147.5 360 37.8
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 1.2e-32 146.0 423 31.4
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 8.5e-31 139.8 100 77.0
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.2e-30 137.9 185 50.8
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.2e-27 129.4 87 78.2
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 1.3e-26 125.9 112 65.2
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 2.2e-23 115.2 463 29.2
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.9e-23 114.8 271 35.4
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 3.8e-23 114.4 407 30.0
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 8.0e-21 106.7 534 29.0
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-18 99.4 68 79.4
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 6.3e-18 97.1 97 57.7
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.0e-17 93.6 59 84.7
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.1e-17 93.2 66 75.8
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 9.1e-17 93.2 55 81.8
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.2e-16 92.8 61 82.0
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.6e-16 92.4 59 84.7
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.6e-16 92.4 61 82.0
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 1.1e-14 86.3 62 71.0
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-14 85.9 56 82.1
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.5e-14 85.1 53 84.9
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.3e-14 84.7 53 84.9
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.2e-14 84.3 53 84.9
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.6e-13 81.3 53 81.1
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.2e-12 77.4 50 80.0
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.5e-11 75.9 160 33.8
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.5e-11 75.9 50 78.0
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 4.4e-11 74.3 57 70.2
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-10 72.0 61 70.5
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 1.8e-09 68.9 47 74.5
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 1.8e-09 68.9 76 53.9
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.8e-07 61.2 39 76.9
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-06 59.7 39 74.4
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 1.9e-06 58.9 37 78.4
Gohir.D12G066350 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.5e-06 58.5 55 63.6
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.3e-06 58.2 39 71.8
Gohir.D01G077750 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.3e-06 57.8 40 72.5
Gohir.D06G084232 Gossypium hirsutum HOM05D003628 ORTHO05D016264 5.6e-06 57.4 37 75.7
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.3e-06 57.0 62 51.6
Cre12.g514550 Chlamydomonas reinhardtii HOM05D003628 ORTHO05D004253 9.5e-06 56.6 95 36.8


User provided reference genes

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