Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 2.7e-115 418.7 216 100.0
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 1.7e-61 240.0 214 59.8
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 4.7e-59 231.9 213 55.9
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 8.9e-58 227.6 212 56.1
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 4.6e-54 215.3 212 53.8
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 7.8e-54 214.5 214 55.1
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.0e-53 214.2 212 55.2
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 1.5e-52 210.3 212 55.7
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 1.5e-52 210.3 213 53.5
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 1.9e-52 209.9 210 53.8
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 7.3e-52 208.0 212 52.4
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 4.7e-51 205.3 227 52.4
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 6.2e-51 204.9 212 53.8
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 1.4e-50 203.8 212 53.8
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 3.1e-50 202.6 210 54.3
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 4.0e-50 202.2 213 53.5
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 6.8e-50 201.4 213 53.5
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 1.2e-49 200.7 212 53.3
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 4.4e-49 198.7 208 51.0
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 5.8e-49 198.4 204 52.9
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 9.9e-49 197.6 210 51.4
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 3.8e-48 195.7 217 53.9
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 3.8e-48 195.7 219 51.6
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 8.4e-48 194.5 219 51.1
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 8.4e-48 194.5 205 52.7
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 1.4e-47 193.7 217 51.6
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 7.1e-47 191.4 212 53.3
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 9.2e-47 191.0 202 52.5
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 2.7e-46 189.5 217 48.4
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 4.6e-46 188.7 212 52.4
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 7.8e-46 188.0 215 48.8
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 1.0e-45 187.6 222 50.0
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.3e-45 186.4 222 50.0
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 5.1e-45 185.3 211 53.6
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 5.1e-45 185.3 222 49.5
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 8.6e-45 184.5 223 50.2
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 8.6e-45 184.5 222 50.0
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 1.1e-44 184.1 214 48.6
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.1e-44 184.1 223 50.2
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 1.5e-44 183.7 217 49.3
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 1.5e-44 183.7 250 46.0
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 1.9e-44 183.3 190 56.3
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 1.9e-44 183.3 212 51.4
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 2.5e-44 183.0 225 48.0
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 2.5e-44 183.0 210 51.0
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 3.3e-44 182.6 214 50.0
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 9.6e-44 181.0 216 48.6
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 1.2e-43 180.6 219 48.9
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 1.6e-43 180.3 205 50.2
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 2.1e-43 179.9 205 49.3
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 6.2e-43 178.3 195 54.4
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 1.4e-42 177.2 194 50.0
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 1.8e-42 176.8 216 46.8
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 2.4e-42 176.4 211 51.7
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 4.0e-42 175.6 214 45.8
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 8.9e-42 174.5 211 46.9
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 2.0e-41 173.3 206 48.5
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 4.4e-41 172.2 239 44.8
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 5.8e-41 171.8 223 45.3
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 7.6e-41 171.4 181 51.4
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 9.9e-41 171.0 216 47.7
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 2.2e-40 169.9 217 45.6
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 2.9e-40 169.5 212 48.6
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 3.8e-40 169.1 215 45.6
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 3.8e-40 169.1 194 51.0
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 8.4e-40 167.9 202 49.0
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 1.1e-39 167.5 181 52.5
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 1.1e-39 167.5 200 49.0
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 1.4e-39 167.2 215 46.5
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 2.4e-39 166.4 185 48.1
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 3.5e-38 162.5 215 47.4
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 6.0e-38 161.8 186 47.3
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 7.8e-38 161.4 230 43.0
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 1.0e-37 161.0 202 45.5
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 1.7e-37 160.2 216 45.8
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 3.9e-37 159.1 211 44.1
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 8.7e-37 157.9 216 45.8
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 2.5e-36 156.4 211 44.5
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 3.3e-36 156.0 184 49.5
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 2.1e-35 153.3 210 43.8
PGSC0003DMG400011585 Solanum tuberosum HOM05D005697 ORTHO05D006951 4.0e-34 149.1 156 50.0
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 6.9e-34 148.3 216 43.5
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 2.0e-33 146.7 204 45.1
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 2.0e-33 146.7 221 41.6
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 7.6e-33 144.8 168 47.0
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 7.6e-33 144.8 212 42.0
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 9.9e-33 144.4 126 60.3
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 1.3e-32 144.1 163 55.2
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 1.7e-32 143.7 177 48.0
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 1.9e-31 140.2 99 68.7
Nitab4.5_0000451g0070 Nicotiana tabacum HOM05D005697 ORTHO05D006951 5.4e-31 138.7 135 54.8
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 7.1e-31 138.3 229 40.6
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 2.1e-30 136.7 210 38.6
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 7.9e-30 134.8 160 48.8
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 7.6e-25 118.2 118 50.8
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.3e-24 117.5 181 43.6
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 6.4e-24 115.2 175 45.7
Nitab4.5_0000867g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.4e-23 114.0 136 46.3
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 3.2e-23 112.8 210 37.6
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 3.5e-22 109.4 209 37.3
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 3.5e-22 109.4 209 37.3
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 4.6e-22 109.0 168 42.3
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 1.3e-21 107.5 209 37.3
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 2.3e-21 106.7 209 36.8
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 3.0e-21 106.3 170 40.6
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 3.9e-21 105.9 207 38.2
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 5.1e-21 105.5 181 44.2
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 5.1e-21 105.5 218 38.1
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 5.6e-20 102.1 184 42.9
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 5.6e-20 102.1 184 42.9
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 5.6e-20 102.1 184 42.9
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 7.4e-20 101.7 184 42.4
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 9.6e-20 101.3 167 40.1
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 9.6e-20 101.3 174 43.1
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 1.3e-19 100.9 219 29.2
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 2.1e-19 100.1 167 41.9
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 2.8e-19 99.8 208 37.5
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 3.7e-19 99.4 183 43.2
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 1.4e-18 97.4 184 42.4
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 1.8e-18 97.1 206 36.4
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 1.5e-17 94.0 185 36.8
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 2.6e-17 93.2 103 48.5
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 7.6e-17 91.7 94 52.1
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 1.7e-16 90.5 220 34.5
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 1.1e-15 87.8 117 47.0
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 3.5e-14 82.8 188 38.3
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 6.0e-14 82.0 182 39.6
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 1.3e-13 80.9 116 44.0
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 1.1e-12 77.8 116 42.2
CDE08G0630 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 7.4e-12 75.1 134 34.3
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 2.1e-11 73.6 140 41.4
ATR0088G022 Amborella trichopoda HOM05D005697 ORTHO05D006951 9.3e-07 58.2 144 31.9


User provided reference genes

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