Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 6.1e-36 153.7 80 100.0
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 6.1e-36 153.7 80 100.0
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 6.1e-36 153.7 80 100.0
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 6.1e-36 153.7 80 100.0
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 6.1e-36 153.7 80 100.0
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 6.1e-36 153.7 80 100.0
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 6.1e-36 153.7 80 100.0
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 6.1e-36 153.7 80 100.0
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 1.6e-33 145.6 80 95.0
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.2e-20 102.8 85 63.5
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 6.7e-19 97.1 87 63.2
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 8.8e-19 96.7 85 60.0
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 2.2e-17 92.0 84 58.3
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 3.7e-17 91.3 81 59.3
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 3.7e-17 91.3 90 54.4
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 4.8e-17 90.9 85 57.6
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 4.8e-17 90.9 87 59.8
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 6.3e-17 90.5 88 54.5
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 6.3e-17 90.5 89 59.6
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 1.4e-16 89.4 81 58.0
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 1.8e-16 89.0 85 54.1
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 3.1e-16 88.2 81 58.0
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 4.1e-16 87.8 81 58.0
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 4.1e-16 87.8 86 58.1
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 1.2e-15 86.3 93 53.8
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 2.0e-15 85.5 93 53.8
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 2.0e-15 85.5 93 53.8
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 2.0e-15 85.5 82 59.8
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 2.6e-15 85.1 82 61.0
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 2.6e-15 85.1 87 57.5
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 4.5e-15 84.3 87 52.9
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 5.9e-15 84.0 88 55.7
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 1.3e-14 82.8 76 55.3
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 2.9e-14 81.6 83 53.0
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 2.9e-14 81.6 89 56.2
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 3.8e-14 81.3 85 57.6
Sopen05g031940 Solanum pennellii HOM05D005842 ORTHO05D007077 5.0e-14 80.9 84 54.8
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 6.5e-14 80.5 83 54.2
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 1.1e-13 79.7 84 52.4
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 1.5e-13 79.3 85 56.5
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 1.5e-13 79.3 85 54.1
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 2.5e-13 78.6 83 53.0
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 5.5e-13 77.4 87 52.9
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 9.4e-13 76.6 88 48.9
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 9.4e-13 76.6 88 48.9
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 1.2e-12 76.3 87 51.7
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 1.6e-12 75.9 94 51.1
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 1.6e-12 75.9 101 49.5
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 4.7e-12 74.3 88 47.7
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 8.0e-12 73.6 87 50.6
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 1.4e-11 72.8 86 53.5
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 1.4e-11 72.8 107 41.1
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 1.8e-11 72.4 86 51.2
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 3.0e-11 71.6 87 54.0
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 5.2e-11 70.9 88 50.0
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 5.2e-11 70.9 88 50.0
Peaxi162Scf01007g00004 Petunia axillaris HOM05D005842 ORTHO05D007077 5.2e-11 70.9 89 47.2
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 5.2e-11 70.9 80 55.0
Sopen09g034020 Solanum pennellii HOM05D005842 ORTHO05D007077 8.8e-11 70.1 87 52.9
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 1.1e-10 69.7 88 48.9
MBI10_g16785_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 1.5e-10 69.3 93 47.3
MBI10_g16786_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 1.5e-10 69.3 93 47.3
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 2.0e-10 68.9 87 51.7
TAR362G0228 Trochodendron aralioides HOM05D005842 ORTHO05D007077 2.0e-10 68.9 75 50.7
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 5.7e-10 67.4 57 61.4
ATR0787G056 Amborella trichopoda HOM05D005842 ORTHO05D007077 7.5e-10 67.0 90 45.6
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 7.5e-10 67.0 107 39.3
C03p53480 Brassica napus HOM05D005842 ORTHO05D007077 9.7e-10 66.6 74 48.6
Medtr1g045980 Medicago truncatula HOM05D005842 ORTHO05D007077 9.7e-10 66.6 126 34.9
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 1.3e-09 66.2 70 51.4
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 2.2e-09 65.5 85 49.4
Rhsim09G0044300 Rhododendron simsii HOM05D005842 ORTHO05D007077 2.8e-09 65.1 87 46.0
Potri.001G172900 Populus trichocarpa HOM05D008630 ORTHO05D010727 3.7e-09 64.7 71 49.3
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 6.3e-09 63.9 75 50.7
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 8.2e-09 63.5 51 62.7
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 1.1e-08 63.2 89 51.7
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 1.1e-08 63.2 107 37.4
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 1.1e-08 63.2 107 37.4
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 1.1e-08 63.2 107 37.4
SalBow2G2733 Salvia bowleyana HOM05D005842 ORTHO05D007077 1.1e-08 63.2 83 44.6
TWI53G0373 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 1.1e-08 63.2 38 81.6
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 1.4e-08 62.8 83 48.2
THA.LOC104810501 Tarenaya hassleriana HOM05D008630 ORTHO05D010727 1.4e-08 62.8 87 49.4
arahy.Tifrunner.gnm1.ann1.GMD4I9 Arachis hypogaea HOM05D005842 ORTHO05D007077 1.8e-08 62.4 88 50.0
HPP92_007288 Vanilla planifolia HOM05D005842 ORTHO05D007077 1.8e-08 62.4 105 40.0
arahy.Tifrunner.gnm1.ann1.JU0LD9 Arachis hypogaea HOM05D005842 ORTHO05D007077 2.4e-08 62.0 89 51.7
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 2.4e-08 62.0 89 50.6
MELO3C023400.2 Cucumis melo HOM05D008630 ORTHO05D010727 2.4e-08 62.0 81 46.9
Sed0009523 Sechium edule HOM05D008630 ORTHO05D010727 2.4e-08 62.0 70 47.1
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 3.1e-08 61.6 76 51.3
TWI18G0017 Tripterygium wilfordii HOM05D008630 ORTHO05D010727 3.1e-08 61.6 78 47.4
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 4.1e-08 61.2 108 38.0
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 4.1e-08 61.2 108 38.0
THA.LOC104818037 Tarenaya hassleriana HOM05D008630 ORTHO05D010727 4.1e-08 61.2 80 48.8
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 7.0e-08 60.5 76 50.0
Peaxi162Scf00125g01021 Petunia axillaris HOM05D005842 ORTHO05D007077 9.1e-08 60.1 86 47.7
Sopen12g032850 Solanum pennellii HOM05D005842 ORTHO05D007077 1.2e-07 59.7 78 44.9
Cfa014832 Carpinus fangiana HOM05D005842 ORTHO05D007077 1.6e-07 59.3 107 39.3
Solyc12g097050.2 Solanum lycopersicum HOM05D005842 ORTHO05D007077 1.6e-07 59.3 78 44.9
CANSAT78G1061 Cannabis sativa HOM05D005842 ORTHO05D007077 2.0e-07 58.9 101 39.6
Thhalv10026478m.g Eutrema salsugineum HOM05D005842 ORTHO05D007077 2.0e-07 58.9 107 35.5
HanXRQChr14g0434231 Helianthus annuus HOM05D005842 ORTHO05D007077 2.0e-07 58.9 84 44.0
PGSC0003DMG400008623 Solanum tuberosum HOM05D005842 ORTHO05D007077 2.0e-07 58.9 78 44.9
Thecc.06G073200 Theobroma cacao HOM05D008630 ORTHO05D010727 2.0e-07 58.9 70 44.3
Dinv38096 Davidia involucrata HOM05D008630 ORTHO05D010727 4.5e-07 57.8 83 42.2
Sed0010218 Sechium edule HOM05D005842 ORTHO05D007077 4.5e-07 57.8 84 39.3
CANSAT78G1849 Cannabis sativa HOM05D005842 ORTHO05D007077 5.9e-07 57.4 107 39.3
Lalb_Chr19g0128561 Lupinus albus HOM05D005842 ORTHO05D007077 7.7e-07 57.0 49 63.3
Cpa.g.sc336.6 Carica papaya HOM05D008630 ORTHO05D010727 1.0e-06 56.6 74 45.9
Lalb_Chr03g0036861 Lupinus albus HOM05D005842 ORTHO05D007077 1.3e-06 56.2 64 53.1
CsaV3_2G012270 Cucumis sativus L. HOM05D005842 ORTHO05D007077 1.7e-06 55.8 94 40.4
BcaC07g37350 Brassica carinata HOM05D005842 ORTHO05D007077 3.8e-06 54.7 107 33.6
A07p08140 Brassica napus HOM05D005842 ORTHO05D007077 3.8e-06 54.7 93 43.0
C07p12280 Brassica napus HOM05D005842 ORTHO05D007077 3.8e-06 54.7 93 43.0
BolC7t41695H Brassica oleracea HOM05D005842 ORTHO05D007077 3.8e-06 54.7 93 43.0
BraA07t28597Z Brassica rapa HOM05D005842 ORTHO05D007077 3.8e-06 54.7 93 43.0
CARHR219200 Cardamine hirsuta HOM05D005842 ORTHO05D007077 3.8e-06 54.7 107 37.4
Sed0006099 Sechium edule HOM05D005842 ORTHO05D007077 3.8e-06 54.7 84 41.7
TPR.G23959 Trifolium pratense HOM05D005842 ORTHO05D007077 3.8e-06 54.7 63 54.0
HPP92_007287 Vanilla planifolia HOM05D005842 ORTHO05D007077 5.0e-06 54.3 103 34.0
AL7G43170 Arabidopsis lyrata HOM05D005842 ORTHO05D007077 8.5e-06 53.5 107 33.6


User provided reference genes

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