Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 6.5e-152 540.8 297 100.0
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 3.2e-50 203.0 245 50.6
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 2.0e-47 193.7 233 50.2
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 4.4e-47 192.6 250 51.6
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.2e-46 190.3 248 47.2
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.4e-45 186.8 300 44.7
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 1.6e-44 184.1 275 41.8
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.3e-43 181.0 251 49.0
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.3e-43 181.0 251 49.0
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 4.2e-42 176.0 225 46.7
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 1.4e-40 171.0 248 46.0
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 2.0e-39 167.2 230 48.3
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 4.4e-39 166.0 238 47.5
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 1.7e-38 164.1 194 50.0
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 2.2e-38 163.7 256 44.9
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 2.8e-38 163.3 255 42.7
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 3.7e-38 162.9 186 49.5
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 4.8e-38 162.5 254 41.7
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 1.1e-37 161.4 227 43.6
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 1.4e-37 161.0 256 41.0
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 1.4e-37 161.0 250 48.0
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 4.1e-37 159.5 250 45.6
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 2.7e-36 156.8 300 41.3
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 5.9e-36 155.6 200 48.5
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 5.9e-36 155.6 250 44.8
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 1.0e-35 154.8 253 45.1
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.7e-35 154.1 302 39.1
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 5.0e-35 152.5 300 40.3
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 5.0e-35 152.5 245 42.4
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 1.1e-34 151.4 271 40.6
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 1.5e-34 151.0 248 43.1
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.9e-34 150.6 230 46.1
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 2.5e-34 150.2 188 46.8
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 9.4e-34 148.3 241 41.1
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 1.2e-33 147.9 207 44.9
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.2e-33 147.9 230 46.5
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 1.6e-33 147.5 271 39.1
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 2.1e-33 147.1 243 40.3
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 4.7e-33 146.0 256 40.2
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 4.7e-33 146.0 231 46.3
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 4.7e-33 146.0 237 44.7
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 8.0e-33 145.2 256 40.2
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 8.0e-33 145.2 258 41.1
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 1.0e-32 144.8 194 47.4
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.0e-32 144.8 281 40.2
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 2.3e-32 143.7 210 44.3
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 5.2e-32 142.5 256 40.6
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.5e-31 141.0 243 39.5
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 3.4e-31 139.8 245 41.2
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.3e-30 137.9 252 38.5
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.7e-30 137.5 193 44.6
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 6.3e-30 135.6 180 48.9
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 3.1e-29 133.3 283 37.8
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 4.1e-29 132.9 300 35.7
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 9.1e-29 131.7 205 42.9
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 3.5e-28 129.8 269 37.9
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 7.7e-28 128.6 298 35.9
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 6.6e-27 125.6 272 39.0
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.1e-26 124.8 245 38.0
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 5.5e-26 122.5 192 43.8
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 2.8e-25 120.2 179 41.3
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 2.8e-25 120.2 191 42.4
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 4.7e-25 119.4 246 36.2
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 6.1e-25 119.0 190 39.5
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 1.0e-24 118.2 180 48.3
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 1.4e-24 117.9 187 42.2
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 1.8e-24 117.5 251 37.1
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 1.2e-23 114.8 187 40.6
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 1.2e-23 114.8 202 39.6
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 1.2e-23 114.8 204 40.7
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 1.5e-23 114.4 183 45.4
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 2.0e-23 114.0 189 40.2
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 2.6e-23 113.6 146 49.3
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 5.7e-23 112.5 146 49.3
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 9.8e-23 111.7 180 40.6
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 4.9e-22 109.4 190 38.9
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 4.9e-22 109.4 178 42.1
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 8.3e-22 108.6 195 40.0
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 1.1e-21 108.2 197 39.1
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 1.8e-21 107.5 194 39.7
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 3.2e-21 106.7 189 40.2
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 2.0e-20 104.0 277 32.5
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 2.7e-20 103.6 176 40.3
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 4.5e-20 102.8 255 36.1
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 5.9e-20 102.4 178 43.3
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.3e-19 101.3 188 39.4
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.3e-19 101.3 188 39.4
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 1.7e-19 100.9 187 38.0
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 2.3e-19 100.5 249 34.5
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 3.9e-19 99.8 155 47.7
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 6.6e-19 99.0 181 39.8
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 6.6e-19 99.0 189 37.6
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 6.6e-19 99.0 176 42.6
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 7.3e-18 95.5 197 33.5
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 9.5e-18 95.1 174 36.2
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 1.2e-17 94.7 186 38.2
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 1.2e-17 94.7 223 33.6
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 1.6e-17 94.4 178 39.3
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 2.1e-17 94.0 116 48.3
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.8e-17 93.6 176 40.3
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 3.6e-17 93.2 199 37.2
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 4.7e-17 92.8 206 37.4
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 1.4e-16 91.3 203 36.9
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 2.3e-16 90.5 211 35.5
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 3.1e-16 90.1 208 33.7
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 3.1e-16 90.1 187 36.9
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 5.2e-16 89.4 215 33.0
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.5e-15 87.8 186 36.0
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 2.0e-15 87.4 150 42.0
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 5.8e-15 85.9 175 37.7
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 7.5e-15 85.5 246 34.1
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 2.2e-14 84.0 279 31.5
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 3.7e-14 83.2 180 37.2
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 3.7e-14 83.2 199 35.7
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 4.9e-14 82.8 166 37.3
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 6.4e-14 82.4 189 32.8
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 1.1e-13 81.6 186 34.9
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 1.9e-13 80.9 186 33.3
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 5.4e-13 79.3 188 31.9
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 7.0e-13 79.0 157 35.7
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 2.3e-11 73.9 145 35.2
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 3.0e-11 73.6 175 35.4
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 3.0e-11 73.6 304 27.6
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 3.0e-11 73.6 185 34.1
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 3.0e-11 73.6 185 34.6
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 3.0e-11 73.6 186 32.8
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 3.9e-11 73.2 184 32.6
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 1.1e-10 71.6 190 32.1
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.5e-10 71.2 180 35.0
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 2.5e-10 70.5 204 32.4
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 2.5e-10 70.5 205 35.1
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 3.3e-10 70.1 189 32.8
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 7.3e-10 68.9 191 31.4
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 9.5e-10 68.6 180 33.3
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 1.2e-09 68.2 180 31.1
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.2e-09 68.2 171 37.4
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 1.6e-09 67.8 179 33.5
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 2.8e-09 67.0 180 31.1
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 2.3e-08 63.9 167 34.1
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 4.0e-08 63.2 183 30.1
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 4.0e-08 63.2 74 51.4
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 4.0e-08 63.2 207 30.0
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 6.8e-08 62.4 181 31.5
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 8.9e-08 62.0 186 33.3
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 8.9e-08 62.0 184 33.7
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 8.9e-08 62.0 184 33.7
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 1.2e-07 61.6 180 35.0
Zm00001eb156930 Zea mays HOM05D004244 ORTHO05D004964 2.0e-07 60.8 127 35.4
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 2.6e-07 60.5 184 33.2
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 9.8e-07 58.5 184 34.2
SalBow1G6706 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.7e-06 57.8 145 31.7
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 6.4e-06 55.8 185 34.1


User provided reference genes

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