Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g06820 Coffea canephora HOM05D001718 ORTHO05D008006 4.3e-128 461.5 251 100.0
Atru.chr4.1874 Acer truncatum HOM05D001718 ORTHO05D008006 8.0e-42 174.9 196 52.6
Nitab4.5_0001998g0070 Nicotiana tabacum HOM05D001718 ORTHO05D008006 4.4e-40 169.1 244 43.4
MSTRG.9844 Avicennia marina HOM05D001718 ORTHO05D008006 7.5e-40 168.3 95 84.2
Migut.G00591 Erythranthe guttata HOM05D001718 ORTHO05D008006 7.5e-40 168.3 90 85.6
Dinv29785 Davidia involucrata HOM05D001718 ORTHO05D008006 1.7e-39 167.2 90 86.7
Nitab4.5_0002738g0040 Nicotiana tabacum HOM05D001718 ORTHO05D008006 1.7e-39 167.2 244 41.8
Hma1.2p1_0112F.1_g054960 Hydrangea macrophylla HOM05D001718 ORTHO05D008006 2.8e-39 166.4 235 44.3
Potri.008G173900 Populus trichocarpa HOM05D001718 ORTHO05D008006 4.8e-39 165.6 89 87.6
QL06p021972 Quercus lobata HOM05D001718 ORTHO05D008006 4.8e-39 165.6 238 45.0
TWI73G1142 Tripterygium wilfordii HOM05D001718 ORTHO05D008006 4.8e-39 165.6 90 86.7
Sabra08G0132700 Salix brachista HOM05D001718 ORTHO05D008006 1.1e-38 164.5 89 86.5
Eucgr.H02885 Eucalyptus grandis HOM05D001718 ORTHO05D008006 1.8e-38 163.7 142 58.5
Cpa.g.sc59.36 Carica papaya HOM05D001718 ORTHO05D008006 3.1e-38 162.9 90 83.3
Cfa014821 Carpinus fangiana HOM05D001718 ORTHO05D008006 4.1e-38 162.5 90 82.2
Cfa014823 Carpinus fangiana HOM05D001718 ORTHO05D008006 4.1e-38 162.5 90 82.2
Thecc.04G268900 Theobroma cacao HOM05D001718 ORTHO05D008006 5.3e-38 162.2 230 45.2
DCAR_002290 Daucus carota HOM05D001718 ORTHO05D008006 7.0e-38 161.8 89 84.3
Nn1g03028 Nelumbo nucifera HOM05D001718 ORTHO05D008006 7.0e-38 161.8 90 82.2
CSS0039982 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 9.1e-38 161.4 90 83.3
CiPaw.01G175400 Carya illinoinensis HOM05D001718 ORTHO05D008006 9.1e-38 161.4 90 82.2
Actinidia35932 Actinidia chinensis HOM05D001718 ORTHO05D008006 1.6e-37 160.6 90 82.2
MBI07_g19048_MAGBIO Magnolia biondii HOM05D001718 ORTHO05D008006 2.0e-37 160.2 90 82.2
GSVIVG01001855001 Vitis vinifera HOM05D001718 ORTHO05D008006 2.0e-37 160.2 90 81.1
CAN.G566.5 Capsicum annuum HOM05D001718 ORTHO05D008006 2.7e-37 159.8 229 41.9
FAN17G2486 Fragaria x ananassa HOM05D001718 ORTHO05D008006 2.7e-37 159.8 232 42.7
PGR004G0708 Punica granatum HOM05D001718 ORTHO05D008006 2.7e-37 159.8 90 80.0
SGA_v2.0_scaffold142G35679 Striga asiatica HOM05D001718 ORTHO05D008006 2.7e-37 159.8 95 80.0
Gohir.A09G230100 Gossypium hirsutum HOM05D001718 ORTHO05D008006 4.5e-37 159.1 211 46.9
HanXRQChr01g0022541 Helianthus annuus HOM05D001718 ORTHO05D008006 4.5e-37 159.1 89 80.9
RcHm_v2.0_Chr4g0396091 Rosa chinensis HOM05D001718 ORTHO05D008006 4.5e-37 159.1 232 42.7
TAR362G0436 Trochodendron aralioides HOM05D001718 ORTHO05D008006 4.5e-37 159.1 90 82.2
ECA248G0176 Erigeron canadensis HOM05D001718 ORTHO05D008006 5.9e-37 158.7 89 82.0
COL.COLO4_16000 Corchorus olitorius HOM05D001718 ORTHO05D008006 7.7e-37 158.3 90 82.2
CSS0019444 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 1.0e-36 157.9 89 84.3
Actinidia37386 Actinidia chinensis HOM05D001718 ORTHO05D008006 1.3e-36 157.5 94 76.6
FvH4_4g05180 Fragaria vesca HOM05D001718 ORTHO05D008006 1.3e-36 157.5 228 42.1
Manes.03G156100 Manihot esculenta HOM05D001718 ORTHO05D008006 1.3e-36 157.5 148 55.4
ATR0723G067 Amborella trichopoda HOM05D001718 ORTHO05D008006 1.7e-36 157.1 89 80.9
CSS0046227 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 1.7e-36 157.1 242 41.7
CDE05G2223 Ceratophyllum demersum HOM05D001718 ORTHO05D008006 2.2e-36 156.8 90 80.0
ClCG06G007500 Citrullus lanatus HOM05D001718 ORTHO05D008006 2.2e-36 156.8 90 77.8
FAN12G0595 Fragaria x ananassa HOM05D001718 ORTHO05D008006 2.2e-36 156.8 228 42.1
Gohir.D09G231200 Gossypium hirsutum HOM05D001718 ORTHO05D008006 2.2e-36 156.8 211 46.4
Peaxi162Scf01007g00115 Petunia axillaris HOM05D001718 ORTHO05D008006 2.2e-36 156.8 88 81.8
Duzib151G0805 Durio zibethinus HOM05D001718 ORTHO05D008006 2.9e-36 156.4 90 80.0
PGSC0003DMG400008622 Solanum tuberosum HOM05D001718 ORTHO05D008006 3.8e-36 156.0 89 80.9
Prupe.1G052500 Prunus persica HOM05D001718 ORTHO05D008006 5.0e-36 155.6 90 78.9
Sc13g0003030 Simmondsia chinensis HOM05D001718 ORTHO05D008006 6.5e-36 155.2 90 80.0
Solyc12g097030.2 Solanum lycopersicum HOM05D001718 ORTHO05D008006 6.5e-36 155.2 89 79.8
Sopen12g032840 Solanum pennellii HOM05D001718 ORTHO05D008006 6.5e-36 155.2 89 79.8
unitig_744.g24611 Utricularia gibba HOM05D001718 ORTHO05D008006 6.5e-36 155.2 88 78.4
SalBow2G0821 Salvia bowleyana HOM05D001718 ORTHO05D008006 8.5e-36 154.8 97 76.3
HPP92_022078 Vanilla planifolia HOM05D001718 ORTHO05D008006 8.5e-36 154.8 90 78.9
CARHR224460 Cardamine hirsuta HOM05D001718 ORTHO05D008006 1.1e-35 154.5 90 78.9
Aa31LG6G490 Aethionema arabicum HOM05D001718 ORTHO05D008006 1.5e-35 154.1 90 76.7
Gorai.006G253900 Gossypium raimondii HOM05D001718 ORTHO05D008006 1.9e-35 153.7 88 80.7
Aqoxy5G00099 Aquilegia oxysepala HOM05D001718 ORTHO05D008006 2.5e-35 153.3 90 78.9
Carub.0007s2362 Capsella rubella HOM05D001718 ORTHO05D008006 2.5e-35 153.3 90 76.7
CsaV3_2G012180 Cucumis sativus L. HOM05D001718 ORTHO05D008006 2.5e-35 153.3 90 76.7
Psat6g138640 Pisum sativum HOM05D001718 ORTHO05D008006 2.5e-35 153.3 84 82.1
Sp7g16370 Schrenkiella parvula HOM05D001718 ORTHO05D008006 2.5e-35 153.3 90 77.8
Ciclev10004718m.g Citrus clementina HOM05D001718 ORTHO05D008006 3.2e-35 152.9 86 83.7
Hund24866 Selenicereus undatus HOM05D001718 ORTHO05D008006 3.2e-35 152.9 90 77.8
EL10Ac3g06717 Beta vulgaris HOM05D001718 ORTHO05D008006 4.2e-35 152.5 149 56.4
CSS0018370 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 4.2e-35 152.5 89 82.0
CANSAT78G1590 Cannabis sativa HOM05D001718 ORTHO05D008006 5.5e-35 152.1 233 43.8
BcaC06g33587 Brassica carinata HOM05D001718 ORTHO05D008006 7.2e-35 151.8 90 76.7
BcaNung04036 Brassica carinata HOM05D001718 ORTHO05D008006 7.2e-35 151.8 90 76.7
BolC7t45413H Brassica oleracea HOM05D001718 ORTHO05D008006 7.2e-35 151.8 90 76.7
MELO3C023073.2 Cucumis melo HOM05D001718 ORTHO05D008006 7.2e-35 151.8 79 86.1
Glyma.20G199000 Glycine max HOM05D001718 ORTHO05D008006 7.2e-35 151.8 84 81.0
Lj6A639G39 Lonicera japonica HOM05D001718 ORTHO05D008006 7.2e-35 151.8 78 91.0
AL7G36830 Arabidopsis lyrata HOM05D001718 ORTHO05D008006 2.1e-34 150.2 81 84.0
AagrBONN_evm.TU.Sc2ySwM_117.3304 Anthoceros agrestis HOM05D001718 ORTHO05D008006 2.7e-34 149.8 87 78.2
CSS0026405 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 2.7e-34 149.8 88 81.8
Os02g0815700 Oryza sativa ssp. japonica HOM05D001718 ORTHO05D008006 2.7e-34 149.8 98 76.5
Sed0022047 Sechium edule HOM05D001718 ORTHO05D008006 3.6e-34 149.4 90 75.6
AT4G17740 Arabidopsis thaliana HOM05D001718 ORTHO05D008006 4.7e-34 149.1 81 82.7
A03p50680 Brassica napus HOM05D001718 ORTHO05D008006 4.7e-34 149.1 82 82.9
C07p49070 Brassica napus HOM05D001718 ORTHO05D008006 4.7e-34 149.1 82 82.9
BraA03t14160Z Brassica rapa HOM05D001718 ORTHO05D008006 4.7e-34 149.1 82 82.9
Medtr1g073130 Medicago truncatula HOM05D001718 ORTHO05D008006 4.7e-34 149.1 84 79.8
PSO170G6300 Papaver somniferum HOM05D001718 ORTHO05D008006 6.1e-34 148.7 90 77.8
PSO674G0056 Papaver somniferum HOM05D001718 ORTHO05D008006 6.1e-34 148.7 90 77.8
Phvul.L001972 Phaseolus vulgaris HOM05D001718 ORTHO05D008006 6.1e-34 148.7 84 79.8
Ca_09793_v3 Cicer arietinum L. HOM05D001718 ORTHO05D008006 8.0e-34 148.3 84 79.8
MD13G1225700 Malus domestica HOM05D001718 ORTHO05D008006 1.0e-33 147.9 88 76.1
MD16G1230600 Malus domestica HOM05D001718 ORTHO05D008006 1.4e-33 147.5 88 77.3
VMungo0720G0699 Vigna mungo HOM05D001718 ORTHO05D008006 1.4e-33 147.5 84 78.6
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.8e-33 147.1 78 88.5
SMO201G0124 Selaginella moellendorffii HOM05D001718 ORTHO05D008006 2.3e-33 146.7 76 89.5
PSO170G2849 Papaver somniferum HOM05D001718 ORTHO05D008006 3.0e-33 146.4 90 76.7
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 4.0e-33 146.0 78 87.2
Lsat_1_v5_gn_1_76140 Lactuca sativa HOM05D001718 ORTHO05D008006 4.0e-33 146.0 89 77.5
arahy.Tifrunner.gnm1.ann1.45LQ32 Arachis hypogaea HOM05D001718 ORTHO05D008006 5.2e-33 145.6 84 77.4
arahy.Tifrunner.gnm1.ann1.E27NQH Arachis hypogaea HOM05D001718 ORTHO05D008006 5.2e-33 145.6 84 77.4
Haze_11496 Corylus avellana HOM05D001718 ORTHO05D008006 5.2e-33 145.6 115 63.5
Pp3c9_5260 Physcomitrium patens HOM05D001718 ORTHO05D008006 5.2e-33 145.6 90 74.4
vmacro00532 Vaccinium macrocarpon HOM05D001718 ORTHO05D008006 6.8e-33 145.2 102 70.6
Thhalv10024882m.g Eutrema salsugineum HOM05D001718 ORTHO05D008006 8.8e-33 144.8 77 87.0
Lj5g0016567 Lotus japonicus HOM05D001718 ORTHO05D008006 8.8e-33 144.8 84 79.8
TPR.G18554 Trifolium pratense HOM05D001718 ORTHO05D008006 8.8e-33 144.8 84 78.6
Mapoly0016s0103 Marchantia polymorpha HOM05D001718 ORTHO05D008006 1.5e-32 144.1 87 75.9
Zm00001eb258790 Zea mays HOM05D001718 ORTHO05D008006 1.5e-32 144.1 78 84.6
Lalb_Chr06g0169581 Lupinus albus HOM05D001718 ORTHO05D008006 2.6e-32 143.3 84 76.2
THA.LOC104826103 Tarenaya hassleriana HOM05D001718 ORTHO05D008006 5.7e-32 142.1 75 85.3
CBR_g4874 Chara braunii HOM05D001718 ORTHO05D008006 8.5e-28 128.3 84 67.9
Cre10.g420550 Chlamydomonas reinhardtii HOM05D001718 ORTHO05D008006 2.8e-23 113.2 77 66.2
Sopen00g008730 Solanum pennellii HOM05D001718 ORTHO05D008006 1.1e-22 111.3 215 36.3
Rhsim09G0043700 Rhododendron simsii HOM05D001718 ORTHO05D008006 1.4e-22 110.9 61 83.6
MCO05G268 Micromonas commoda HOM05D001718 ORTHO05D008006 2.4e-22 110.2 79 60.8
CDE11G0512 Ceratophyllum demersum HOM05D001718 ORTHO05D008006 4.1e-22 109.4 78 65.4
PRCOL_00002285 Prasinoderma coloniale HOM05D001718 ORTHO05D008006 7.7e-21 105.1 76 63.2
PRCOL_00004096 Prasinoderma coloniale HOM05D001718 ORTHO05D009127 2.2e-07 60.5 69 39.1
Glyma.10G191333 Glycine max HOM05D001718 ORTHO05D008006 2.9e-07 60.1 36 72.2
Phvul.007G255600 Phaseolus vulgaris HOM05D001718 ORTHO05D007949 4.9e-07 59.3 90 32.2
VMungo0720G1950 Vigna mungo HOM05D001718 ORTHO05D007949 4.9e-07 59.3 90 32.2
Duzib093G0858 Durio zibethinus HOM05D001718 ORTHO05D007949 8.3e-07 58.5 90 31.1
Pp3c16_16750 Physcomitrium patens HOM05D001718 ORTHO05D009127 8.3e-07 58.5 69 39.1
Sp5g04950 Schrenkiella parvula HOM05D001718 ORTHO05D007949 8.3e-07 58.5 90 32.2
arahy.Tifrunner.gnm1.ann1.5NB5PV Arachis hypogaea HOM05D001718 ORTHO05D007949 1.1e-06 58.2 90 31.1
arahy.Tifrunner.gnm1.ann1.Q9AIC8 Arachis hypogaea HOM05D001718 ORTHO05D007949 1.1e-06 58.2 90 31.1
CSS0042564 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D007949 1.1e-06 58.2 90 32.2
Solyc03g059260.4 Solanum lycopersicum HOM05D001718 ORTHO05D007949 1.1e-06 58.2 90 30.0
Sopen03g013610 Solanum pennellii HOM05D001718 ORTHO05D007949 1.1e-06 58.2 90 30.0
PGSC0003DMG400033928 Solanum tuberosum HOM05D001718 ORTHO05D007949 1.1e-06 58.2 90 30.0
AT3G57680 Arabidopsis thaliana HOM05D001718 ORTHO05D007949 1.4e-06 57.8 69 34.8
COL.COLO4_28683 Corchorus olitorius HOM05D001718 ORTHO05D007949 1.4e-06 57.8 90 31.1
Gohir.A01G196000 Gossypium hirsutum HOM05D001718 ORTHO05D007949 1.4e-06 57.8 90 31.1
Gohir.D01G186400 Gossypium hirsutum HOM05D001718 ORTHO05D007949 1.4e-06 57.8 90 31.1
Gorai.002G229800 Gossypium raimondii HOM05D001718 ORTHO05D007949 1.4e-06 57.8 90 31.1
Nitab4.5_0000452g0010 Nicotiana tabacum HOM05D001718 ORTHO05D007949 1.4e-06 57.8 90 30.0
Nitab4.5_0002861g0040 Nicotiana tabacum HOM05D001718 ORTHO05D007949 1.4e-06 57.8 90 30.0
Thecc.05G163200 Theobroma cacao HOM05D001718 ORTHO05D007949 1.4e-06 57.8 69 36.2
DCAR_013578 Daucus carota HOM05D001718 ORTHO05D007949 1.9e-06 57.4 90 30.0
Glyma.10G094900 Glycine max HOM05D001718 ORTHO05D007949 1.9e-06 57.4 90 30.0
Lsat_1_v5_gn_8_80041 Lactuca sativa HOM05D001718 ORTHO05D007949 1.9e-06 57.4 69 34.8
Pp3c12_26230 Physcomitrium patens HOM05D001718 ORTHO05D007949 1.9e-06 57.4 69 40.6
BcaC07g40353 Brassica carinata HOM05D001718 ORTHO05D007949 2.4e-06 57.0 90 30.0
A09p50530 Brassica napus HOM05D001718 ORTHO05D007949 2.4e-06 57.0 90 30.0
C08p33260 Brassica napus HOM05D001718 ORTHO05D007949 2.4e-06 57.0 90 30.0
BolC8t50928H Brassica oleracea HOM05D001718 ORTHO05D007949 2.4e-06 57.0 90 30.0
BraA09t40507Z Brassica rapa HOM05D001718 ORTHO05D007949 2.4e-06 57.0 90 30.0
CAN.G115.8 Capsicum annuum HOM05D001718 ORTHO05D007949 2.4e-06 57.0 90 30.0
Duzib106G1478 Durio zibethinus HOM05D001718 ORTHO05D007949 2.4e-06 57.0 69 36.2
Thhalv10005897m.g Eutrema salsugineum HOM05D001718 ORTHO05D007949 2.4e-06 57.0 69 36.2
Lj5g0011485 Lotus japonicus HOM05D001718 ORTHO05D007949 2.4e-06 57.0 90 30.0
Mapoly0051s0032 Marchantia polymorpha HOM05D001718 ORTHO05D009127 2.4e-06 57.0 69 36.2
Medtr1g052135 Medicago truncatula HOM05D001718 ORTHO05D007949 2.4e-06 57.0 90 31.1
Potri.006G055400 Populus trichocarpa HOM05D001718 ORTHO05D007949 2.4e-06 57.0 90 31.1
Sed0001386 Sechium edule HOM05D001718 ORTHO05D007949 2.4e-06 57.0 90 30.0
SMO200G0188 Selaginella moellendorffii HOM05D001718 ORTHO05D007949 2.4e-06 57.0 69 36.2
SGA_v2.0_scaffold105G30454 Striga asiatica HOM05D001718 ORTHO05D007949 2.4e-06 57.0 69 36.2
TPR.G22782 Trifolium pratense HOM05D001718 ORTHO05D007949 2.4e-06 57.0 90 31.1
Carub.0005s2451 Capsella rubella HOM05D001718 ORTHO05D007949 3.2e-06 56.6 84 31.0
ClCG04G000670 Citrullus lanatus HOM05D001718 ORTHO05D007949 3.2e-06 56.6 90 30.0
MELO3C009027.2 Cucumis melo HOM05D001718 ORTHO05D007949 3.2e-06 56.6 90 30.0
Mapoly0039s0084 Marchantia polymorpha HOM05D001718 ORTHO05D007949 3.2e-06 56.6 69 37.7
Psat6g123600 Pisum sativum HOM05D001718 ORTHO05D007949 3.2e-06 56.6 90 31.1
THA.LOC104819007 Tarenaya hassleriana HOM05D001718 ORTHO05D007949 3.2e-06 56.6 69 36.2
Atru.chr1.1027 Acer truncatum HOM05D001718 ORTHO05D007949 4.1e-06 56.2 90 31.1
Cpa.g.sc85.132 Carica papaya HOM05D001718 ORTHO05D007949 4.1e-06 56.2 69 34.8
Ca_10140_v3 Cicer arietinum L. HOM05D001718 ORTHO05D007949 4.1e-06 56.2 90 31.1
Lsat_1_v5_gn_2_4801 Lactuca sativa HOM05D001718 ORTHO05D007949 4.1e-06 56.2 69 31.9
Os06g0318600 Oryza sativa ssp. japonica HOM05D001718 ORTHO05D007949 4.1e-06 56.2 90 30.0
TWI74G0848 Tripterygium wilfordii HOM05D001718 ORTHO05D007949 4.1e-06 56.2 69 36.2
Actinidia09361 Actinidia chinensis HOM05D001718 ORTHO05D007949 5.4e-06 55.8 155 23.9
AL5G39300 Arabidopsis lyrata HOM05D001718 ORTHO05D007949 5.4e-06 55.8 84 29.8
BcaC07g40148 Brassica carinata HOM05D001718 ORTHO05D007949 5.4e-06 55.8 69 34.8
Dinv24121 Davidia involucrata HOM05D001718 ORTHO05D007949 5.4e-06 55.8 69 33.3
Migut.J01789 Erythranthe guttata HOM05D001718 ORTHO05D007949 5.4e-06 55.8 69 34.8
HanXRQChr05g0132201 Helianthus annuus HOM05D001718 ORTHO05D007949 5.4e-06 55.8 69 34.8
Manes.09G029500 Manihot esculenta HOM05D001718 ORTHO05D007949 5.4e-06 55.8 69 34.8
SEGI_21132 Sequoiadendron giganteum HOM05D001718 ORTHO05D009127 5.4e-06 55.8 69 37.7
GSVIVG01033332001 Vitis vinifera HOM05D001718 ORTHO05D007949 5.4e-06 55.8 69 34.8
MSTRG.6454 Avicennia marina HOM05D001718 ORTHO05D007949 7.0e-06 55.5 69 31.9
CARHR167880 Cardamine hirsuta HOM05D001718 ORTHO05D007949 7.0e-06 55.5 69 34.8
AUR62024389 Chenopodium quinoa HOM05D001718 ORTHO05D007949 7.0e-06 55.5 90 28.9
FvH4_6g23140 Fragaria vesca HOM05D001718 ORTHO05D007949 9.2e-06 55.1 94 28.7
FAN14G2301 Fragaria x ananassa HOM05D001718 ORTHO05D007949 9.2e-06 55.1 94 28.7
Sabra06G0039300 Salix brachista HOM05D001718 ORTHO05D007949 9.2e-06 55.1 69 34.8
SEGI_38104 Sequoiadendron giganteum HOM05D001718 ORTHO05D007949 9.2e-06 55.1 69 31.9


User provided reference genes

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