Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g06750 Coffea canephora HOM05D006155 ORTHO05D007529 9.5e-153 543.5 280 100.0
Dinv27131 Davidia involucrata HOM05D006155 ORTHO05D007529 8.2e-104 380.9 249 75.9
CSS0040589 Camellia sinensis var. sinensis HOM05D006155 ORTHO05D007529 1.4e-103 380.2 249 75.1
Lsat_1_v5_gn_1_76101 Lactuca sativa HOM05D006155 ORTHO05D007529 9.0e-103 377.5 247 72.9
SGA_v2.0_scaffold285G47059 Striga asiatica HOM05D006155 ORTHO05D007529 4.5e-102 375.2 231 75.3
Rhsim09G0042400 Rhododendron simsii HOM05D006155 ORTHO05D007529 3.8e-101 372.1 248 74.2
Actinidia35935 Actinidia chinensis HOM05D006155 ORTHO05D007529 4.9e-101 371.7 217 79.7
Oeu055271.1 Olea europaea HOM05D006155 ORTHO05D007529 4.9e-101 371.7 234 76.5
Actinidia32965 Actinidia chinensis HOM05D006155 ORTHO05D007529 6.5e-101 371.3 231 76.6
Prupe.1G052300 Prunus persica HOM05D006155 ORTHO05D007529 3.2e-100 369.0 237 73.0
arahy.Tifrunner.gnm1.ann1.NLE1X5 Arachis hypogaea HOM05D006155 ORTHO05D007529 5.5e-100 368.2 254 70.5
Lj6C638T14 Lonicera japonica HOM05D006155 ORTHO05D007529 5.5e-100 368.2 226 76.1
Solyc09g090750.3 Solanum lycopersicum HOM05D006155 ORTHO05D007529 9.3e-100 367.5 231 74.9
arahy.Tifrunner.gnm1.ann1.L647M7 Arachis hypogaea HOM05D006155 ORTHO05D007529 1.2e-99 367.1 254 70.1
MSTRG.24647 Avicennia marina HOM05D006155 ORTHO05D007529 1.2e-99 367.1 244 73.4
CANSAT78G1287 Cannabis sativa HOM05D006155 ORTHO05D007529 1.6e-99 366.7 244 71.3
Sopen09g033690 Solanum pennellii HOM05D006155 ORTHO05D007529 1.6e-99 366.7 221 76.9
Hma1.2p1_0042F.1_g025650 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 2.1e-99 366.3 233 73.8
Lju2262C0T14 Lonicera japonica HOM05D006155 ORTHO05D007529 2.1e-99 366.3 226 75.7
PGSC0003DMG400001560 Solanum tuberosum HOM05D006155 ORTHO05D007529 6.1e-99 364.8 218 77.1
HanXRQChr01g0022501 Helianthus annuus HOM05D006155 ORTHO05D007529 7.9e-99 364.4 234 73.9
Migut.N00320 Erythranthe guttata HOM05D006155 ORTHO05D007529 1.8e-98 363.2 216 78.2
CAN.G812.29 Capsicum annuum HOM05D006155 ORTHO05D007529 3.0e-98 362.5 240 70.4
Haze_11491 Corylus avellana HOM05D006155 ORTHO05D007529 3.0e-98 362.5 235 73.2
RcHm_v2.0_Chr4g0396071 Rosa chinensis HOM05D006155 ORTHO05D007529 3.0e-98 362.5 236 71.2
SalBow3G4628 Salvia bowleyana HOM05D006155 ORTHO05D007529 3.9e-98 362.1 231 73.2
Oeu023143.1 Olea europaea HOM05D006155 ORTHO05D007529 1.1e-97 360.5 223 75.3
Nitab4.5_0003474g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 2.5e-97 359.4 232 73.3
EL10Ac3g06713 Beta vulgaris HOM05D006155 ORTHO05D007529 3.3e-97 359.0 242 70.2
MD16G1230400 Malus domestica HOM05D006155 ORTHO05D007529 3.3e-97 359.0 229 71.6
DCAR_002295 Daucus carota HOM05D006155 ORTHO05D007529 4.3e-97 358.6 236 73.7
Ah.13g074940 Amaranthus hybridus HOM05D006155 ORTHO05D007529 5.7e-97 358.2 238 70.2
Nitab4.5_0002937g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 5.7e-97 358.2 235 72.3
PGR004G1196 Punica granatum HOM05D006155 ORTHO05D007529 1.6e-96 356.7 247 68.8
Lalb_Chr02g0150741 Lupinus albus HOM05D006155 ORTHO05D007529 2.2e-96 356.3 232 72.0
Cfa014810 Carpinus fangiana HOM05D006155 ORTHO05D007529 2.8e-96 355.9 235 71.9
FvH4_4g05140 Fragaria vesca HOM05D006155 ORTHO05D007529 3.7e-96 355.5 246 68.3
FAN12G3888 Fragaria x ananassa HOM05D006155 ORTHO05D007529 1.1e-95 354.0 246 67.9
Sabra10G0043200 Salix brachista HOM05D006155 ORTHO05D007529 1.4e-95 353.6 239 70.3
Aqoxy2G03758 Aquilegia oxysepala HOM05D006155 ORTHO05D007529 1.8e-95 353.2 217 76.5
COL.COLO4_15996 Corchorus olitorius HOM05D006155 ORTHO05D007529 5.3e-95 351.7 222 74.3
Eucgr.H02890 Eucalyptus grandis HOM05D006155 ORTHO05D007529 9.0e-95 350.9 241 68.0
Glyma.20G199100 Glycine max HOM05D006155 ORTHO05D007529 9.0e-95 350.9 218 73.9
Atru.chr4.1882 Acer truncatum HOM05D006155 ORTHO05D007529 2.0e-94 349.7 232 72.0
GSVIVG01027954001 Vitis vinifera HOM05D006155 ORTHO05D007529 2.0e-94 349.7 233 71.7
Ciclev10005577m.g Citrus clementina HOM05D006155 ORTHO05D007529 3.4e-94 349.0 239 69.0
Medtr1g073140 Medicago truncatula HOM05D006155 ORTHO05D007529 7.7e-94 347.8 229 69.9
Glyma.10G191200 Glycine max HOM05D006155 ORTHO05D007529 1.7e-93 346.7 218 72.5
Peaxi162Scf00125g01318 Petunia axillaris HOM05D006155 ORTHO05D007529 2.2e-93 346.3 236 70.8
PSO063G0276 Papaver somniferum HOM05D006155 ORTHO05D007529 6.5e-93 344.7 238 70.2
VMungo0720G0761 Vigna mungo HOM05D006155 ORTHO05D007529 8.5e-93 344.4 230 70.0
Gorai.011G180400 Gossypium raimondii HOM05D006155 ORTHO05D007529 1.1e-92 344.0 226 70.4
Manes.15G047200 Manihot esculenta HOM05D006155 ORTHO05D007529 1.1e-92 344.0 229 70.3
Phvul.L001872 Phaseolus vulgaris HOM05D006155 ORTHO05D007529 1.1e-92 344.0 216 73.6
Potri.010G063700 Populus trichocarpa HOM05D006155 ORTHO05D007529 1.9e-92 343.2 239 68.2
Gohir.D10G160700 Gossypium hirsutum HOM05D006155 ORTHO05D007529 2.5e-92 342.8 226 69.9
TPR.G18563 Trifolium pratense HOM05D006155 ORTHO05D007529 7.2e-92 341.3 226 69.9
TWI09G0038 Tripterygium wilfordii HOM05D006155 ORTHO05D007529 1.6e-91 340.1 239 68.2
Gohir.A10G106500 Gossypium hirsutum HOM05D006155 ORTHO05D007529 2.7e-91 339.3 226 69.0
Thecc.04G268500 Theobroma cacao HOM05D006155 ORTHO05D007529 2.7e-91 339.3 245 65.7
FAN22G1742 Fragaria x ananassa HOM05D006155 ORTHO05D007529 3.6e-91 339.0 253 64.8
ECA248G1656 Erigeron canadensis HOM05D006155 ORTHO05D007529 4.6e-91 338.6 195 79.0
FAN17G0987 Fragaria x ananassa HOM05D006155 ORTHO05D007529 6.1e-91 338.2 257 65.0
Hund20478 Selenicereus undatus HOM05D006155 ORTHO05D007529 6.1e-91 338.2 216 73.6
Duzib151G0563 Durio zibethinus HOM05D006155 ORTHO05D007529 7.9e-91 337.8 231 68.0
Aa31LG5G4150 Aethionema arabicum HOM05D006155 ORTHO05D007529 1.0e-90 337.4 247 65.6
THA.LOC104816010 Tarenaya hassleriana HOM05D006155 ORTHO05D007529 1.8e-90 336.7 239 66.1
vmacro00537 Vaccinium macrocarpon HOM05D006155 ORTHO05D007529 5.1e-90 335.1 324 54.0
Carub.0004s1472 Capsella rubella HOM05D006155 ORTHO05D007529 8.8e-90 334.3 219 69.4
Nn3g19816 Nelumbo nucifera HOM05D006155 ORTHO05D007529 1.1e-89 334.0 198 78.8
C03p21810 Brassica napus HOM05D006155 ORTHO05D007529 2.5e-89 332.8 247 63.6
Lj5g0009281 Lotus japonicus HOM05D006155 ORTHO05D007529 2.5e-89 332.8 241 65.1
BolC3t14563H Brassica oleracea HOM05D006155 ORTHO05D007529 3.3e-89 332.4 247 63.6
AT2G33255 Arabidopsis thaliana HOM05D006155 ORTHO05D007529 4.3e-89 332.0 235 66.0
AL4G28890 Arabidopsis lyrata HOM05D006155 ORTHO05D007529 5.7e-89 331.6 221 68.3
Ca_09794_v3 Cicer arietinum L. HOM05D006155 ORTHO05D007529 5.7e-89 331.6 240 65.0
ClCG05G003860 Citrullus lanatus HOM05D006155 ORTHO05D007529 7.4e-89 331.3 239 65.3
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 1.3e-88 330.5 247 63.6
Thhalv10017161m.g Eutrema salsugineum HOM05D006155 ORTHO05D007529 1.7e-88 330.1 235 64.7
CsaV3_3G011540 Cucumis sativus L. HOM05D006155 ORTHO05D007529 2.2e-88 329.7 239 65.7
CDE02G2305 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 4.8e-88 328.6 234 66.7
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 6.3e-88 328.2 251 62.9
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 6.3e-88 328.2 252 63.1
Sp4g15560 Schrenkiella parvula HOM05D006155 ORTHO05D007529 8.2e-88 327.8 235 65.1
BcaC02g07849 Brassica carinata HOM05D006155 ORTHO05D007529 1.1e-87 327.4 251 62.2
BcaC01g05849 Brassica carinata HOM05D006155 ORTHO05D007529 1.4e-87 327.0 221 67.0
BcaC02g07846 Brassica carinata HOM05D006155 ORTHO05D007529 1.4e-87 327.0 221 67.0
MELO3C006364.2 Cucumis melo HOM05D006155 ORTHO05D007529 1.8e-87 326.6 239 64.9
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 3.1e-87 325.9 230 65.2
A03p18670 Brassica napus HOM05D006155 ORTHO05D007529 5.3e-87 325.1 247 62.8
unitig_899.g15552 Utricularia gibba HOM05D006155 ORTHO05D007529 5.3e-87 325.1 300 58.3
CARHR127260 Cardamine hirsuta HOM05D006155 ORTHO05D007529 6.9e-87 324.7 235 65.5
BraA03t11126Z Brassica rapa HOM05D006155 ORTHO05D007529 9.1e-87 324.3 247 62.3
Duzib212G0768 Durio zibethinus HOM05D006155 ORTHO05D007529 1.0e-85 320.9 231 63.6
Sed0003799 Sechium edule HOM05D006155 ORTHO05D007529 5.0e-85 318.5 244 61.5
Sed0011773 Sechium edule HOM05D006155 ORTHO05D007529 1.2e-83 313.9 229 63.3
Os02g0816100 Oryza sativa ssp. japonica HOM05D006155 ORTHO05D007529 4.7e-83 312.0 244 61.9
HPP92_007421 Vanilla planifolia HOM05D006155 ORTHO05D007529 1.9e-76 290.0 200 68.0
ATR0787G199 Amborella trichopoda HOM05D006155 ORTHO05D007529 7.2e-76 288.1 205 66.8
MBI07_g08907_MAGBIO Magnolia biondii HOM05D006155 ORTHO05D007529 1.2e-75 287.3 180 77.8
Cpa.g.sc3.348 Carica papaya HOM05D006155 ORTHO05D007529 1.0e-74 284.3 180 75.0
Sc04g0004680 Simmondsia chinensis HOM05D006155 ORTHO05D007529 5.2e-74 282.0 164 79.3
SMO165G0032 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 1.6e-70 270.4 218 59.2
CDE01G0085 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 2.9e-69 266.2 234 56.8
Pp3c17_6550 Physcomitrium patens HOM05D006155 ORTHO05D007529 6.1e-67 258.5 221 57.5
Pp3c2_6750 Physcomitrium patens HOM05D006155 ORTHO05D007529 6.5e-61 238.4 217 52.5
TAR365G0649 Trochodendron aralioides HOM05D006155 ORTHO05D007529 1.6e-54 217.2 141 70.2
LjContig00022g0011299 Lotus japonicus HOM05D006155 ORTHO05D007529 4.0e-50 202.6 177 58.2
CiPaw.01G175800 Carya illinoinensis HOM05D006155 ORTHO05D007529 6.6e-45 185.3 101 81.2
MCO11G090 Micromonas commoda HOM05D006155 ORTHO05D007529 8.6e-45 184.9 213 46.9
Cre03.g193000 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 8.9e-42 174.9 210 45.7
Psat6g138760 Pisum sativum HOM05D006155 ORTHO05D007529 4.4e-41 172.6 128 64.1
SGA_v2.0_scaffold31G12610 Striga asiatica HOM05D006155 ORTHO05D007529 1.5e-36 157.5 210 43.8
QL06p021877 Quercus lobata HOM05D006155 ORTHO05D007529 1.2e-33 147.9 108 63.9
SMO115G0208 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 4.4e-33 146.0 214 38.8
Rhsim09G0043000 Rhododendron simsii HOM05D006155 ORTHO05D007529 2.9e-32 143.3 114 67.5
Hma1.2p1_0042F.1_g025660 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 9.2e-31 138.3 95 67.4
Hma1.2p1_0144F.1_g065125 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 9.2e-31 138.3 95 67.4
AUR62035887 Chenopodium quinoa HOM05D006155 ORTHO05D007529 2.1e-30 137.1 113 61.9
Zm00001eb191500 Zea mays HOM05D006155 ORTHO05D007529 7.8e-30 135.2 111 61.3
Rhsim09G0041400 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.1e-26 123.2 109 59.6
Lj5g0004239 Lotus japonicus HOM05D006155 ORTHO05D007529 2.6e-25 120.2 146 47.3
Lj5g0006737 Lotus japonicus HOM05D006155 ORTHO05D007529 2.6e-25 120.2 146 47.3
SEGI_12787 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 4.9e-24 115.9 116 55.2
SEGI_32209 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 4.1e-23 112.8 82 67.1
Actinidia37388 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.3e-21 107.8 61 80.3
SGA_v2.0_scaffold31G12618 Striga asiatica HOM05D006155 ORTHO05D007529 3.1e-18 96.7 190 34.7
Cre01.g025100 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 3.4e-17 93.2 171 35.1
Rhsim09G0048000 Rhododendron simsii HOM05D000029 ORTHO05D002162 4.4e-17 92.8 83 57.8
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 7.1e-15 85.5 180 35.6
AUR62035886 Chenopodium quinoa HOM05D006155 ORTHO05D007529 1.2e-14 84.7 55 63.6
SalBow7G2104 Salvia bowleyana HOM05D000708 ORTHO05D001418 6.2e-11 72.4 48 68.8
C09p23060 Brassica napus HOM05D006155 ORTHO05D007529 1.1e-10 71.6 72 52.8


User provided reference genes

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