Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g06620 Coffea canephora HOM05D002511 ORTHO05D034813 1.8e-41 172.2 86 100.0
Cc02_g26650 Coffea canephora HOM05D002511 ORTHO05D013388 2.9e-28 128.3 95 70.5
Cc03_g07730 Coffea canephora HOM05D002511 ORTHO05D003982 2.0e-16 89.0 62 75.8
Manes.15G052800 Manihot esculenta HOM05D002511 ORTHO05D003982 4.1e-14 81.3 62 66.1
Manes.03G148600 Manihot esculenta HOM05D002511 ORTHO05D003982 1.6e-13 79.3 62 64.5
Atru.chr4.1717 Acer truncatum HOM05D002511 ORTHO05D003982 4.5e-13 77.8 62 66.1
MD15G1407100 Malus domestica HOM05D002511 ORTHO05D003982 4.5e-13 77.8 62 66.1
QL06p024292 Quercus lobata HOM05D002511 ORTHO05D003982 4.5e-13 77.8 62 66.1
AL1G14530 Arabidopsis lyrata HOM05D002511 ORTHO05D003982 5.9e-13 77.4 62 64.5
BolC4t23246H Brassica oleracea HOM05D002511 ORTHO05D003982 5.9e-13 77.4 70 64.3
Carub.0001s0406 Capsella rubella HOM05D002511 ORTHO05D003982 5.9e-13 77.4 62 66.1
Ca_17242_v3 Cicer arietinum L. HOM05D002511 ORTHO05D003982 5.9e-13 77.4 65 64.6
Ciclev10004239m.g Citrus clementina HOM05D002511 ORTHO05D003982 5.9e-13 77.4 62 66.1
MELO3C020453.2 Cucumis melo HOM05D002511 ORTHO05D003982 5.9e-13 77.4 62 66.1
THA.LOC104801046 Tarenaya hassleriana HOM05D002511 ORTHO05D003982 5.9e-13 77.4 62 66.1
TWI53G1146 Tripterygium wilfordii HOM05D002511 ORTHO05D003982 5.9e-13 77.4 62 66.1
TWI73G0115 Tripterygium wilfordii HOM05D002511 ORTHO05D003982 5.9e-13 77.4 62 66.1
GSVIVG01003914001 Vitis vinifera HOM05D002511 ORTHO05D003982 5.9e-13 77.4 62 66.1
GSVIVG01026206001 Vitis vinifera HOM05D002511 ORTHO05D003982 5.9e-13 77.4 62 66.1
Aa31LG5G4390 Aethionema arabicum HOM05D002511 ORTHO05D003982 7.7e-13 77.0 62 66.1
AT1G04810 Arabidopsis thaliana HOM05D002511 ORTHO05D003982 7.7e-13 77.0 62 64.5
Carub.0004s1409 Capsella rubella HOM05D002511 ORTHO05D003982 7.7e-13 77.0 62 66.1
Cpa.g.sc59.130 Carica papaya HOM05D002511 ORTHO05D003982 7.7e-13 77.0 62 64.5
Ca_30368_v3 Cicer arietinum L. HOM05D002511 ORTHO05D003982 7.7e-13 77.0 62 66.1
Gohir.D02G123300 Gossypium hirsutum HOM05D002511 ORTHO05D003982 7.7e-13 77.0 62 66.1
Gorai.005G131000 Gossypium raimondii HOM05D002511 ORTHO05D003982 7.7e-13 77.0 62 66.1
Lalb_Chr05g0222041 Lupinus albus HOM05D002511 ORTHO05D003982 7.7e-13 77.0 62 66.1
Lalb_Chr09g0330731 Lupinus albus HOM05D002511 ORTHO05D003982 7.7e-13 77.0 62 66.1
Lalb_Chr16g0387381 Lupinus albus HOM05D002511 ORTHO05D003982 7.7e-13 77.0 62 66.1
Psat7g004760 Pisum sativum HOM05D002511 ORTHO05D003982 7.7e-13 77.0 62 66.1
THA.LOC104826112 Tarenaya hassleriana HOM05D002511 ORTHO05D003982 7.7e-13 77.0 62 66.1
Cfa014923 Carpinus fangiana HOM05D002511 ORTHO05D003982 1.0e-12 76.6 62 64.5
CiPaw.01G122300 Carya illinoinensis HOM05D002511 ORTHO05D003982 1.0e-12 76.6 62 64.5
CiPaw.02G066800 Carya illinoinensis HOM05D002511 ORTHO05D003982 1.0e-12 76.6 62 64.5
Haze_11600 Corylus avellana HOM05D002511 ORTHO05D003982 1.0e-12 76.6 62 64.5
Gohir.A03G094100 Gossypium hirsutum HOM05D002511 ORTHO05D003982 1.0e-12 76.6 62 64.5
Aa31LG1G20070 Aethionema arabicum HOM05D002511 ORTHO05D003982 1.3e-12 76.3 62 64.5
CANSAT78G0567 Cannabis sativa HOM05D002511 ORTHO05D003982 1.3e-12 76.3 62 64.5
ClCG06G007710 Citrullus lanatus HOM05D002511 ORTHO05D003982 1.3e-12 76.3 62 64.5
Eucgr.H00058 Eucalyptus grandis HOM05D002511 ORTHO05D003982 1.3e-12 76.3 62 64.5
Prupe.1G554900 Prunus persica HOM05D002511 ORTHO05D003982 1.3e-12 76.3 62 66.1
Thhalv10006675m.g Eutrema salsugineum HOM05D002511 ORTHO05D003982 1.7e-12 75.9 62 64.5
Medtr8g106120 Medicago truncatula HOM05D002511 ORTHO05D003982 1.7e-12 75.9 62 64.5
TPR.G12873 Trifolium pratense HOM05D002511 ORTHO05D003982 1.7e-12 75.9 62 66.1
CARHR004210 Cardamine hirsuta HOM05D002511 ORTHO05D003982 2.3e-12 75.5 62 64.5
AL4G28170 Arabidopsis lyrata HOM05D002511 ORTHO05D003982 2.9e-12 75.1 62 66.1
AT2G32730 Arabidopsis thaliana HOM05D002511 ORTHO05D003982 2.9e-12 75.1 62 66.1
arahy.Tifrunner.gnm1.ann1.51XJUZ Arachis hypogaea HOM05D002511 ORTHO05D003982 2.9e-12 75.1 62 64.5
arahy.Tifrunner.gnm1.ann1.KIW01B Arachis hypogaea HOM05D002511 ORTHO05D003982 2.9e-12 75.1 62 64.5
Glyma.05G241500 Glycine max HOM05D002511 ORTHO05D003982 2.9e-12 75.1 62 64.5
Glyma.08G048800 Glycine max HOM05D002511 ORTHO05D003982 2.9e-12 75.1 62 64.5
Phvul.002G324700 Phaseolus vulgaris HOM05D002511 ORTHO05D003982 2.9e-12 75.1 62 64.5
VMungo0251G1627 Vigna mungo HOM05D002511 ORTHO05D003982 2.9e-12 75.1 62 64.5
BcaB02g10496 Brassica carinata HOM05D002511 ORTHO05D003982 3.8e-12 74.7 62 64.5
C04p16890 Brassica napus HOM05D002511 ORTHO05D003982 3.8e-12 74.7 62 64.5
Duzib212G0245 Durio zibethinus HOM05D002511 ORTHO05D003982 3.8e-12 74.7 62 64.5
PGR142G3676 Punica granatum HOM05D002511 ORTHO05D003982 3.8e-12 74.7 62 62.9
COL.COLO4_10274 Corchorus olitorius HOM05D002511 ORTHO05D003982 5.0e-12 74.3 62 64.5
CsaV3_2G011480 Cucumis sativus L. HOM05D002511 ORTHO05D003982 5.0e-12 74.3 62 64.5
Gohir.A09G204800 Gossypium hirsutum HOM05D002511 ORTHO05D003982 5.0e-12 74.3 62 64.5
Potri.001G314300 Populus trichocarpa HOM05D002511 ORTHO05D003982 5.0e-12 74.3 62 64.5
Potri.017G054400 Populus trichocarpa HOM05D002511 ORTHO05D003982 5.0e-12 74.3 62 64.5
Sabra16G0198800 Salix brachista HOM05D002511 ORTHO05D003982 5.0e-12 74.3 62 64.5
Sabra17G0046200 Salix brachista HOM05D002511 ORTHO05D003982 5.0e-12 74.3 62 64.5
Sed0001273 Sechium edule HOM05D002511 ORTHO05D003982 5.0e-12 74.3 62 62.9
Thecc.04G205300 Theobroma cacao HOM05D002511 ORTHO05D003982 5.0e-12 74.3 62 64.5
CARHR126620 Cardamine hirsuta HOM05D002511 ORTHO05D003982 6.6e-12 73.9 62 64.5
Thhalv10016177m.g Eutrema salsugineum HOM05D002511 ORTHO05D003982 6.6e-12 73.9 62 64.5
Gohir.D05G324800 Gossypium hirsutum HOM05D002511 ORTHO05D003982 6.6e-12 73.9 62 62.9
Gorai.006G222100 Gossypium raimondii HOM05D002511 ORTHO05D003982 6.6e-12 73.9 62 62.9
Gorai.009G349000 Gossypium raimondii HOM05D002511 ORTHO05D003982 6.6e-12 73.9 62 62.9
Prupe.1G006500 Prunus persica HOM05D002511 ORTHO05D003982 6.6e-12 73.9 62 64.5
Sp4g15070 Schrenkiella parvula HOM05D002511 ORTHO05D003982 6.6e-12 73.9 62 64.5
Thecc.04G205200 Theobroma cacao HOM05D002511 ORTHO05D003982 6.6e-12 73.9 62 64.5
vmacro15524 Vaccinium macrocarpon HOM05D002511 ORTHO05D003982 6.6e-12 73.9 64 65.6
Duzib268G1285 Durio zibethinus HOM05D002511 ORTHO05D003982 8.6e-12 73.6 62 62.9
BraA05t20226Z Brassica rapa HOM05D002511 ORTHO05D003982 1.1e-11 73.2 62 62.9
CSS0028065 Camellia sinensis var. sinensis HOM05D002511 ORTHO05D003982 1.1e-11 73.2 62 66.1
Dinv29588 Davidia involucrata HOM05D002511 ORTHO05D003982 1.1e-11 73.2 62 66.1
Gohir.A02G023301 Gossypium hirsutum HOM05D002511 ORTHO05D003982 1.1e-11 73.2 62 62.9
MD08G1218700 Malus domestica HOM05D002511 ORTHO05D013388 1.1e-11 73.2 62 62.9
SHI27697 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-11 73.2 62 59.7
TPR.G10133 Trifolium pratense HOM05D002511 ORTHO05D003982 1.1e-11 73.2 71 57.7
HanXRQChr07g0185721 Helianthus annuus HOM05D002511 ORTHO05D003982 1.5e-11 72.8 62 66.1
Medtr2g067250 Medicago truncatula HOM05D002511 ORTHO05D003982 1.5e-11 72.8 62 62.9
unitig_747.g21696 Utricularia gibba HOM05D002511 ORTHO05D003982 1.5e-11 72.8 65 63.1
Gohir.D02G030800 Gossypium hirsutum HOM05D002511 ORTHO05D003982 1.9e-11 72.4 62 62.9
Gorai.005G034100 Gossypium raimondii HOM05D002511 ORTHO05D003982 1.9e-11 72.4 62 62.9
Lj3A421G12 Lonicera japonica HOM05D002511 ORTHO05D003982 1.9e-11 72.4 66 63.6
Lj4g0013237 Lotus japonicus HOM05D002511 ORTHO05D003982 1.9e-11 72.4 58 67.2
Aqoxy5G00076 Aquilegia oxysepala HOM05D002511 ORTHO05D003982 2.5e-11 72.0 62 66.1
BcaC02g07888 Brassica carinata HOM05D002511 ORTHO05D003982 2.5e-11 72.0 62 62.9
A04p25270 Brassica napus HOM05D002511 ORTHO05D003982 2.5e-11 72.0 62 62.9
C04p62330 Brassica napus HOM05D002511 ORTHO05D003982 2.5e-11 72.0 62 62.9
BolC4t27706H Brassica oleracea HOM05D002511 ORTHO05D003982 2.5e-11 72.0 62 62.9
BraA04t18030Z Brassica rapa HOM05D002511 ORTHO05D003982 2.5e-11 72.0 62 62.9
DCAR_026606 Daucus carota HOM05D002511 ORTHO05D003982 2.5e-11 72.0 62 66.1
Hma1.2p1_1382F.1_g279360 Hydrangea macrophylla HOM05D002511 ORTHO05D003982 2.5e-11 72.0 62 66.1
Hma1.2p1_2176F.1_g316110 Hydrangea macrophylla HOM05D002511 ORTHO05D003982 2.5e-11 72.0 62 66.1
Nn1g07855 Nelumbo nucifera HOM05D002511 ORTHO05D003982 2.5e-11 72.0 62 66.1
Nn3g19965 Nelumbo nucifera HOM05D002511 ORTHO05D003982 2.5e-11 72.0 62 66.1
Oeu001471.1 Olea europaea HOM05D002511 ORTHO05D003982 2.5e-11 72.0 62 66.1
Oeu021171.1 Olea europaea HOM05D002511 ORTHO05D003982 2.5e-11 72.0 62 66.1
SalBow8G2557 Salvia bowleyana HOM05D002511 ORTHO05D003982 2.5e-11 72.0 62 66.1
TAR365G0717 Trochodendron aralioides HOM05D002511 ORTHO05D013388 2.5e-11 72.0 62 66.1
Actinidia11411 Actinidia chinensis HOM05D002511 ORTHO05D013388 3.3e-11 71.6 62 64.5
Actinidia39965 Actinidia chinensis HOM05D002511 ORTHO05D003982 3.3e-11 71.6 62 64.5
MSTRG.4212 Avicennia marina HOM05D002511 ORTHO05D003982 3.3e-11 71.6 62 64.5
MSTRG.9820 Avicennia marina HOM05D002511 ORTHO05D003982 3.3e-11 71.6 62 66.1
BcaB06g28630 Brassica carinata HOM05D002511 ORTHO05D003982 3.3e-11 71.6 62 62.9
A03p18290 Brassica napus HOM05D002511 ORTHO05D003982 3.3e-11 71.6 62 62.9
C03p21340 Brassica napus HOM05D002511 ORTHO05D003982 3.3e-11 71.6 62 62.9
BolC3t14517H Brassica oleracea HOM05D002511 ORTHO05D003982 3.3e-11 71.6 62 62.9
BraA03t11089Z Brassica rapa HOM05D002511 ORTHO05D003982 3.3e-11 71.6 62 62.9
Dinv38243 Davidia involucrata HOM05D002511 ORTHO05D003982 3.3e-11 71.6 62 64.5
CSS0036933 Camellia sinensis var. sinensis HOM05D002511 ORTHO05D003982 4.2e-11 71.2 62 64.5
Gohir.D09G198500 Gossypium hirsutum HOM05D002511 ORTHO05D003982 4.2e-11 71.2 62 61.3
TPR.G29017 Trifolium pratense HOM05D002511 ORTHO05D034813 4.2e-11 71.2 54 72.2
FvH4_4g00680 Fragaria vesca HOM05D002511 ORTHO05D003982 5.5e-11 70.9 62 61.3
FAN17G0170 Fragaria x ananassa HOM05D002511 ORTHO05D003982 5.5e-11 70.9 62 61.3
FAN22G1700 Fragaria x ananassa HOM05D002511 ORTHO05D003982 5.5e-11 70.9 62 61.3
MD04G1006300 Malus domestica HOM05D002511 ORTHO05D003982 5.5e-11 70.9 62 62.9
RcHm_v2.0_Chr4g0386391 Rosa chinensis HOM05D002511 ORTHO05D003982 5.5e-11 70.9 62 61.3
SEGI_25283 Sequoiadendron giganteum HOM05D002511 ORTHO05D003982 5.5e-11 70.9 62 64.5
SGA_v2.0_scaffold410G51125 Striga asiatica HOM05D002511 ORTHO05D003982 7.2e-11 70.5 62 64.5
TAR362G1109 Trochodendron aralioides HOM05D002511 ORTHO05D003982 7.2e-11 70.5 62 64.5
ECA233G0877 Erigeron canadensis HOM05D002511 ORTHO05D003982 9.5e-11 70.1 62 64.5
Duzib151G0338 Durio zibethinus HOM05D002511 ORTHO05D003982 1.2e-10 69.7 62 59.7
TAR636G1855 Trochodendron aralioides HOM05D002511 ORTHO05D003982 1.2e-10 69.7 62 62.9
Rhsim02G0056700 Rhododendron simsii HOM05D002511 ORTHO05D003982 1.6e-10 69.3 62 64.5
ATR1145G051 Amborella trichopoda HOM05D002511 ORTHO05D003982 2.1e-10 68.9 62 62.9
FAN12G1391 Fragaria x ananassa HOM05D002511 ORTHO05D003982 2.1e-10 68.9 62 59.7
SalBow3G0794 Salvia bowleyana HOM05D002511 ORTHO05D003982 2.1e-10 68.9 62 62.9
Migut.M00547 Erythranthe guttata HOM05D002511 ORTHO05D003982 2.8e-10 68.6 62 64.5
Migut.N00376 Erythranthe guttata HOM05D002511 ORTHO05D003982 3.6e-10 68.2 62 62.9
AUR62033023 Chenopodium quinoa HOM05D002511 ORTHO05D003982 4.7e-10 67.8 62 61.3
Nitab4.5_0004214g0040 Nicotiana tabacum HOM05D002511 ORTHO05D003982 4.7e-10 67.8 63 61.9
Oeu006728.1 Olea europaea HOM05D002511 ORTHO05D003982 4.7e-10 67.8 62 62.9
Zm00001eb071300 Zea mays HOM05D002511 ORTHO05D003982 4.7e-10 67.8 62 61.3
Peaxi162Scf00047g00633 Petunia axillaris HOM05D002511 ORTHO05D003982 6.1e-10 67.4 62 62.9
Zm00001eb430580 Zea mays HOM05D002511 ORTHO05D003982 6.1e-10 67.4 62 61.3
EL10Ac3g07489 Beta vulgaris HOM05D002511 ORTHO05D003982 8.0e-10 67.0 62 61.3
Gohir.A05G322400 Gossypium hirsutum HOM05D002511 ORTHO05D003982 8.0e-10 67.0 62 59.7
CAN.G500.8 Capsicum annuum HOM05D002511 ORTHO05D003982 1.0e-09 66.6 62 62.9
PGSC0003DMG400029633 Solanum tuberosum HOM05D002511 ORTHO05D003982 1.0e-09 66.6 62 62.9
HPP92_003000 Vanilla planifolia HOM05D002511 ORTHO05D003982 1.0e-09 66.6 62 61.3
Mapoly0034s0048 Marchantia polymorpha HOM05D002511 ORTHO05D003982 1.4e-09 66.2 62 58.1
Nitab4.5_0002428g0010 Nicotiana tabacum HOM05D002511 ORTHO05D003982 1.4e-09 66.2 62 61.3
HanXRQChr02g0058871 Helianthus annuus HOM05D002511 ORTHO05D003982 1.8e-09 65.9 62 62.9
Sc13g0000120 Simmondsia chinensis HOM05D002511 ORTHO05D003982 1.8e-09 65.9 62 59.7
Zm00001eb170990 Zea mays HOM05D002511 ORTHO05D003982 1.8e-09 65.9 62 59.7
Zm00001eb414040 Zea mays HOM05D002511 ORTHO05D003982 1.8e-09 65.9 62 59.7
AUR62020813 Chenopodium quinoa HOM05D002511 ORTHO05D003982 2.3e-09 65.5 62 59.7
Solyc09g091750.3 Solanum lycopersicum HOM05D002511 ORTHO05D003982 2.3e-09 65.5 62 61.3
Sopen09g034640 Solanum pennellii HOM05D002511 ORTHO05D003982 2.3e-09 65.5 62 61.3
CAN.G765.18 Capsicum annuum HOM05D002511 ORTHO05D003982 3.0e-09 65.1 62 59.7
AUR62032921 Chenopodium quinoa HOM05D002511 ORTHO05D003982 4.0e-09 64.7 58 63.8
Migut.G00673 Erythranthe guttata HOM05D002511 ORTHO05D003982 4.0e-09 64.7 62 58.1
CARHR004200 Cardamine hirsuta HOM05D002511 ORTHO05D003982 5.2e-09 64.3 62 56.5
Lsat_1_v5_gn_6_60460 Lactuca sativa HOM05D002511 ORTHO05D003982 6.8e-09 63.9 57 64.9
Os08g0224700 Oryza sativa ssp. japonica HOM05D002511 ORTHO05D003982 8.9e-09 63.5 62 59.7
SMO351G0298 Selaginella moellendorffii HOM05D002511 ORTHO05D003982 8.9e-09 63.5 62 59.7
Aa31LG1G20090 Aethionema arabicum HOM05D002511 ORTHO05D000709 1.2e-08 63.2 58 56.9
Aqoxy5G01459 Aquilegia oxysepala HOM05D002511 ORTHO05D003982 1.5e-08 62.8 62 61.3
Nitab4.5_0003502g0020 Nicotiana tabacum HOM05D002511 ORTHO05D003982 1.5e-08 62.8 62 59.7
PSO170G3012 Papaver somniferum HOM05D002511 ORTHO05D003982 1.5e-08 62.8 62 59.7
PSO357G0370 Papaver somniferum HOM05D002511 ORTHO05D003982 1.5e-08 62.8 62 59.7
Hund22577 Selenicereus undatus HOM05D002511 ORTHO05D003982 1.5e-08 62.8 62 56.5
Solyc05g053650.3 Solanum lycopersicum HOM05D002511 ORTHO05D003982 2.0e-08 62.4 62 58.1
Sopen05g032150 Solanum pennellii HOM05D002511 ORTHO05D003982 2.0e-08 62.4 62 58.1
PGSC0003DMG400015761 Solanum tuberosum HOM05D002511 ORTHO05D003982 2.0e-08 62.4 62 58.1
Pp3c20_16700 Physcomitrium patens HOM05D002511 ORTHO05D003982 2.6e-08 62.0 60 56.7
CDE06G2028 Ceratophyllum demersum HOM05D002511 ORTHO05D003982 7.5e-08 60.5 59 54.2
Pp3c8_15860 Physcomitrium patens HOM05D002511 ORTHO05D003982 7.5e-08 60.5 58 60.3
Pp3c24_17290 Physcomitrium patens HOM05D002511 ORTHO05D003982 1.7e-07 59.3 58 53.4
AL2G18495 Arabidopsis lyrata HOM05D002511 ORTHO05D003982 2.2e-07 58.9 62 51.6
Ah.10g036160 Amaranthus hybridus HOM05D002511 ORTHO05D003982 4.9e-07 57.8 59 55.9
CBR_g72635 Chara braunii HOM05D002511 ORTHO05D003982 6.3e-07 57.4 62 51.6
AUR62040773 Chenopodium quinoa HOM05D002511 ORTHO05D003982 1.8e-06 55.8 57 49.1
PSO339G3711 Papaver somniferum HOM05D002511 ORTHO05D003982 1.8e-06 55.8 71 52.1
Cre17.g727950 Chlamydomonas reinhardtii HOM05D002511 ORTHO05D003982 4.1e-06 54.7 62 50.0


User provided reference genes

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