Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g06490 Coffea canephora HOM05D008171 ORTHO05D006541 4.1e-171 604.7 328 100.0
MSTRG.14227 Avicennia marina HOM05D014524 ORTHO05D006541 6.5e-44 182.2 268 45.9
SGA_v2.0_scaffold577G53017 Striga asiatica HOM05D014524 ORTHO05D006541 1.4e-41 174.5 274 44.2
Migut.N00307 Erythranthe guttata HOM05D014524 ORTHO05D006541 2.8e-39 166.8 328 38.7
SGA_v2.0_scaffold31G12622 Striga asiatica HOM05D014524 ORTHO05D006541 5.3e-38 162.5 357 39.2
Actinidia31699 Actinidia chinensis HOM05D008171 ORTHO05D006541 9.1e-38 161.8 333 38.1
PGSC0003DMG400000820 Solanum tuberosum HOM05D008171 ORTHO05D006541 1.6e-29 134.4 235 43.8
Dinv29788 Davidia involucrata HOM05D008171 ORTHO05D006541 2.7e-29 133.7 217 41.9
Dinv43748 Davidia involucrata HOM05D008729 ORTHO05D006541 1.9e-27 127.5 317 36.3
SalBow8G4971 Salvia bowleyana HOM05D014524 ORTHO05D006541 1.2e-26 124.8 276 38.8
SalBow3G3100 Salvia bowleyana HOM05D014524 ORTHO05D006541 1.6e-26 124.4 265 40.8
Rhsim07G0050800 Rhododendron simsii HOM05D008171 ORTHO05D006541 3.6e-26 123.2 272 36.0
Gohir.D11G251100 Gossypium hirsutum HOM05D008171 ORTHO05D006541 6.1e-26 122.5 217 41.0
Gorai.007G269300 Gossypium raimondii HOM05D008171 ORTHO05D006541 6.1e-26 122.5 264 37.5
Sopen05g005780 Solanum pennellii HOM05D008171 ORTHO05D006541 6.1e-26 122.5 266 38.3
Manes.03G156600 Manihot esculenta HOM05D008171 ORTHO05D006541 1.0e-25 121.7 312 34.0
Gohir.A11G241700 Gossypium hirsutum HOM05D008171 ORTHO05D006541 8.8e-25 118.6 263 36.1
Duzib177G0581 Durio zibethinus HOM05D008171 ORTHO05D006541 7.5e-24 115.5 263 36.5
Atru.chr3.807 Acer truncatum HOM05D008171 ORTHO05D006541 2.8e-23 113.6 267 32.6
TWI09G1485 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 1.8e-22 110.9 264 36.0
Rhsim06G0142400 Rhododendron simsii HOM05D008729 ORTHO05D006541 3.1e-22 110.2 227 38.8
COL.COLO4_08914 Corchorus olitorius HOM05D008171 ORTHO05D006541 5.4e-22 109.4 261 33.7
Thecc.04G268400 Theobroma cacao HOM05D008171 ORTHO05D006541 3.5e-21 106.7 272 34.2
Actinidia32333 Actinidia chinensis HOM05D008171 ORTHO05D006541 2.3e-20 104.0 283 33.9
ClCG09G011900 Citrullus lanatus HOM05D008171 ORTHO05D006541 2.3e-20 104.0 268 33.2
Nitab4.5_0009780g0020 Nicotiana tabacum HOM05D008171 ORTHO05D006541 6.6e-20 102.4 107 47.7
Nitab4.5_0004705g0050 Nicotiana tabacum HOM05D008171 ORTHO05D006541 8.6e-20 102.1 126 45.2
Cpa.g.sc59.27 Carica papaya HOM05D008171 ORTHO05D006541 1.1e-19 101.7 287 31.7
TWI09G0902 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 1.9e-19 100.9 266 33.8
Sabra04G0016000 Salix brachista HOM05D008171 ORTHO05D006541 4.3e-19 99.8 332 29.5
COL.COLO4_36427 Corchorus olitorius HOM05D008171 ORTHO05D006541 5.6e-19 99.4 267 31.8
Oeu061870.1 Olea europaea HOM05D008729 ORTHO05D006541 5.6e-19 99.4 117 45.3
Sed0013719 Sechium edule HOM05D008171 ORTHO05D006541 5.6e-19 99.4 154 39.0
Potri.004G028100 Populus trichocarpa HOM05D008171 ORTHO05D006541 9.5e-19 98.6 276 29.7
Cc00_g01630 Coffea canephora HOM05D008729 ORTHO05D006541 1.6e-18 97.8 98 54.1
Eucgr.F04204 Eucalyptus grandis HOM05D008729 ORTHO05D006541 2.8e-18 97.1 162 38.9
Potri.018G147100 Populus trichocarpa HOM05D008729 ORTHO05D006541 1.4e-17 94.7 220 32.7
Sabra18G0128500 Salix brachista HOM05D008171 ORTHO05D006541 1.4e-17 94.7 220 32.7
DCAR_002271 Daucus carota HOM05D008729 ORTHO05D006541 3.0e-17 93.6 276 31.9
PGR119G2083 Punica granatum HOM05D008729 ORTHO05D006541 8.9e-17 92.0 165 35.8
Ca_04035_v3 Cicer arietinum L. HOM05D008729 ORTHO05D006541 2.6e-16 90.5 181 35.9
Haze_11490 Corylus avellana HOM05D008171 ORTHO05D006541 4.4e-16 89.7 303 31.0
VMungo1383G3710 Vigna mungo HOM05D008729 ORTHO05D006541 7.5e-16 89.0 266 31.2
Glyma.18G253500 Glycine max HOM05D008729 ORTHO05D006541 2.2e-15 87.4 229 33.6
Phvul.008G045500 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 8.3e-15 85.5 264 29.9
Prupe.1G051700 Prunus persica HOM05D013250 ORTHO05D006541 2.4e-14 84.0 222 32.0
Thhalv10016999m.g Eutrema salsugineum HOM05D008171 ORTHO05D006541 3.2e-14 83.6 256 29.3
Phvul.008G026200 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 4.1e-14 83.2 265 30.2
QL06p021862 Quercus lobata HOM05D008171 ORTHO05D006541 7.0e-14 82.4 270 32.6
AL4G27600 Arabidopsis lyrata HOM05D008171 ORTHO05D006541 1.6e-13 81.3 258 31.8
CiPaw.01G175900 Carya illinoinensis HOM05D008171 ORTHO05D006541 1.6e-13 81.3 89 48.3
AT2G32235 Arabidopsis thaliana HOM05D008171 ORTHO05D006541 2.7e-13 80.5 259 31.3
Oeu023142.1 Olea europaea HOM05D008171 ORTHO05D006541 2.7e-13 80.5 309 28.8
BcaB02g10481 Brassica carinata HOM05D008171 ORTHO05D006541 3.5e-13 80.1 324 25.9
Carub.0004s1355 Capsella rubella HOM05D008171 ORTHO05D006541 4.6e-13 79.7 258 31.4
CAN.G184.75 Capsicum annuum HOM05D001868 ORTHO05D009153 4.6e-13 79.7 125 42.4
TPR.G16999 Trifolium pratense HOM05D008729 ORTHO05D006541 1.0e-12 78.6 213 31.0
CsaV3_3G049130 Cucumis sativus L. HOM05D008171 ORTHO05D006541 2.3e-12 77.4 217 30.0
COL.COLO4_37412 Corchorus olitorius HOM05D008171 ORTHO05D006541 3.9e-12 76.6 59 55.9
SalBow3G0625 Salvia bowleyana HOM05D014524 ORTHO05D006541 3.9e-12 76.6 218 36.2
Medtr5g069720 Medicago truncatula HOM05D008729 ORTHO05D006541 6.6e-12 75.9 192 33.9
RcHm_v2.0_Chr4g0396051 Rosa chinensis HOM05D013250 ORTHO05D006541 6.6e-12 75.9 226 29.6
FAN22G0719 Fragaria x ananassa HOM05D013250 ORTHO05D006541 8.6e-12 75.5 242 28.9
FvH4_4g05130 Fragaria vesca HOM05D013250 ORTHO05D006541 1.9e-11 74.3 176 31.8
Lj1g0024023 Lotus japonicus HOM05D008729 ORTHO05D006541 1.9e-11 74.3 195 33.3
Thecc.05G282200 Theobroma cacao HOM05D008171 ORTHO05D006541 1.9e-11 74.3 82 47.6
TPR.G6386 Trifolium pratense HOM05D008729 ORTHO05D006541 1.9e-11 74.3 178 34.8
BraA05t20241Z Brassica rapa HOM05D008171 ORTHO05D006541 2.5e-11 73.9 324 24.4
MD16G1230200 Malus domestica HOM05D013250 ORTHO05D006541 3.3e-11 73.6 248 29.8
Psat3g195600 Pisum sativum HOM05D008729 ORTHO05D006541 4.3e-11 73.2 173 33.5
Cfa014809 Carpinus fangiana HOM05D008171 ORTHO05D006541 5.6e-11 72.8 276 29.0
FAN12G1247 Fragaria x ananassa HOM05D013250 ORTHO05D006541 7.3e-11 72.4 179 31.3
Medtr4g072430 Medicago truncatula HOM05D008729 ORTHO05D006541 7.3e-11 72.4 198 32.3
Medtr7g007830 Medicago truncatula HOM05D008729 ORTHO05D006541 1.2e-10 71.6 123 37.4
C04p17400 Brassica napus HOM05D008171 ORTHO05D006541 2.1e-10 70.9 324 25.9
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 2.1e-10 70.9 324 25.9
Aa31LG5G4300 Aethionema arabicum HOM05D008171 ORTHO05D006541 2.8e-10 70.5 262 29.8
FvH4_4g33320 Fragaria vesca HOM05D022272 ORTHO05D006541 2.8e-10 70.5 127 38.6
CARHR126020 Cardamine hirsuta HOM05D008171 ORTHO05D006541 4.7e-10 69.7 255 29.8
A05p13010 Brassica napus HOM05D008171 ORTHO05D006541 6.2e-10 69.3 324 25.0
C03p21100 Brassica napus HOM05D008171 ORTHO05D006541 8.0e-10 68.9 195 30.3
Medtr4g072710 Medicago truncatula HOM05D008729 ORTHO05D006541 8.0e-10 68.9 192 32.3
Hma1.2p1_1240F.1_g269530 Hydrangea macrophylla HOM05D008729 ORTHO05D006541 1.0e-09 68.6 89 42.7
Prupe.1G335500 Prunus persica HOM05D008171 ORTHO05D006541 1.0e-09 68.6 106 36.8
FAN12G2236 Fragaria x ananassa HOM05D022272 ORTHO05D006541 1.8e-09 67.8 127 35.4
Medtr4g072520 Medicago truncatula HOM05D008729 ORTHO05D006541 1.8e-09 67.8 190 32.6
FAN22G1062 Fragaria x ananassa HOM05D022272 ORTHO05D006541 2.3e-09 67.4 128 35.2
A03p18070 Brassica napus HOM05D008171 ORTHO05D006541 5.2e-09 66.2 196 30.6
FAN07G2840 Fragaria x ananassa HOM05D004513 ORTHO05D005459 6.8e-09 65.9 125 33.6
FAN07G0121 Fragaria x ananassa HOM05D022272 ORTHO05D006541 1.2e-08 65.1 123 34.1
BolC3t14492H Brassica oleracea HOM05D008171 ORTHO05D006541 1.5e-08 64.7 209 28.2
MELO3C003414.2 Cucumis melo HOM05D008171 ORTHO05D006541 2.0e-08 64.3 104 35.6
THA.LOC104826159 Tarenaya hassleriana HOM05D008171 ORTHO05D006541 2.0e-08 64.3 259 27.8
unitig_21.g20743 Utricularia gibba HOM05D050672 ORTHO05D006541 4.4e-08 63.2 44 56.8
BcaB01g03996 Brassica carinata HOM05D008171 ORTHO05D006541 5.8e-08 62.8 244 27.9
Lalb_Chr03g0040281 Lupinus albus HOM05D008729 ORTHO05D006541 5.8e-08 62.8 257 29.2
SalBow3G0463 Salvia bowleyana HOM05D014524 ORTHO05D006541 7.5e-08 62.4 32 81.2
DCAR_027373 Daucus carota HOM05D008171 ORTHO05D006541 1.3e-07 61.6 232 27.6
MD13G1018300 Malus domestica HOM05D008171 ORTHO05D006541 1.7e-07 61.2 284 25.4
TPR.G32534 Trifolium pratense HOM05D008729 ORTHO05D006541 1.7e-07 61.2 109 36.7
Medtr4g052440 Medicago truncatula HOM05D008729 ORTHO05D006541 3.7e-07 60.1 42 59.5
FAN17G0494 Fragaria x ananassa HOM05D022272 ORTHO05D006541 4.9e-07 59.7 143 31.5
RcHm_v2.0_Chr4g0442521 Rosa chinensis HOM05D013250 ORTHO05D006541 4.9e-07 59.7 38 60.5
Medtr5g069420 Medicago truncatula HOM05D008729 ORTHO05D006541 6.4e-07 59.3 307 29.6
Medtr5g069080 Medicago truncatula HOM05D008729 ORTHO05D006541 1.1e-06 58.5 42 57.1
Sp4g14600 Schrenkiella parvula HOM05D008171 ORTHO05D006541 1.1e-06 58.5 287 26.5
Nn3g20993 Nelumbo nucifera HOM05D025356 ORTHO05D280360 3.2e-06 57.0 124 31.5
BcaC01g05917 Brassica carinata HOM05D008171 ORTHO05D006541 5.4e-06 56.2 338 25.1
Nn3g20906 Nelumbo nucifera HOM05D025356 ORTHO05D279106 9.2e-06 55.5 124 31.5
Nitab4.5_0000575g0210 Nicotiana tabacum HOM05D008171 ORTHO05D006541 9.2e-06 55.5 99 37.4


User provided reference genes

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