Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 6.3e-150 534.3 304 100.0
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 8.3e-102 374.4 304 69.7
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 9.5e-98 360.9 304 68.8
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.2e-97 360.5 339 62.8
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 2.1e-97 359.8 305 67.9
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 6.1e-97 358.2 304 67.1
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 3.1e-96 355.9 304 66.8
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 5.2e-96 355.1 304 67.8
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 4.4e-95 352.1 304 66.1
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 4.4e-95 352.1 304 66.4
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 5.8e-95 351.7 304 66.4
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 9.8e-95 350.9 304 66.8
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 1.3e-94 350.5 304 66.8
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 2.2e-94 349.7 305 67.2
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 8.3e-94 347.8 304 64.8
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 1.4e-93 347.1 304 64.5
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 1.2e-92 344.0 304 66.4
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.0e-92 343.2 304 66.1
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 2.0e-92 343.2 304 64.5
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 4.6e-92 342.0 304 65.5
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 4.6e-92 342.0 303 66.0
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 7.8e-92 341.3 304 65.8
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 1.3e-91 340.5 299 65.2
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 2.3e-91 339.7 304 65.1
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 3.9e-91 339.0 304 66.8
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 8.6e-91 337.8 304 66.1
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 8.6e-91 337.8 304 65.8
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 1.5e-90 337.0 306 64.7
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.5e-90 337.0 304 64.5
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 1.5e-90 337.0 303 65.3
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 1.9e-90 336.7 304 64.5
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 1.9e-90 336.7 304 64.1
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.5e-90 336.3 304 65.8
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 4.3e-90 335.5 304 63.8
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 5.6e-90 335.1 305 64.6
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 7.3e-90 334.7 304 65.5
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 9.5e-90 334.3 304 63.5
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 9.5e-90 334.3 305 64.9
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 1.2e-89 334.0 305 63.9
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 2.1e-89 333.2 304 65.1
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 2.8e-89 332.8 304 64.1
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 1.1e-88 330.9 305 63.9
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 2.3e-88 329.7 306 64.4
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 2.3e-88 329.7 305 64.6
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 2.3e-88 329.7 389 54.2
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 2.3e-88 329.7 304 63.5
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 6.8e-88 328.2 307 64.5
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 1.5e-87 327.0 322 60.6
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 4.4e-87 325.5 284 65.8
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 2.9e-86 322.8 303 63.7
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 3.7e-86 322.4 304 63.8
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 4.9e-86 322.0 306 62.1
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 1.9e-85 320.1 306 64.1
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 4.1e-85 318.9 304 63.5
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 2.7e-84 316.2 396 52.5
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 6.0e-84 315.1 312 60.6
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 3.9e-83 312.4 304 59.9
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 5.1e-83 312.0 273 66.7
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 6.6e-83 311.6 335 57.3
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 6.6e-83 311.6 305 61.6
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 1.9e-82 310.1 307 61.2
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 1.9e-82 310.1 310 60.0
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 2.5e-82 309.7 367 53.1
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 9.5e-82 307.8 306 59.2
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.2e-81 307.4 276 65.9
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 1.6e-81 307.0 327 57.5
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 2.8e-81 306.2 306 59.2
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 2.3e-80 303.1 308 58.8
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 2.3e-80 303.1 276 63.4
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 2.3e-80 303.1 304 60.2
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 3.1e-80 302.8 312 59.3
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 4.0e-80 302.4 308 59.1
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 4.0e-80 302.4 307 59.3
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 4.0e-80 302.4 308 59.1
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 4.0e-80 302.4 307 58.6
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 5.2e-80 302.0 304 60.2
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 6.8e-80 301.6 307 59.3
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 6.8e-80 301.6 307 59.3
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 7.6e-79 298.1 306 57.8
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 1.7e-78 297.0 262 65.3
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 4.9e-78 295.4 282 63.1
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 6.4e-78 295.0 304 58.9
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 1.4e-77 293.9 297 59.6
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 5.4e-77 292.0 269 62.1
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 5.4e-77 292.0 304 57.6
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 5.4e-77 292.0 306 60.5
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 1.2e-76 290.8 264 63.3
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 1.6e-76 290.4 320 55.6
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 2.3e-75 286.6 308 55.8
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 2.3e-75 286.6 303 56.1
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 3.9e-75 285.8 308 55.8
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.1e-74 284.3 304 57.9
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 1.1e-74 284.3 303 55.8
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 1.1e-74 284.3 305 57.4
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 1.1e-74 284.3 384 51.6
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 1.1e-74 284.3 308 57.1
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 1.5e-74 283.9 292 58.2
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 1.5e-74 283.9 304 58.6
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 4.7e-73 278.9 225 71.1
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 4.0e-72 275.8 316 54.1
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 8.9e-72 274.6 223 70.4
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 2.0e-71 273.5 269 59.9
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 7.6e-71 271.6 305 56.1
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 3.0e-67 259.6 249 64.3
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 3.9e-67 259.2 309 54.7
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 8.7e-67 258.1 198 72.7
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 1.4e-61 240.7 259 55.6
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 2.3e-59 233.4 183 71.6
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 8.7e-59 231.5 184 72.8
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 9.6e-58 228.0 306 50.0
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 5.8e-55 218.8 241 57.7
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 2.4e-53 213.4 186 68.8
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 3.0e-51 206.5 315 49.8
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 4.3e-50 202.6 184 66.3
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.8e-48 197.2 149 72.5
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 9.3e-45 184.9 256 42.6
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 9.3e-45 184.9 254 46.1
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 1.2e-44 184.5 256 42.6
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 6.7e-43 178.7 281 44.5
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 5.7e-42 175.6 180 53.3
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 4.2e-37 159.5 179 54.2
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 1.3e-35 154.5 130 63.8
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 5.7e-34 149.1 253 36.4
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.6e-33 147.5 119 66.4
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 6.3e-33 145.6 191 46.1
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 3.1e-32 143.3 173 52.6
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 1.4e-29 134.4 119 62.2
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 1.4e-27 127.9 135 58.5
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 8.8e-27 125.2 80 87.5
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 3.4e-23 113.2 240 33.3
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.7e-22 110.9 98 62.2
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 5.0e-22 109.4 185 42.2
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 2.0e-18 97.4 129 47.3
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 2.2e-14 84.0 116 46.6
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 1.1e-13 81.6 116 45.7
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 3.2e-13 80.1 116 45.7
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 5.2e-11 72.8 168 29.2
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 4.4e-10 69.7 66 57.6
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 3.1e-08 63.5 199 31.7
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 1.3e-06 58.2 53 56.6
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 1.3e-06 58.2 53 56.6
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 1.3e-06 58.2 53 56.6
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 1.3e-06 58.2 53 56.6


User provided reference genes

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