Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 0.0e+00 1293.5 653 100.0
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 2.9e-229 798.9 635 65.2
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 2.9e-229 798.9 665 62.7
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 7.2e-228 794.3 666 62.2
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 6.5e-221 771.2 673 61.1
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 3.1e-215 752.3 657 59.8
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 7.7e-214 747.7 654 59.5
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 2.3e-213 746.1 661 59.6
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 1.9e-212 743.0 669 59.6
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 3.3e-212 742.3 660 58.6
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 7.2e-212 741.1 657 59.8
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 1.2e-211 740.3 658 59.3
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 1.2e-211 740.3 656 60.2
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 2.8e-211 739.2 660 58.6
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 1.8e-210 736.5 660 58.2
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 1.2e-209 733.8 677 57.5
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 1.2e-209 733.8 655 59.7
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 2.0e-209 733.0 691 57.5
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 2.6e-209 732.6 663 58.5
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 5.7e-209 731.5 682 57.9
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 5.7e-209 731.5 661 58.5
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 1.3e-208 730.3 658 57.4
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 1.7e-208 729.9 667 57.6
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 1.4e-207 726.9 598 63.2
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 3.1e-207 725.7 661 57.9
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 7.0e-207 724.5 597 63.7
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 2.7e-206 722.6 660 57.0
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 5.9e-206 721.5 661 57.9
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 1.0e-205 720.7 597 62.8
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 1.0e-205 720.7 595 62.2
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.1e-204 717.2 661 56.4
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.1e-204 717.2 661 56.4
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.1e-204 717.2 662 58.5
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 2.8e-203 712.6 599 63.1
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 3.6e-203 712.2 665 56.5
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 1.0e-202 710.7 664 56.2
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 6.8e-202 708.0 609 61.1
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 2.0e-201 706.4 669 57.7
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 2.6e-201 706.1 660 55.9
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 7.5e-201 704.5 657 57.2
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 1.3e-200 703.7 660 57.3
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 2.2e-200 703.0 657 58.0
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 3.7e-200 702.2 679 56.6
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 1.4e-199 700.3 649 58.7
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 1.2e-198 697.2 632 58.2
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 1.6e-198 696.8 669 54.9
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 2.0e-198 696.4 660 55.3
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 2.7e-198 696.0 660 56.4
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 7.8e-198 694.5 661 56.6
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 7.8e-198 694.5 662 57.3
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 1.0e-197 694.1 660 54.8
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.1e-196 690.6 698 54.0
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 1.1e-196 690.6 698 54.0
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 3.6e-195 685.6 687 55.3
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 1.4e-194 683.7 641 56.9
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 1.4e-194 683.7 658 55.9
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 1.2e-193 680.6 653 55.1
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 1.2e-193 680.6 597 61.0
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 1.2e-193 680.6 524 63.0
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.5e-193 680.2 597 61.0
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 2.6e-193 679.5 658 55.6
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 3.4e-193 679.1 736 51.8
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 3.4e-193 679.1 663 53.5
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 9.8e-193 677.6 658 54.1
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 1.3e-192 677.2 588 60.2
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 2.9e-192 676.0 664 53.6
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 4.9e-192 675.2 670 54.5
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 4.9e-192 675.2 596 60.1
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 8.3e-192 674.5 650 54.5
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 1.6e-190 670.2 640 56.4
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 4.6e-190 668.7 560 62.1
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 3.9e-189 665.6 554 61.2
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 9.9e-185 651.0 601 56.2
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 9.9e-185 651.0 666 54.8
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 1.1e-183 647.5 614 56.0
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 3.2e-183 646.0 633 57.0
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 3.2e-183 646.0 592 59.0
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 3.5e-182 642.5 674 53.4
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 6.8e-178 628.2 741 47.6
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 8.9e-178 627.9 493 64.7
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 5.8e-177 625.2 600 56.0
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 2.9e-176 622.9 654 52.0
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 8.4e-176 621.3 743 47.9
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 2.4e-175 619.8 661 51.6
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 6.0e-174 615.1 540 58.3
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 1.1e-172 610.9 669 51.3
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.5e-172 610.5 666 52.7
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 5.6e-172 608.6 664 51.5
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 8.1e-171 604.7 444 69.4
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.1e-170 604.4 667 52.2
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 7.6e-169 598.2 601 54.1
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.7e-168 597.0 673 50.2
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 1.1e-167 594.3 662 50.5
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 3.1e-162 576.2 660 50.0
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 4.0e-162 575.9 602 52.2
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 6.9e-162 575.1 660 48.5
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 1.2e-161 574.3 640 49.5
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 2.6e-161 573.2 600 52.7
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 7.6e-161 571.6 660 49.2
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 9.9e-161 571.2 600 52.5
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 9.9e-161 571.2 660 49.4
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.3e-160 570.9 659 49.6
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 1.7e-160 570.5 552 55.4
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.1e-159 567.8 622 51.4
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 1.1e-159 567.8 576 54.3
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 2.3e-157 560.1 566 53.7
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 6.7e-157 558.5 656 48.3
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 3.3e-156 556.2 656 48.0
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 3.3e-156 556.2 535 54.6
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 1.6e-155 553.9 622 48.7
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 2.4e-154 550.1 667 48.9
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 1.2e-153 547.7 661 47.7
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 2.9e-152 543.1 576 51.0
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 2.9e-152 543.1 656 47.6
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 8.4e-152 541.6 638 48.1
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 1.3e-149 534.3 702 45.2
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 2.4e-146 523.5 644 44.6
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 1.6e-139 500.7 621 46.4
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 4.6e-134 482.6 585 46.3
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 3.0e-117 426.8 644 45.2
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 6.3e-115 419.1 640 39.5
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 1.1e-114 418.3 648 39.5
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 6.6e-96 355.9 539 40.8
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 4.0e-93 346.7 268 63.8
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 5.7e-92 342.8 647 35.5
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 1.4e-90 338.2 541 39.0
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 3.5e-89 333.6 533 38.1
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 8.3e-83 312.4 253 61.3
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 4.1e-82 310.1 411 41.8
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 4.3e-79 300.1 318 51.6
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 4.9e-75 286.6 344 44.8
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 8.3e-75 285.8 214 66.8
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 5.4e-50 203.4 249 45.8
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 7.1e-50 203.0 125 77.6
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 1.1e-13 82.8 293 25.6
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 8.8e-08 63.2 63 57.1


User provided reference genes

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