Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 1.5e-34 149.1 78 100.0
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 2.6e-23 111.7 67 83.6
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 7.5e-23 110.2 68 82.4
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 9.8e-23 109.8 66 81.8
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.3e-22 109.4 66 81.8
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 1.3e-22 109.4 68 82.4
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.2e-22 108.6 68 82.4
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.2e-22 108.6 68 82.4
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 2.2e-22 108.6 68 80.9
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 2.8e-22 108.2 68 80.9
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 2.8e-22 108.2 68 82.4
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 3.7e-22 107.8 66 81.8
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 8.3e-22 106.7 74 75.7
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 8.3e-22 106.7 70 78.6
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 1.1e-21 106.3 66 80.3
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 1.1e-21 106.3 68 80.9
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.1e-21 106.3 68 79.4
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 1.1e-21 106.3 71 76.1
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 1.4e-21 105.9 68 79.4
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.4e-21 105.9 72 76.4
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 1.8e-21 105.5 64 82.8
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 2.4e-21 105.1 67 77.6
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 2.4e-21 105.1 67 79.1
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 2.4e-21 105.1 75 72.0
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 3.1e-21 104.8 66 78.8
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 3.1e-21 104.8 66 77.3
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 3.1e-21 104.8 68 77.9
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 3.1e-21 104.8 68 77.9
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 4.1e-21 104.4 69 72.5
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 4.1e-21 104.4 66 80.3
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 4.1e-21 104.4 74 74.3
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 5.4e-21 104.0 68 76.5
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 5.4e-21 104.0 68 79.4
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 5.4e-21 104.0 68 76.5
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 5.4e-21 104.0 68 76.5
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 5.4e-21 104.0 68 76.5
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 5.4e-21 104.0 68 76.5
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 5.4e-21 104.0 68 77.9
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 5.4e-21 104.0 68 76.5
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 5.4e-21 104.0 68 76.5
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 7.0e-21 103.6 68 76.5
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 7.0e-21 103.6 65 80.0
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 9.1e-21 103.2 68 76.5
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 1.2e-20 102.8 68 75.0
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 1.2e-20 102.8 68 76.5
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 1.2e-20 102.8 68 79.4
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 1.6e-20 102.4 66 74.2
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 1.6e-20 102.4 68 75.0
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 1.6e-20 102.4 64 78.1
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 1.6e-20 102.4 68 76.5
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 2.0e-20 102.1 68 77.9
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 2.7e-20 101.7 68 75.0
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 2.7e-20 101.7 62 80.6
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 2.7e-20 101.7 64 78.1
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 2.7e-20 101.7 64 76.6
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 3.5e-20 101.3 66 75.8
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 3.5e-20 101.3 68 73.5
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 3.5e-20 101.3 66 75.8
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 3.5e-20 101.3 68 75.0
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 3.5e-20 101.3 66 75.8
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 4.5e-20 100.9 68 77.9
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 4.5e-20 100.9 68 75.0
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 4.5e-20 100.9 68 75.0
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 4.5e-20 100.9 68 76.5
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 5.9e-20 100.5 68 75.0
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 5.9e-20 100.5 68 75.0
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 5.9e-20 100.5 67 76.1
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 7.7e-20 100.1 68 75.0
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.3e-19 99.4 68 72.1
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.3e-19 99.4 66 74.2
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 1.3e-19 99.4 66 74.2
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.7e-19 99.0 68 73.5
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 2.3e-19 98.6 68 72.1
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 2.3e-19 98.6 70 74.3
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 2.3e-19 98.6 65 75.4
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 2.9e-19 98.2 65 72.3
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 2.9e-19 98.2 68 70.6
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 3.8e-19 97.8 66 74.2
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 3.8e-19 97.8 68 72.1
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 5.0e-19 97.4 72 70.8
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 5.0e-19 97.4 67 71.6
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 5.0e-19 97.4 66 72.7
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 5.0e-19 97.4 66 75.8
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 6.6e-19 97.1 68 75.0
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 6.6e-19 97.1 66 72.7
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 1.1e-18 96.3 72 70.8
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 1.9e-18 95.5 72 69.4
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 3.3e-18 94.7 65 70.8
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 3.3e-18 94.7 65 70.8
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 3.3e-18 94.7 68 73.5
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 4.2e-18 94.4 68 70.6
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 5.5e-18 94.0 66 72.7
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 5.5e-18 94.0 66 72.7
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 9.5e-18 93.2 65 69.2
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 9.5e-18 93.2 65 69.2
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 1.6e-17 92.4 66 69.7
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 2.3e-16 88.6 57 75.4
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 8.9e-16 86.7 61 67.2
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 3.4e-15 84.7 62 66.1
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 5.7e-15 84.0 62 66.1
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 3.7e-14 81.3 63 61.9
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 7.0e-13 77.0 47 83.0
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 1.6e-12 75.9 62 59.7
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 2.7e-12 75.1 67 52.2
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 5.9e-12 73.9 47 78.7
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 3.9e-11 71.2 61 52.5
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 5.0e-11 70.9 61 50.8
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 5.0e-11 70.9 39 84.6
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 2.5e-10 68.6 40 80.0
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.1e-09 65.5 43 69.8
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 2.1e-09 65.5 48 68.8


User provided reference genes

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