Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 5.7e-133 477.6 248 100.0
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 1.1e-112 410.2 212 99.5
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 2.3e-97 359.4 217 83.9
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 2.5e-96 355.9 205 87.3
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 3.3e-96 355.5 205 87.3
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 7.2e-96 354.4 207 87.0
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 2.1e-95 352.8 205 87.3
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 2.8e-95 352.4 205 87.3
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 1.4e-94 350.1 205 86.3
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.3e-94 349.4 205 85.4
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 2.3e-94 349.4 205 85.4
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 3.0e-94 349.0 205 84.9
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 4.0e-94 348.6 205 84.9
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 5.2e-94 348.2 205 83.9
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 5.2e-94 348.2 205 83.9
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 6.8e-94 347.8 205 85.9
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 6.8e-94 347.8 210 84.3
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 8.9e-94 347.4 205 84.4
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 1.5e-93 346.7 205 85.4
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 2.6e-93 345.9 215 83.3
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 3.4e-93 345.5 204 84.3
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 5.7e-93 344.7 205 82.9
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 7.5e-93 344.4 205 83.9
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 7.5e-93 344.4 205 83.9
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 9.8e-93 344.0 205 84.4
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 9.8e-93 344.0 205 83.4
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 9.8e-93 344.0 205 84.9
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 1.3e-92 343.6 205 83.4
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 1.7e-92 343.2 215 78.1
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.7e-92 343.2 205 83.9
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 2.2e-92 342.8 214 81.3
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 2.2e-92 342.8 215 81.9
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 2.8e-92 342.4 205 82.0
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 3.7e-92 342.0 207 83.1
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 3.7e-92 342.0 205 82.9
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 3.7e-92 342.0 205 84.9
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 4.9e-92 341.7 205 81.5
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 4.9e-92 341.7 205 83.9
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 1.1e-91 340.5 205 83.4
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 1.1e-91 340.5 205 83.9
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 1.4e-91 340.1 205 83.9
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 2.4e-91 339.3 207 85.0
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 2.4e-91 339.3 206 83.5
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 3.1e-91 339.0 205 82.0
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 3.1e-91 339.0 205 82.4
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 4.1e-91 338.6 205 81.0
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 5.4e-91 338.2 205 81.5
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 5.4e-91 338.2 205 81.0
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 7.0e-91 337.8 205 82.0
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 7.0e-91 337.8 205 82.9
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 9.2e-91 337.4 205 82.9
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 9.2e-91 337.4 205 83.9
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 1.6e-90 336.7 210 82.4
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 2.7e-90 335.9 205 82.4
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 3.5e-90 335.5 205 81.5
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 3.5e-90 335.5 205 81.5
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 4.5e-90 335.1 205 81.0
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 1.0e-89 334.0 205 81.0
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 1.3e-89 333.6 205 80.5
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 1.3e-89 333.6 205 82.0
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 1.3e-89 333.6 205 80.5
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 3.8e-89 332.0 205 79.5
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 6.6e-89 331.3 205 80.5
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 1.5e-88 330.1 205 79.5
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 1.5e-88 330.1 205 80.0
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 1.9e-88 329.7 205 80.5
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 2.5e-88 329.3 211 78.2
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 2.5e-88 329.3 205 78.5
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 5.6e-88 328.2 205 79.5
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 5.6e-88 328.2 205 81.0
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 7.3e-88 327.8 205 79.0
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 1.2e-87 327.0 205 79.5
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 1.2e-87 327.0 205 79.0
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 1.6e-87 326.6 205 78.0
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 2.1e-87 326.2 205 79.0
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 2.1e-87 326.2 205 78.5
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 2.1e-87 326.2 205 81.5
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 6.1e-87 324.7 205 78.0
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.8e-86 323.2 184 88.0
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 2.3e-86 322.8 204 78.9
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 8.9e-86 320.9 183 87.4
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 1.2e-85 320.5 184 87.0
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 2.6e-85 319.3 205 75.6
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 2.6e-85 319.3 205 76.6
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 2.6e-85 319.3 205 76.6
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 2.6e-85 319.3 205 76.6
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 3.4e-85 318.9 206 79.1
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 5.8e-85 318.2 183 88.5
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 9.8e-85 317.4 205 75.1
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 3.7e-84 315.5 204 75.5
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 3.7e-84 315.5 204 75.5
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 4.9e-84 315.1 204 75.5
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 4.9e-84 315.1 204 75.5
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 1.9e-83 313.2 184 86.4
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 2.4e-83 312.8 205 75.6
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 3.9e-81 305.4 193 78.2
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 1.1e-80 303.9 196 79.1
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 3.3e-80 302.4 205 71.2
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 2.6e-77 292.7 205 70.7
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.9e-75 286.6 208 72.1
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 6.0e-74 281.6 207 67.6
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 2.3e-73 279.6 199 69.8
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 3.9e-73 278.9 189 76.2
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 3.3e-72 275.8 207 64.3
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 8.9e-70 267.7 159 84.3
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 1.3e-68 263.8 210 68.6
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 9.2e-67 257.7 207 61.8
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 4.3e-64 248.8 207 58.5
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.4e-62 243.8 183 65.0
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 5.8e-61 238.4 179 67.6
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 3.2e-59 232.6 147 80.3
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 5.4e-59 231.9 207 58.0
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 3.5e-58 229.2 205 62.4
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 1.1e-54 217.6 209 52.2
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 4.9e-52 208.8 205 57.1
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 8.7e-49 198.0 211 48.8
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.7e-42 176.4 208 41.3
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.6e-39 167.2 97 82.5
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 6.0e-34 148.7 123 64.2
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 4.2e-19 99.4 89 56.2
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 2.7e-18 96.7 60 75.0
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 3.0e-17 93.2 197 34.0
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 9.7e-16 88.2 117 43.6
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 6.3e-15 85.5 158 34.2
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 5.9e-13 79.0 92 52.2
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 1.3e-12 77.8 57 71.9
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 3.2e-11 73.2 159 34.6
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 4.2e-11 72.8 61 59.0
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 9.4e-11 71.6 46 76.1
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 2.6e-08 63.5 79 45.6
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 5.7e-08 62.4 51 62.7
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 1.3e-07 61.2 75 46.7


User provided reference genes

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