Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 8.1e-67 256.9 128 100.0
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 1.3e-53 213.0 128 80.5
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 3.0e-53 211.8 130 79.2
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 8.7e-53 210.3 128 79.7
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 8.7e-53 210.3 128 78.9
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.5e-52 209.5 129 80.6
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 4.3e-52 208.0 127 78.7
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 4.3e-52 208.0 128 78.1
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 4.3e-52 208.0 127 78.0
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 9.6e-52 206.8 131 78.6
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 9.6e-52 206.8 128 78.1
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 1.3e-51 206.5 128 78.1
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 1.6e-51 206.1 128 77.3
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.6e-51 206.1 128 77.3
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 3.7e-51 204.9 132 76.5
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 8.2e-51 203.8 129 78.3
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.6e-49 198.7 128 73.4
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.2e-48 195.7 122 77.9
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 2.9e-48 195.3 128 75.8
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 2.9e-48 195.3 128 76.6
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 5.0e-48 194.5 128 75.8
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 5.0e-48 194.5 128 73.4
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 6.5e-48 194.1 128 75.0
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 6.5e-48 194.1 128 75.8
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 8.4e-48 193.7 131 76.3
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 1.1e-47 193.4 127 77.2
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 2.5e-47 192.2 128 75.8
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 3.2e-47 191.8 122 77.0
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 4.2e-47 191.4 116 81.0
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 4.2e-47 191.4 128 74.2
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 7.1e-47 190.7 122 76.2
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.2e-46 189.9 128 72.7
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.6e-46 189.5 128 72.7
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.6e-46 189.5 131 71.8
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 1.6e-46 189.5 130 75.4
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 2.1e-46 189.1 130 74.6
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 2.7e-46 188.7 130 74.6
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 2.7e-46 188.7 128 74.2
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 3.5e-46 188.3 129 73.6
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 4.6e-46 188.0 130 73.8
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 6.1e-46 187.6 128 72.7
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 7.9e-46 187.2 128 74.2
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 7.9e-46 187.2 130 74.6
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 7.9e-46 187.2 128 71.9
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 1.3e-45 186.4 129 72.9
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.8e-45 186.0 129 72.9
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 1.8e-45 186.0 131 73.3
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 1.8e-45 186.0 128 71.9
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 3.0e-45 185.3 131 72.5
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 5.1e-45 184.5 116 78.4
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 8.7e-45 183.7 128 71.9
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 8.7e-45 183.7 128 75.0
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.1e-44 183.3 134 72.4
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.5e-44 183.0 128 72.7
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 2.5e-44 182.2 128 72.7
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 2.5e-44 182.2 118 76.3
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 3.3e-44 181.8 128 69.5
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 3.3e-44 181.8 129 72.9
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 4.3e-44 181.4 128 71.1
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 1.3e-43 179.9 124 70.2
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 1.3e-43 179.9 124 70.2
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 2.2e-43 179.1 128 72.7
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 2.2e-43 179.1 128 72.7
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 2.2e-43 179.1 118 77.1
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.2e-43 179.1 128 71.1
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 2.2e-43 179.1 130 72.3
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 2.2e-43 179.1 128 67.2
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 2.8e-43 178.7 130 70.8
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 3.7e-43 178.3 129 71.3
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 4.8e-43 177.9 134 70.9
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 6.3e-43 177.6 130 70.8
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 8.2e-43 177.2 132 69.7
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 8.2e-43 177.2 128 71.1
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 1.1e-42 176.8 132 68.9
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.1e-42 176.8 108 76.9
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.4e-42 176.4 132 72.0
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.8e-42 176.0 108 76.9
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 2.4e-42 175.6 130 72.3
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 2.4e-42 175.6 130 72.3
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 2.4e-42 175.6 126 70.6
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 3.1e-42 175.3 133 68.4
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 3.1e-42 175.3 133 68.4
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.3e-42 174.5 129 72.1
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.3e-42 174.5 129 72.1
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 5.3e-42 174.5 129 72.1
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 1.2e-41 173.3 128 71.1
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 2.0e-41 172.6 131 67.9
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 2.0e-41 172.6 131 67.9
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 2.0e-41 172.6 128 68.0
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 2.6e-41 172.2 128 68.0
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 3.4e-41 171.8 129 69.8
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 3.4e-41 171.8 122 72.1
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 4.5e-41 171.4 133 69.2
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 4.5e-41 171.4 115 74.8
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 5.9e-41 171.0 122 72.1
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 7.7e-41 170.6 132 66.7
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 7.7e-41 170.6 132 66.7
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 7.7e-41 170.6 132 66.7
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.0e-40 170.2 132 69.7
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 1.0e-40 170.2 128 67.2
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.0e-40 170.2 115 72.2
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.7e-40 169.5 128 68.0
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 6.5e-40 167.5 132 68.2
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 5.5e-39 164.5 128 66.4
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 9.4e-39 163.7 128 65.6
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.2e-38 163.3 129 67.4
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 2.1e-38 162.5 116 71.6
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.1e-38 162.5 118 72.0
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 2.7e-38 162.2 103 78.6
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 3.6e-38 161.8 101 78.2
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 7.9e-38 160.6 96 81.2
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 1.0e-37 160.2 110 72.7
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 1.8e-37 159.5 128 67.2
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 2.3e-37 159.1 128 67.2
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 3.9e-37 158.3 128 66.4
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 3.9e-37 158.3 96 78.1
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 8.8e-37 157.1 131 64.1
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 1.5e-36 156.4 115 71.3
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 2.5e-36 155.6 110 70.9
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 3.3e-36 155.2 110 70.9
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 5.7e-36 154.5 119 68.9
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 5.7e-36 154.5 102 75.5
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.3e-35 153.3 127 63.0
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.3e-35 153.3 127 63.0
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 3.7e-35 151.8 110 69.1
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 8.2e-35 150.6 114 71.9
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 1.8e-34 149.4 127 60.6
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 1.8e-34 149.4 108 65.7
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 3.1e-34 148.7 129 62.8
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 2.0e-33 146.0 115 67.8
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 4.5e-33 144.8 89 79.8
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 1.0e-32 143.7 114 67.5
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 2.5e-31 139.0 87 77.0
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.2e-31 138.7 93 68.8
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 9.4e-31 137.1 94 73.4
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 2.3e-29 132.5 75 84.0
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 3.0e-29 132.1 75 84.0
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 5.1e-29 131.3 117 62.4
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 6.7e-29 131.0 128 56.2
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 3.3e-28 128.6 83 73.5
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.4e-26 122.5 93 65.6
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 4.5e-25 118.2 116 57.8
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.5e-23 113.2 104 60.6
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.9e-23 112.8 78 74.4
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 2.5e-23 112.5 122 50.8
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 1.4e-21 106.7 115 56.5
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 6.7e-21 104.4 83 67.5
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 9.7e-20 100.5 71 67.6
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 2.8e-19 99.0 85 61.2
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 2.4e-18 95.9 78 64.1
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 1.3e-16 90.1 75 58.7
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.6e-14 83.2 45 88.9
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.6e-14 82.0 69 62.3
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 8.0e-14 80.9 57 66.7
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 7.7e-09 64.3 55 60.0


User provided reference genes

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