Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g05900 Coffea canephora HOM05D006230 ORTHO05D007598 1.9e-78 295.8 154 100.0
Oeu023312.1 Olea europaea HOM05D006230 ORTHO05D007598 6.0e-48 194.5 152 71.7
AUR62015538 Chenopodium quinoa HOM05D006230 ORTHO05D007598 2.5e-46 189.1 148 67.6
Nitab4.5_0001425g0090 Nicotiana tabacum HOM05D006230 ORTHO05D007598 4.3e-46 188.3 121 79.3
TWI73G0434 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 5.6e-46 188.0 119 77.3
Dinv27088 Davidia involucrata HOM05D006230 ORTHO05D007598 1.6e-45 186.4 154 66.9
CSS0007771 Camellia sinensis var. sinensis HOM05D006230 ORTHO05D007598 2.1e-45 186.0 159 65.4
COL.COLO4_15930 Corchorus olitorius HOM05D006230 ORTHO05D007598 3.6e-45 185.3 142 70.4
Nitab4.5_0006936g0040 Nicotiana tabacum HOM05D006230 ORTHO05D007598 4.7e-45 184.9 155 65.8
EL10Ac3g04971 Beta vulgaris HOM05D006230 ORTHO05D007598 6.2e-45 184.5 152 63.8
Gohir.A02G041200 Gossypium hirsutum HOM05D006230 ORTHO05D007598 2.3e-44 182.6 143 69.2
Hma1.2p1_0112F.1_g054490 Hydrangea macrophylla HOM05D006230 ORTHO05D007598 4.0e-44 181.8 151 65.6
Sed0003219 Sechium edule HOM05D006230 ORTHO05D007598 5.2e-44 181.4 146 67.8
Atru.chr4.1981 Acer truncatum HOM05D006230 ORTHO05D007598 6.8e-44 181.0 149 65.8
Gohir.D02G047000 Gossypium hirsutum HOM05D006230 ORTHO05D007598 8.9e-44 180.6 143 68.5
Gorai.005G052000 Gossypium raimondii HOM05D006230 ORTHO05D007598 1.5e-43 179.9 143 68.5
Actinidia20827 Actinidia chinensis HOM05D006230 ORTHO05D007598 2.0e-43 179.5 119 77.3
Ciclev10006136m.g Citrus clementina HOM05D006230 ORTHO05D007598 2.6e-43 179.1 156 67.3
Migut.G00496 Erythranthe guttata HOM05D006230 ORTHO05D007598 5.8e-43 177.9 151 62.9
Sabra10G0038500 Salix brachista HOM05D006230 ORTHO05D007598 5.8e-43 177.9 157 64.3
Sc13g0005900 Simmondsia chinensis HOM05D006230 ORTHO05D007598 5.8e-43 177.9 128 74.2
CAN.G220.45 Capsicum annuum HOM05D006230 ORTHO05D007598 9.8e-43 177.2 142 69.0
Solyc09g090410.3 Solanum lycopersicum HOM05D006230 ORTHO05D007598 1.3e-42 176.8 154 67.5
Sopen09g033320 Solanum pennellii HOM05D006230 ORTHO05D007598 1.3e-42 176.8 154 65.6
Cfa014753 Carpinus fangiana HOM05D006230 ORTHO05D007598 1.7e-42 176.4 120 78.3
Oeu059405.1 Olea europaea HOM05D006230 ORTHO05D007598 1.7e-42 176.4 188 57.4
PGSC0003DMG400017161 Solanum tuberosum HOM05D006230 ORTHO05D007598 1.7e-42 176.4 154 66.2
Actinidia35808 Actinidia chinensis HOM05D006230 ORTHO05D007598 2.2e-42 176.0 139 68.3
TWI53G0221 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 2.2e-42 176.0 121 72.7
Gohir.A10G109400 Gossypium hirsutum HOM05D006230 ORTHO05D007598 2.9e-42 175.6 117 76.9
Potri.010G068500 Populus trichocarpa HOM05D006230 ORTHO05D007598 4.9e-42 174.9 148 66.2
Thecc.04G260000 Theobroma cacao HOM05D006230 ORTHO05D007598 4.9e-42 174.9 141 66.7
Peaxi162Scf00602g00421 Petunia axillaris HOM05D006230 ORTHO05D007598 6.4e-42 174.5 154 65.6
GSVIVG01027870001 Vitis vinifera HOM05D006230 ORTHO05D007598 1.1e-41 173.7 121 73.6
PGR004G2031 Punica granatum HOM05D006230 ORTHO05D007598 1.4e-41 173.3 138 65.9
CsaV3_3G011880 Cucumis sativus L. HOM05D006230 ORTHO05D007598 1.9e-41 172.9 119 73.1
Manes.15G043800 Manihot esculenta HOM05D006230 ORTHO05D007598 3.2e-41 172.2 128 73.4
Duzib151G0304 Durio zibethinus HOM05D006230 ORTHO05D007598 5.4e-41 171.4 158 62.0
Duzib212G0996 Durio zibethinus HOM05D006230 ORTHO05D007598 5.4e-41 171.4 145 64.8
Aqoxy2G03714 Aquilegia oxysepala HOM05D006230 ORTHO05D007598 9.2e-41 170.6 121 75.2
QL06p019992 Quercus lobata HOM05D006230 ORTHO05D007598 9.2e-41 170.6 119 74.8
Haze_11428 Corylus avellana HOM05D006230 ORTHO05D007598 1.2e-40 170.2 153 65.4
MELO3C006400.2 Cucumis melo HOM05D006230 ORTHO05D007598 1.2e-40 170.2 142 65.5
Lsat_1_v5_gn_2_39681 Lactuca sativa HOM05D006230 ORTHO05D007598 1.2e-40 170.2 149 65.8
HanXRQChr14g0434851 Helianthus annuus HOM05D006230 ORTHO05D007598 1.6e-40 169.9 130 72.3
Gorai.011G177300 Gossypium raimondii HOM05D006230 ORTHO05D007598 3.5e-40 168.7 117 75.2
Potri.008G169800 Populus trichocarpa HOM05D006230 ORTHO05D007598 3.5e-40 168.7 120 72.5
Medtr1g041320 Medicago truncatula HOM05D006230 ORTHO05D007598 6.0e-40 167.9 151 64.2
Phvul.007G278700 Phaseolus vulgaris HOM05D006230 ORTHO05D007598 6.0e-40 167.9 147 65.3
CANSAT78G0232 Cannabis sativa HOM05D006230 ORTHO05D007598 7.8e-40 167.5 117 72.6
CANSAT78G0887 Cannabis sativa HOM05D006230 ORTHO05D007598 7.8e-40 167.5 117 72.6
ClCG05G004160 Citrullus lanatus HOM05D006230 ORTHO05D007598 7.8e-40 167.5 139 66.9
Gohir.D10G157800 Gossypium hirsutum HOM05D006230 ORTHO05D007598 7.8e-40 167.5 117 75.2
PSO017G6779 Papaver somniferum HOM05D006230 ORTHO05D007598 7.8e-40 167.5 121 71.9
THA.LOC104801077 Tarenaya hassleriana HOM05D006230 ORTHO05D007598 7.8e-40 167.5 120 73.3
Glyma.10G002600 Glycine max HOM05D006230 ORTHO05D007598 1.0e-39 167.2 120 75.0
Psat6g103800 Pisum sativum HOM05D006230 ORTHO05D007598 1.0e-39 167.2 137 65.0
Sed0015876 Sechium edule HOM05D006230 ORTHO05D007598 1.3e-39 166.8 146 63.0
AL4G29120 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 1.7e-39 166.4 131 67.2
Cpa.g.sc44.25 Carica papaya HOM05D006230 ORTHO05D007598 1.7e-39 166.4 119 74.8
Lalb_Chr01g0020881 Lupinus albus HOM05D006230 ORTHO05D007598 1.7e-39 166.4 130 64.6
unitig_32.g10851 Utricularia gibba HOM05D006230 ORTHO05D007598 1.7e-39 166.4 120 74.2
CARHR127460 Cardamine hirsuta HOM05D006230 ORTHO05D007598 2.3e-39 166.0 127 68.5
Thhalv10017390m.g Eutrema salsugineum HOM05D006230 ORTHO05D007598 2.3e-39 166.0 123 70.7
PSO063G4949 Papaver somniferum HOM05D006230 ORTHO05D007598 2.3e-39 166.0 121 71.1
Sp4g15790 Schrenkiella parvula HOM05D006230 ORTHO05D007598 3.9e-39 165.2 127 68.5
AT2G33450 Arabidopsis thaliana HOM05D006230 ORTHO05D007598 5.1e-39 164.9 119 71.4
Carub.0004s1508 Capsella rubella HOM05D006230 ORTHO05D007598 5.1e-39 164.9 127 68.5
CiPaw.02G108600 Carya illinoinensis HOM05D006230 ORTHO05D007598 5.1e-39 164.9 124 73.4
Lalb_Chr03g0037521 Lupinus albus HOM05D006230 ORTHO05D007598 5.1e-39 164.9 118 70.3
ECA234G3973 Erigeron canadensis HOM05D006230 ORTHO05D007598 6.6e-39 164.5 121 71.1
Eucgr.H02995 Eucalyptus grandis HOM05D006230 ORTHO05D007598 6.6e-39 164.5 120 70.0
Sp1g03290 Schrenkiella parvula HOM05D006230 ORTHO05D007598 8.6e-39 164.1 127 67.7
TPR.G32792 Trifolium pratense HOM05D006230 ORTHO05D007598 1.5e-38 163.3 149 60.4
TAR636G3560 Trochodendron aralioides HOM05D006230 ORTHO05D007598 1.5e-38 163.3 158 60.8
SalBow3G4585 Salvia bowleyana HOM05D006230 ORTHO05D007598 1.9e-38 162.9 167 54.5
Ca_05177_v3 Cicer arietinum L. HOM05D006230 ORTHO05D007598 2.5e-38 162.5 143 62.9
BolC4t27775H Brassica oleracea HOM05D006230 ORTHO05D007598 3.3e-38 162.2 129 66.7
Carub.0001s0365 Capsella rubella HOM05D006230 ORTHO05D007598 3.3e-38 162.2 120 69.2
AL1G14110 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 4.3e-38 161.8 120 70.0
BraA04t18078Z Brassica rapa HOM05D006230 ORTHO05D007598 4.3e-38 161.8 129 66.7
Prupe.1G045100 Prunus persica HOM05D006230 ORTHO05D007598 4.3e-38 161.8 118 72.0
Aa31LG5G3840 Aethionema arabicum HOM05D006230 ORTHO05D007598 5.6e-38 161.4 120 71.7
Lj6g0026311 Lotus japonicus HOM05D006230 ORTHO05D007598 5.6e-38 161.4 155 59.4
ATR0736G074 Amborella trichopoda HOM05D006230 ORTHO05D007598 9.5e-38 160.6 119 72.3
BcaB02g10562 Brassica carinata HOM05D006230 ORTHO05D007598 1.6e-37 159.8 124 70.2
DCAR_002306 Daucus carota HOM05D006230 ORTHO05D007598 2.1e-37 159.5 156 57.7
MD16G1223800 Malus domestica HOM05D006230 ORTHO05D007598 2.1e-37 159.5 118 70.3
C04p62980 Brassica napus HOM05D006230 ORTHO05D007598 2.8e-37 159.1 129 65.9
SGA_v2.0_scaffold67G22731 Striga asiatica HOM05D006230 ORTHO05D007598 2.8e-37 159.1 151 58.9
A04p25750 Brassica napus HOM05D006230 ORTHO05D007598 3.6e-37 158.7 134 65.7
FvH4_4g04200 Fragaria vesca HOM05D006230 ORTHO05D007598 3.6e-37 158.7 118 70.3
BcaB06g28689 Brassica carinata HOM05D006230 ORTHO05D007598 6.2e-37 157.9 147 59.9
FAN12G2171 Fragaria x ananassa HOM05D006230 ORTHO05D007598 1.4e-36 156.8 152 59.9
RcHm_v2.0_Chr4g0394691 Rosa chinensis HOM05D006230 ORTHO05D007598 1.4e-36 156.8 152 59.2
vmacro08530 Vaccinium macrocarpon HOM05D006230 ORTHO05D007598 2.3e-36 156.0 158 57.6
CDE05G0971 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 3.1e-36 155.6 119 68.1
BcaC02g11431 Brassica carinata HOM05D006230 ORTHO05D007598 4.0e-36 155.2 128 67.2
C04p15650 Brassica napus HOM05D006230 ORTHO05D007598 4.0e-36 155.2 128 67.2
CDE11G0022 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 8.9e-36 154.1 119 68.1
Hund11917 Selenicereus undatus HOM05D006230 ORTHO05D007598 1.2e-35 153.7 119 67.2
FAN17G1889 Fragaria x ananassa HOM05D006230 ORTHO05D007598 2.6e-35 152.5 152 57.9
MD13G1218400 Malus domestica HOM05D006230 ORTHO05D007598 2.6e-35 152.5 114 70.2
Zm00001eb222850 Zea mays HOM05D006230 ORTHO05D007598 3.4e-35 152.1 150 60.7
BcaC02g07821 Brassica carinata HOM05D006230 ORTHO05D007598 4.4e-35 151.8 129 64.3
Os05g0101400 Oryza sativa ssp. japonica HOM05D006230 ORTHO05D007598 1.4e-33 146.7 135 59.3
BolC4t23134H Brassica oleracea HOM05D006230 ORTHO05D007598 1.9e-33 146.4 129 65.1
Zm00001eb047510 Zea mays HOM05D006230 ORTHO05D007598 7.1e-33 144.4 120 63.3
HPP92_012809 Vanilla planifolia HOM05D006230 ORTHO05D007598 2.7e-32 142.5 118 64.4
arahy.Tifrunner.gnm1.ann1.ADZ0J4 Arachis hypogaea HOM05D006230 ORTHO05D007598 2.3e-31 139.4 78 87.2
RcHm_v2.0_Chr4g0394651 Rosa chinensis HOM05D006230 ORTHO05D007598 3.0e-31 139.0 124 58.9
Thecc.10G124200 Theobroma cacao HOM05D006230 ORTHO05D007598 8.6e-31 137.5 105 69.5
SEGI_13554 Sequoiadendron giganteum HOM05D006230 ORTHO05D007598 1.4e-28 130.2 156 53.2
Prupe.8G083300 Prunus persica HOM05D006230 ORTHO05D007598 6.8e-28 127.9 82 78.0
Ah.04g155450 Amaranthus hybridus HOM05D000071 ORTHO05D007598 1.5e-27 126.7 118 61.0
MD00G1118000 Malus domestica HOM05D006230 ORTHO05D007598 3.8e-26 122.1 75 74.7
Rhsim04G0174900 Rhododendron simsii HOM05D006230 ORTHO05D007598 4.9e-26 121.7 79 75.9
Pp3c6_1140 Physcomitrium patens HOM05D006230 ORTHO05D007598 6.4e-26 121.3 109 58.7
Pp3c5_28500 Physcomitrium patens HOM05D006230 ORTHO05D007598 1.2e-24 117.1 109 60.6
AagrBONN_evm.TU.Sc2ySwM_228.3795 Anthoceros agrestis HOM05D006230 ORTHO05D007598 2.1e-24 116.3 88 64.8
Duzib052G0467 Durio zibethinus HOM05D006230 ORTHO05D007598 9.6e-22 107.5 113 53.1
Mapoly0087s0077 Marchantia polymorpha HOM05D006230 ORTHO05D007598 2.1e-21 106.3 112 50.0
SMO131G0001 Selaginella moellendorffii HOM05D006230 ORTHO05D007598 1.5e-19 100.1 75 62.7
CBR_g23072 Chara braunii HOM05D006230 ORTHO05D007598 2.2e-18 96.3 75 61.3
Cre06.g265800 Chlamydomonas reinhardtii HOM05D006230 ORTHO05D007598 1.3e-15 87.0 97 49.5
MCO07G061 Micromonas commoda HOM05D006230 ORTHO05D007598 1.3e-15 87.0 112 44.6
VMungo0684G0001 Vigna mungo HOM05D006230 ORTHO05D007598 1.0e-07 60.8 65 47.7
Nn3g19733 Nelumbo nucifera HOM05D006230 ORTHO05D007598 3.0e-07 59.3 36 83.3


User provided reference genes

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