Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g05890 Coffea canephora HOM05D003760 ORTHO05D004672 2.1e-58 228.8 115 100.0
CAN.G220.44 Capsicum annuum HOM05D003760 ORTHO05D004672 5.7e-27 124.4 122 61.5
PSO384G0478 Papaver somniferum HOM05D003760 ORTHO05D004672 3.7e-26 121.7 135 53.3
PSO339G5967 Papaver somniferum HOM05D003760 ORTHO05D004672 4.8e-26 121.3 135 53.3
Sopen09g033310 Solanum pennellii HOM05D003760 ORTHO05D004672 4.8e-26 121.3 132 54.5
PGSC0003DMG400017207 Solanum tuberosum HOM05D003760 ORTHO05D004672 4.8e-26 121.3 132 55.3
Nitab4.5_0006936g0020 Nicotiana tabacum HOM05D003760 ORTHO05D004672 1.4e-25 119.8 133 53.4
Peaxi162Scf00602g00420 Petunia axillaris HOM05D003760 ORTHO05D004672 1.4e-25 119.8 132 53.8
Nitab4.5_0001425g0120 Nicotiana tabacum HOM05D003760 ORTHO05D004672 1.8e-25 119.4 133 53.4
COL.COLO4_21460 Corchorus olitorius HOM05D003760 ORTHO05D004672 2.4e-25 119.0 130 54.6
Sabra03G0148000 Salix brachista HOM05D003760 ORTHO05D004672 2.4e-25 119.0 135 53.3
HPP92_016595 Vanilla planifolia HOM05D003760 ORTHO05D004672 3.1e-25 118.6 129 53.5
arahy.Tifrunner.gnm1.ann1.88C8QI Arachis hypogaea HOM05D003760 ORTHO05D004672 4.1e-25 118.2 131 52.7
arahy.Tifrunner.gnm1.ann1.R8F3HD Arachis hypogaea HOM05D003760 ORTHO05D004672 4.1e-25 118.2 131 52.7
CSS0016471 Camellia sinensis var. sinensis HOM05D003760 ORTHO05D004672 4.1e-25 118.2 129 53.5
CSS0033000 Camellia sinensis var. sinensis HOM05D003760 ORTHO05D004672 4.1e-25 118.2 128 54.7
CiPaw.14G006600 Carya illinoinensis HOM05D003760 ORTHO05D004672 4.1e-25 118.2 128 55.5
Eucgr.G03244 Eucalyptus grandis HOM05D003760 ORTHO05D004672 4.1e-25 118.2 136 54.4
MSTRG.16994 Avicennia marina HOM05D003760 ORTHO05D004672 5.3e-25 117.9 128 55.5
Actinidia19460 Actinidia chinensis HOM05D003760 ORTHO05D004672 6.9e-25 117.5 136 52.9
HanXRQChr12g0382881 Helianthus annuus HOM05D003760 ORTHO05D004672 6.9e-25 117.5 130 55.4
THA.LOC104818980 Tarenaya hassleriana HOM05D003760 ORTHO05D004672 6.9e-25 117.5 130 56.2
Actinidia39916 Actinidia chinensis HOM05D003760 ORTHO05D004672 9.0e-25 117.1 129 54.3
MSTRG.20523 Avicennia marina HOM05D003760 ORTHO05D004672 9.0e-25 117.1 136 52.2
ECA233G5140 Erigeron canadensis HOM05D003760 ORTHO05D004672 9.0e-25 117.1 136 52.9
Glyma.09G185000 Glycine max HOM05D003760 ORTHO05D004672 9.0e-25 117.1 127 53.5
Lsat_1_v5_gn_5_36241 Lactuca sativa HOM05D003760 ORTHO05D004672 9.0e-25 117.1 130 55.4
Nitab4.5_0000320g0110 Nicotiana tabacum HOM05D003760 ORTHO05D004672 9.0e-25 117.1 130 52.3
QL06p019987 Quercus lobata HOM05D003760 ORTHO05D004672 9.0e-25 117.1 135 54.1
AUR62042161 Chenopodium quinoa HOM05D003760 ORTHO05D004672 1.2e-24 116.7 130 55.4
Cc02_g29710 Coffea canephora HOM05D003760 ORTHO05D004672 1.2e-24 116.7 136 52.9
Lsat_1_v5_gn_8_34020 Lactuca sativa HOM05D003760 ORTHO05D004672 1.2e-24 116.7 128 53.9
Lj3g0013265 Lotus japonicus HOM05D003760 ORTHO05D004672 1.2e-24 116.7 127 52.8
Potri.001G026100 Populus trichocarpa HOM05D003760 ORTHO05D004672 1.2e-24 116.7 130 55.4
SGA_v2.0_scaffold124G33635 Striga asiatica HOM05D003760 ORTHO05D004672 1.2e-24 116.7 135 52.6
Aqoxy2G00338 Aquilegia oxysepala HOM05D003760 ORTHO05D004672 1.5e-24 116.3 130 54.6
Lj9A655T38 Lonicera japonica HOM05D003760 ORTHO05D004672 1.5e-24 116.3 130 54.6
AUR62033839 Chenopodium quinoa HOM05D003760 ORTHO05D004672 2.0e-24 115.9 130 54.6
Ciclev10001295m.g Citrus clementina HOM05D003760 ORTHO05D004672 2.0e-24 115.9 130 55.4
Ciclev10005415m.g Citrus clementina HOM05D003760 ORTHO05D004672 2.0e-24 115.9 130 55.4
Nitab4.5_0001681g0070 Nicotiana tabacum HOM05D003760 ORTHO05D004672 2.0e-24 115.9 129 52.7
TWI63G0088 Tripterygium wilfordii HOM05D003760 ORTHO05D004672 2.0e-24 115.9 136 53.7
vmacro15463 Vaccinium macrocarpon HOM05D003760 ORTHO05D004672 2.0e-24 115.9 129 53.5
EL10Ac1g02286 Beta vulgaris HOM05D003760 ORTHO05D004672 2.6e-24 115.5 136 52.2
Dinv32036 Davidia involucrata HOM05D003760 ORTHO05D004672 2.6e-24 115.5 130 54.6
FvH4_7g02780 Fragaria vesca HOM05D003760 ORTHO05D004672 2.6e-24 115.5 130 54.6
FAN03G0077 Fragaria x ananassa HOM05D003760 ORTHO05D004672 2.6e-24 115.5 130 54.6
FAN06G0531 Fragaria x ananassa HOM05D003760 ORTHO05D004672 2.6e-24 115.5 130 54.6
Glyma.07G090900 Glycine max HOM05D003760 ORTHO05D004672 2.6e-24 115.5 127 52.8
Gohir.A05G281000 Gossypium hirsutum HOM05D003760 ORTHO05D004672 2.6e-24 115.5 130 54.6
Gohir.D05G283000 Gossypium hirsutum HOM05D003760 ORTHO05D004672 2.6e-24 115.5 130 54.6
Gorai.009G296500 Gossypium raimondii HOM05D003760 ORTHO05D004672 2.6e-24 115.5 130 54.6
MD02G1290200 Malus domestica HOM05D003760 ORTHO05D004672 2.6e-24 115.5 136 51.5
Oeu015685.1 Olea europaea HOM05D003760 ORTHO05D004672 2.6e-24 115.5 129 52.7
Phvul.004G157800 Phaseolus vulgaris HOM05D003760 ORTHO05D004672 2.6e-24 115.5 127 52.8
PGR031G0954 Punica granatum HOM05D003760 ORTHO05D004672 2.6e-24 115.5 135 52.6
RcHm_v2.0_Chr1g0322021 Rosa chinensis HOM05D003760 ORTHO05D004672 2.6e-24 115.5 130 54.6
SEGI_24692 Sequoiadendron giganteum HOM05D003760 ORTHO05D004672 2.6e-24 115.5 128 54.7
VMungo0464G1704 Vigna mungo HOM05D003760 ORTHO05D004672 2.6e-24 115.5 127 52.8
Atru.chr12.1379 Acer truncatum HOM05D003760 ORTHO05D004672 3.4e-24 115.2 130 54.6
AL3G18600 Arabidopsis lyrata HOM05D003760 ORTHO05D004672 3.4e-24 115.2 127 52.8
Migut.B01218 Erythranthe guttata HOM05D003760 ORTHO05D004672 3.4e-24 115.2 136 52.9
FAN01G2043 Fragaria x ananassa HOM05D003760 ORTHO05D004672 3.4e-24 115.2 129 53.5
Medtr5g031790 Medicago truncatula HOM05D003760 ORTHO05D004672 3.4e-24 115.2 126 54.0
Potri.003G199301 Populus trichocarpa HOM05D003760 ORTHO05D004672 3.4e-24 115.2 130 54.6
Potri.T126106 Populus trichocarpa HOM05D003760 ORTHO05D004672 3.4e-24 115.2 130 54.6
QL04p014453 Quercus lobata HOM05D003760 ORTHO05D004672 3.4e-24 115.2 129 54.3
QL04p014818 Quercus lobata HOM05D003760 ORTHO05D004672 3.4e-24 115.2 129 54.3
SEGI_21043 Sequoiadendron giganteum HOM05D003760 ORTHO05D004672 3.4e-24 115.2 127 55.1
Thecc.10G166200 Theobroma cacao HOM05D003760 ORTHO05D004672 3.4e-24 115.2 130 55.4
Cpa.g.sc223.12 Carica papaya HOM05D003760 ORTHO05D004672 4.5e-24 114.8 130 54.6
Duzib114G0596 Durio zibethinus HOM05D003760 ORTHO05D004672 4.5e-24 114.8 129 53.5
Glyma.11G154300 Glycine max HOM05D003760 ORTHO05D004672 4.5e-24 114.8 127 52.8
MBI13_g01615_MAGBIO Magnolia biondii HOM05D003760 ORTHO05D004672 4.5e-24 114.8 130 54.6
Manes.04G165800 Manihot esculenta HOM05D003760 ORTHO05D004672 4.5e-24 114.8 129 53.5
TAR636G0376 Trochodendron aralioides HOM05D003760 ORTHO05D004672 4.5e-24 114.8 130 54.6
GSVIVG01000658001 Vitis vinifera HOM05D003760 ORTHO05D004672 4.5e-24 114.8 130 54.6
Zm00001eb223560 Zea mays HOM05D003760 ORTHO05D004672 4.5e-24 114.8 129 53.5
ATR0075G007 Amborella trichopoda HOM05D003760 ORTHO05D004672 5.9e-24 114.4 130 53.8
AT3G07300 Arabidopsis thaliana HOM05D003760 ORTHO05D004672 5.9e-24 114.4 127 52.8
AUR62035743 Chenopodium quinoa HOM05D003760 ORTHO05D004672 5.9e-24 114.4 130 53.8
Ca_02468_v3 Cicer arietinum L. HOM05D003760 ORTHO05D004672 5.9e-24 114.4 127 52.0
DCAR_022349 Daucus carota HOM05D003760 ORTHO05D004672 5.9e-24 114.4 130 54.6
FAN10G4281 Fragaria x ananassa HOM05D003760 ORTHO05D004672 5.9e-24 114.4 130 53.8
FAN17G2831 Fragaria x ananassa HOM05D003760 ORTHO05D004672 5.9e-24 114.4 136 52.2
Hma1.2p1_0121F.1_g057510 Hydrangea macrophylla HOM05D003760 ORTHO05D004672 5.9e-24 114.4 130 53.1
Hma1.2p1_1396F.1_g280580 Hydrangea macrophylla HOM05D003760 ORTHO05D004672 5.9e-24 114.4 130 53.1
Lalb_Chr08g0234711 Lupinus albus HOM05D003760 ORTHO05D004672 5.9e-24 114.4 127 52.0
Peaxi162Scf01732g00023 Petunia axillaris HOM05D003760 ORTHO05D004672 5.9e-24 114.4 129 51.9
Prupe.2G032300 Prunus persica HOM05D003760 ORTHO05D004672 5.9e-24 114.4 136 50.7
Hund21541 Selenicereus undatus HOM05D003760 ORTHO05D004672 5.9e-24 114.4 128 54.7
Cfa010888 Carpinus fangiana HOM05D003760 ORTHO05D004672 7.6e-24 114.0 129 52.7
CiPaw.13G012300 Carya illinoinensis HOM05D003760 ORTHO05D004672 1.0e-23 113.6 130 53.1
RcHm_v2.0_Chr4g0394571 Rosa chinensis HOM05D003760 ORTHO05D004672 1.0e-23 113.6 136 51.5
MD13G1218200 Malus domestica HOM05D003760 ORTHO05D004672 1.3e-23 113.2 135 50.4
Sc10g0004370 Simmondsia chinensis HOM05D003760 ORTHO05D004672 1.3e-23 113.2 130 53.8
Zm00001eb048720 Zea mays HOM05D003760 ORTHO05D004672 1.3e-23 113.2 129 51.9
Carub.0003s0684 Capsella rubella HOM05D003760 ORTHO05D004672 1.7e-23 112.8 127 52.0
Cfa006289 Carpinus fangiana HOM05D003760 ORTHO05D004672 1.7e-23 112.8 129 51.9
Haze_03069 Corylus avellana HOM05D003760 ORTHO05D004672 1.7e-23 112.8 129 51.9
FvH4_4g04150 Fragaria vesca HOM05D003760 ORTHO05D004672 1.7e-23 112.8 136 51.5
FAN12G0242 Fragaria x ananassa HOM05D003760 ORTHO05D004672 1.7e-23 112.8 136 51.5
CARHR081950 Cardamine hirsuta HOM05D003760 ORTHO05D004672 2.2e-23 112.5 129 52.7
MD07G1036800 Malus domestica HOM05D003760 ORTHO05D004672 2.2e-23 112.5 129 51.9
Nn2g14898 Nelumbo nucifera HOM05D003760 ORTHO05D004672 2.2e-23 112.5 128 53.1
Sp3g06250 Schrenkiella parvula HOM05D003760 ORTHO05D004672 2.2e-23 112.5 129 52.7
AagrBONN_evm.TU.Sc2ySwM_344.807 Anthoceros agrestis HOM05D003760 ORTHO05D004672 2.9e-23 112.1 127 51.2
TAR633G0271 Trochodendron aralioides HOM05D003760 ORTHO05D004672 2.9e-23 112.1 130 53.1
TAR633G2507 Trochodendron aralioides HOM05D003760 ORTHO05D004672 2.9e-23 112.1 130 53.1
CAN.G476.4 Capsicum annuum HOM05D003760 ORTHO05D004672 5.0e-23 111.3 129 51.9
FAN22G1391 Fragaria x ananassa HOM05D003760 ORTHO05D004672 6.5e-23 110.9 136 50.7
C05p60000 Brassica napus HOM05D003760 ORTHO05D004672 8.4e-23 110.5 129 51.2
BolC5t34655H Brassica oleracea HOM05D003760 ORTHO05D004672 8.4e-23 110.5 129 51.2
Aa31LG5G17870 Aethionema arabicum HOM05D003760 ORTHO05D004672 1.1e-22 110.2 130 52.3
Pp3c10_19890 Physcomitrium patens HOM05D003760 ORTHO05D004672 1.1e-22 110.2 127 49.6
BNapus_Darmor_BZH_scaffold_109p00130 Brassica napus HOM05D003760 ORTHO05D004672 1.4e-22 109.8 129 51.2
BolC1t05559H Brassica oleracea HOM05D003760 ORTHO05D004672 1.4e-22 109.8 129 51.2
BraA01t04387Z Brassica rapa HOM05D003760 ORTHO05D004672 1.9e-22 109.4 129 51.2
Phvul.005G029500 Phaseolus vulgaris HOM05D003760 ORTHO05D004672 1.9e-22 109.4 127 50.4
Potri.010G068600 Populus trichocarpa HOM05D003760 ORTHO05D004672 1.9e-22 109.4 127 50.4
A05p40900 Brassica napus HOM05D003760 ORTHO05D004672 2.5e-22 109.0 129 50.4
BraA05t22819Z Brassica rapa HOM05D003760 ORTHO05D004672 2.5e-22 109.0 129 50.4
CDE07G1968 Ceratophyllum demersum HOM05D003760 ORTHO05D004672 2.5e-22 109.0 129 50.4
Psat6g019840 Pisum sativum HOM05D003760 ORTHO05D004672 2.5e-22 109.0 126 53.2
unitig_578.g16298 Utricularia gibba HOM05D003760 ORTHO05D004672 3.2e-22 108.6 129 50.4
Solyc11g005600.2 Solanum lycopersicum HOM05D003760 ORTHO05D004672 4.2e-22 108.2 129 50.4
Sopen11g001570 Solanum pennellii HOM05D003760 ORTHO05D004672 4.2e-22 108.2 129 50.4
MELO3C005125.2 Cucumis melo HOM05D003760 ORTHO05D004672 7.2e-22 107.5 129 50.4
CsaV3_5G024790 Cucumis sativus L. HOM05D003760 ORTHO05D004672 7.2e-22 107.5 129 50.4
Rhsim02G0042300 Rhododendron simsii HOM05D003760 ORTHO05D004672 9.3e-22 107.1 136 48.5
Sed0003663 Sechium edule HOM05D003760 ORTHO05D004672 9.3e-22 107.1 129 49.6
Mapoly0105s0017 Marchantia polymorpha HOM05D003760 ORTHO05D004672 1.6e-21 106.3 127 50.4
Pp3c21_14090 Physcomitrium patens HOM05D003760 ORTHO05D004672 1.6e-21 106.3 126 50.8
Sed0017009 Sechium edule HOM05D003760 ORTHO05D004672 2.1e-21 105.9 129 49.6
SMO340G0195 Selaginella moellendorffii HOM05D003760 ORTHO05D004672 3.5e-21 105.1 125 49.6
BcaB04g21296 Brassica carinata HOM05D003760 ORTHO05D004672 7.9e-21 104.0 121 49.6
Prupe.1G044800 Prunus persica HOM05D003760 ORTHO05D004672 1.8e-20 102.8 127 48.0
Sabra01G0019300 Salix brachista HOM05D003760 ORTHO05D004672 3.0e-20 102.1 168 44.0
Ciclev10006759m.g Citrus clementina HOM05D003760 ORTHO05D004672 8.7e-20 100.5 127 47.2
Atru.chr4.1982 Acer truncatum HOM05D003760 ORTHO05D004672 3.3e-19 98.6 128 45.3
Rhsim07G0066200 Rhododendron simsii HOM05D003760 ORTHO05D004672 3.7e-18 95.1 168 42.3
Sabra10G0038400 Salix brachista HOM05D003760 ORTHO05D004672 1.4e-17 93.2 152 42.1
Ah.11g039100 Amaranthus hybridus HOM05D003760 ORTHO05D004672 4.1e-17 91.7 130 46.9
Solyc09g090400.4 Solanum lycopersicum HOM05D003760 ORTHO05D004672 1.2e-16 90.1 53 88.7
COL.COLO4_15929 Corchorus olitorius HOM05D003760 ORTHO05D004672 3.4e-16 88.6 128 44.5
vmacro22865 Vaccinium macrocarpon HOM05D003760 ORTHO05D004672 7.7e-16 87.4 206 35.0
TAR701G0001 Trochodendron aralioides HOM05D003760 ORTHO05D004672 1.7e-15 86.3 54 79.6
AUR62043363 Chenopodium quinoa HOM05D003760 ORTHO05D004672 2.2e-15 85.9 54 79.6
TPR.G36778 Trifolium pratense HOM05D003760 ORTHO05D004672 2.2e-15 85.9 54 79.6
Duzib128G1330 Durio zibethinus HOM05D003760 ORTHO05D004672 5.0e-15 84.7 54 77.8
QL04p014432 Quercus lobata HOM05D003760 ORTHO05D004672 8.5e-15 84.0 107 50.5
ClCG01G007720 Citrullus lanatus HOM05D003760 ORTHO05D004672 1.4e-14 83.2 54 75.9
Thhalv10007798m.g Eutrema salsugineum HOM05D003760 ORTHO05D004672 1.4e-14 83.2 54 75.9
PRCOL_00001306 Prasinoderma coloniale HOM05D003760 ORTHO05D004672 3.6e-13 78.6 122 38.5
Cre16.g662902 Chlamydomonas reinhardtii HOM05D003760 ORTHO05D004672 8.8e-12 73.9 55 61.8
CBR_g42076 Chara braunii HOM05D003760 ORTHO05D004672 4.3e-11 71.6 58 56.9
Cfa022448 Carpinus fangiana HOM05D003760 ORTHO05D004672 3.7e-10 68.6 117 35.9
Dinv09260 Davidia involucrata HOM05D003760 ORTHO05D004672 6.9e-09 64.3 43 79.1
Os10g0392700 Oryza sativa ssp. japonica HOM05D003760 ORTHO05D004672 1.2e-08 63.5 43 79.1
Psat6g019960 Pisum sativum HOM05D003760 ORTHO05D004672 1.2e-08 63.5 61 60.7
RcHm_v2.0_Chr1g0378031 Rosa chinensis HOM05D003760 ORTHO05D004672 2.2e-07 59.3 42 76.2
Oeu014754.1 Olea europaea HOM05D003760 ORTHO05D004672 5.5e-06 54.7 31 74.2


User provided reference genes

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