Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 0.0e+00 1833.2 965 100.0
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 1.7e-286 989.6 1047 56.2
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 9.2e-280 967.2 1001 54.7
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 1.6e-279 966.5 1044 55.6
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 1.9e-277 959.5 996 54.4
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 2.1e-276 956.1 1002 54.7
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 4.7e-276 954.9 998 56.1
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 5.2e-275 951.4 996 55.2
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 7.8e-271 937.6 1041 54.5
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 1.3e-270 936.8 1064 53.4
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 2.5e-269 932.6 1111 51.8
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 3.6e-268 928.7 1058 53.9
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 1.8e-267 926.4 985 55.0
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 4.4e-266 921.8 974 55.2
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 1.9e-264 916.4 977 55.4
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 4.1e-264 915.2 976 54.6
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 1.0e-262 910.6 1049 52.2
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 3.9e-262 908.7 1041 53.7
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 1.1e-261 907.1 914 56.3
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 2.8e-260 902.5 1010 52.8
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 1.5e-258 896.7 991 54.0
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 3.4e-258 895.6 1013 52.2
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 4.4e-258 895.2 937 54.1
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 9.9e-258 894.0 1024 51.5
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.6e-255 886.7 1065 50.5
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 2.1e-255 886.3 998 52.7
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 6.0e-255 884.8 1001 53.3
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 2.3e-254 882.9 989 53.7
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 1.5e-253 880.2 971 53.8
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 4.3e-253 878.6 1041 52.6
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 5.6e-253 878.2 987 53.5
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 2.8e-252 875.9 1043 52.6
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 2.8e-252 875.9 1022 51.0
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 2.8e-252 875.9 1020 51.8
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.8e-251 873.2 1006 52.3
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.6e-250 869.4 1001 51.6
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 1.3e-249 867.1 722 64.0
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.9e-249 865.9 987 52.5
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.9e-248 863.2 929 53.7
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.4e-248 862.8 942 53.5
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 9.3e-248 860.9 1041 51.6
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 9.3e-248 860.9 982 52.9
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 9.3e-248 860.9 1012 51.8
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 2.7e-247 859.4 720 63.6
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 6.0e-247 858.2 1011 51.3
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 1.0e-246 857.4 942 53.3
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 1.3e-246 857.1 1093 48.6
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 7.3e-245 851.3 977 51.2
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 7.3e-245 851.3 925 53.6
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.6e-244 850.1 1049 50.1
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 5.3e-243 845.1 1005 50.2
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 9.9e-242 840.9 1025 50.9
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 2.4e-240 836.3 1128 47.9
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 1.2e-239 833.9 980 51.1
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 3.5e-239 832.4 986 50.7
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 1.8e-238 830.1 985 51.5
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 5.1e-238 828.6 997 49.1
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 8.7e-238 827.8 997 50.7
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 2.5e-237 826.2 1016 49.6
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 2.5e-237 826.2 1003 51.6
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 2.8e-236 822.8 1014 49.2
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 3.7e-236 822.4 1030 48.5
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.8e-235 820.1 977 49.9
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.4e-235 819.7 1045 49.0
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 1.7e-233 813.5 866 53.9
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 2.2e-233 813.1 1029 47.9
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 2.2e-233 813.1 972 50.4
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 2.7e-231 806.2 1029 47.7
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 3.9e-230 802.4 1065 47.3
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 3.9e-230 802.4 1011 48.5
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 5.6e-229 798.5 702 60.0
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 6.2e-228 795.0 1022 46.9
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.1e-227 794.3 962 49.5
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 1.5e-226 790.4 929 49.8
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 4.5e-226 788.9 1004 48.4
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 1.0e-225 787.7 934 49.6
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 1.0e-225 787.7 909 50.2
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 1.7e-225 786.9 1043 48.1
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 9.3e-224 781.2 1039 48.9
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 1.2e-223 780.8 985 49.5
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 2.1e-223 780.0 980 48.6
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 4.6e-223 778.9 986 49.1
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 6.1e-223 778.5 999 48.4
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 1.3e-222 777.3 991 47.6
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 1.8e-222 776.9 975 48.1
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 3.0e-222 776.2 987 48.2
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 3.3e-221 772.7 722 57.5
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 4.1e-219 765.8 999 47.4
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 2.9e-217 759.6 986 47.2
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 6.5e-217 758.4 712 57.9
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 8.5e-217 758.1 973 48.0
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 1.9e-216 756.9 1045 46.5
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 3.2e-216 756.1 707 57.7
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 7.2e-216 755.0 702 58.0
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 1.2e-215 754.2 988 47.5
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 2.7e-215 753.1 705 57.7
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 6.1e-215 751.9 976 47.5
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 7.9e-215 751.5 710 56.9
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 1.0e-214 751.1 1051 46.3
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 1.8e-214 750.4 977 47.5
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 8.8e-214 748.0 973 47.3
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 4.3e-213 745.7 703 56.9
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 9.7e-213 744.6 714 56.3
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 1.1e-211 741.1 1031 46.5
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 3.1e-211 739.6 724 56.8
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 1.5e-210 737.3 971 47.6
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 1.6e-207 727.2 916 48.3
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 1.8e-206 723.8 694 56.8
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 2.5e-200 703.4 973 48.6
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 1.2e-199 701.0 989 45.9
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 1.5e-197 694.1 764 51.0
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 1.4e-187 661.0 718 51.9
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 2.2e-185 653.7 719 51.7
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.5e-168 597.8 711 48.9
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.7e-164 584.3 1052 39.1
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 2.9e-164 583.6 728 45.3
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 9.5e-152 542.0 879 41.5
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 1.5e-149 534.6 658 45.3
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 2.7e-130 470.7 763 42.6
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 4.2e-123 446.8 694 39.8
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 1.5e-104 385.2 596 37.9
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 5.3e-102 376.7 308 60.7
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.0e-97 362.5 779 31.7
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 2.3e-97 361.3 933 29.0
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 2.4e-86 324.7 483 36.4
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 4.7e-42 177.6 115 73.9
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 6.8e-41 173.7 115 73.9
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 6.0e-29 134.0 438 26.0
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 1.2e-24 119.8 146 47.9
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 1.1e-22 113.2 177 41.8
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.2e-16 93.2 348 33.3
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 2.4e-14 85.5 146 39.7
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 3.2e-14 85.1 146 39.7
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 7.9e-13 80.5 80 55.0
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 5.6e-11 74.3 122 38.5
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 3.1e-09 68.6 122 36.9
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 9.0e-09 67.0 75 52.0


User provided reference genes

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