Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 2.2e-61 238.8 121 100.0
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 4.4e-30 134.8 112 67.9
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 2.2e-29 132.5 120 64.2
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.9e-29 132.1 112 66.1
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 2.9e-29 132.1 112 66.1
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.3e-26 123.2 125 60.0
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 1.3e-26 123.2 114 62.3
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.3e-26 123.2 113 61.1
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 3.9e-26 121.7 115 62.6
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.5e-25 119.8 106 64.2
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 1.5e-25 119.8 117 60.7
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 1.5e-25 119.8 105 60.0
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 2.5e-25 119.0 106 64.2
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 3.3e-25 118.6 106 64.2
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 4.3e-25 118.2 112 61.6
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 5.6e-25 117.9 107 63.6
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.8e-24 115.5 105 59.0
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 4.0e-23 111.7 122 57.4
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 6.8e-23 110.9 112 59.8
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 1.2e-22 110.2 117 55.6
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 1.5e-22 109.8 109 60.6
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 5.8e-22 107.8 107 62.6
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 6.4e-21 104.4 107 56.1
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 8.3e-21 104.0 105 57.1
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.1e-20 103.6 105 54.3
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.9e-20 102.8 100 64.0
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 4.1e-20 101.7 115 59.1
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 5.4e-20 101.3 113 57.5
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 7.0e-20 100.9 99 56.6
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 9.2e-20 100.5 95 58.9
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.2e-19 100.1 113 54.0
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 1.6e-19 99.8 99 55.6
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 2.0e-19 99.4 114 57.9
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 2.7e-19 99.0 101 57.4
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 2.7e-19 99.0 109 51.4
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 3.5e-19 98.6 108 52.8
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.5e-19 98.6 116 56.0
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 4.6e-19 98.2 115 55.7
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 4.6e-19 98.2 127 55.1
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 6.0e-19 97.8 113 49.6
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.3e-18 96.7 113 49.6
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.7e-18 96.3 106 57.5
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.7e-18 96.3 119 55.5
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 3.0e-18 95.5 99 54.5
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 3.9e-18 95.1 100 53.0
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.0e-18 94.7 118 55.1
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 5.0e-18 94.7 112 50.0
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 1.1e-17 93.6 111 52.3
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.1e-17 93.6 103 53.4
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.5e-17 93.2 94 54.3
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 1.9e-17 92.8 99 48.5
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 2.5e-17 92.4 111 54.1
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 2.5e-17 92.4 113 53.1
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 2.5e-17 92.4 113 48.7
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 3.3e-17 92.0 119 51.3
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 4.3e-17 91.7 108 50.9
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 4.3e-17 91.7 99 52.5
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 4.3e-17 91.7 95 54.7
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 5.6e-17 91.3 103 54.4
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 5.6e-17 91.3 113 52.2
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 7.3e-17 90.9 116 51.7
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 7.3e-17 90.9 116 51.7
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 7.3e-17 90.9 110 51.8
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 9.5e-17 90.5 99 52.5
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 1.2e-16 90.1 111 51.4
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 1.2e-16 90.1 109 50.5
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 1.6e-16 89.7 111 53.2
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.6e-16 89.7 101 51.5
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 2.1e-16 89.4 98 54.1
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.8e-16 89.0 101 52.5
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.8e-16 89.0 101 52.5
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 2.8e-16 89.0 113 45.1
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.6e-16 88.6 107 50.5
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.7e-16 88.2 107 50.5
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 6.2e-16 87.8 113 48.7
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.1e-16 87.4 96 53.1
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.4e-15 86.7 109 53.2
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.8e-15 86.3 107 49.5
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.8e-15 86.3 96 52.1
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.8e-15 86.3 107 49.5
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 5.2e-15 84.7 92 53.3
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 6.8e-15 84.3 103 50.5
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 6.8e-15 84.3 103 52.4
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 6.8e-15 84.3 93 54.8
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.2e-14 83.6 111 50.5
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.2e-14 83.6 108 48.1
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.5e-14 83.2 111 51.4
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.0e-14 82.8 107 45.8
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 2.6e-14 82.4 109 49.5
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 2.6e-14 82.4 112 51.8
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.4e-14 82.0 102 50.0
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 4.4e-14 81.6 112 49.1
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 5.8e-14 81.3 103 46.6
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 5.8e-14 81.3 116 47.4
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 9.8e-14 80.5 119 46.2
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 9.8e-14 80.5 114 45.6
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.3e-13 80.1 112 46.4
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.2e-13 79.3 111 49.5
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 3.7e-13 78.6 101 47.5
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 3.7e-13 78.6 114 45.6
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 4.9e-13 78.2 109 45.9
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.4e-13 77.8 124 40.3
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.4e-13 77.8 124 40.3
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 8.3e-13 77.4 114 43.9
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.1e-12 77.0 101 46.5
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 1.1e-12 77.0 114 50.0
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 1.4e-12 76.6 120 43.3
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 2.4e-12 75.9 90 46.7
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.4e-12 75.9 114 49.1
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 4.1e-12 75.1 97 50.5
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 4.1e-12 75.1 114 45.6
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 7.1e-12 74.3 104 47.1
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 7.1e-12 74.3 113 45.1
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 1.6e-11 73.2 124 42.7
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.6e-11 73.2 95 48.4
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.6e-11 73.2 95 48.4
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.1e-11 72.8 105 44.8
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 2.7e-11 72.4 114 44.7
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 2.7e-11 72.4 109 44.0
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 3.5e-11 72.0 114 44.7
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 3.5e-11 72.0 112 44.6
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.5e-11 72.0 104 44.2
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 4.6e-11 71.6 102 48.0
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 7.8e-11 70.9 105 44.8
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 7.8e-11 70.9 117 46.2
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.8e-11 70.9 96 44.8
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 7.8e-11 70.9 101 47.5
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 7.8e-11 70.9 112 45.5
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.0e-10 70.5 105 43.8
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.0e-10 70.5 99 44.4
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.3e-10 70.1 95 47.4
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.3e-10 69.3 104 42.3
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 2.3e-10 69.3 105 43.8
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.9e-10 68.6 112 44.6
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 3.9e-10 68.6 125 41.6
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.9e-10 68.6 101 41.6
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 5.1e-10 68.2 101 43.6
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 6.6e-10 67.8 111 45.9
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 8.6e-10 67.4 97 46.4
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 1.1e-09 67.0 86 44.2
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 1.1e-09 67.0 113 40.7
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 1.5e-09 66.6 106 43.4
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 1.9e-09 66.2 114 43.0
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 1.9e-09 66.2 114 43.0
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 1.9e-09 66.2 114 43.0
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.9e-09 66.2 105 45.7
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 3.3e-09 65.5 105 42.9
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 3.3e-09 65.5 97 45.4
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 7.3e-09 64.3 98 46.9
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 7.3e-09 64.3 97 46.4
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.2e-08 63.5 97 48.5
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.2e-08 63.5 89 46.1
PGSC0003DMG400013448 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.6e-08 63.2 46 71.7
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.1e-08 62.8 98 45.9
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 2.1e-08 62.8 97 44.3
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 2.1e-08 62.8 97 44.3
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 2.1e-08 62.8 97 44.3
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 2.8e-08 62.4 102 43.1
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.8e-08 62.4 89 46.1
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 3.6e-08 62.0 117 37.6
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 3.6e-08 62.0 97 44.3
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 3.6e-08 62.0 97 44.3
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 6.2e-08 61.2 95 44.2
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 6.2e-08 61.2 95 44.2
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.8e-07 59.7 103 42.7
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.0e-07 58.5 104 42.3
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 6.8e-07 57.8 98 43.9
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 6.8e-07 57.8 98 43.9
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 6.8e-07 57.8 97 41.2
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 6.8e-07 57.8 101 42.6
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.6e-06 55.8 104 39.4
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 4.4e-06 55.1 105 39.0
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.8e-06 54.7 83 43.4
CiPaw.13G089400 Carya illinoinensis HOM05D008943 ORTHO05D010477 9.9e-06 53.9 98 39.8
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 9.9e-06 53.9 106 35.8


User provided reference genes

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