Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 0.0e+00 1448.0 732 100.0
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 0.0e+00 1115.1 735 77.6
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 0.0e+00 1109.4 733 77.8
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 0.0e+00 1104.7 704 79.7
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1100.1 729 76.7
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1094.0 731 76.7
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 0.0e+00 1092.8 733 75.3
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 0.0e+00 1089.7 723 76.8
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 0.0e+00 1087.4 757 74.6
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 0.0e+00 1080.9 703 77.1
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 0.0e+00 1080.9 735 75.8
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 0.0e+00 1080.1 718 76.5
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 0.0e+00 1079.3 733 74.8
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 0.0e+00 1078.2 733 74.8
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 0.0e+00 1075.5 807 69.0
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 3.8e-310 1067.8 749 74.4
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 3.5e-308 1061.2 724 75.0
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.9e-306 1055.4 728 74.7
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 3.1e-304 1048.1 726 74.0
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 7.6e-303 1043.5 732 72.7
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 5.5e-301 1037.3 724 72.9
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 7.2e-301 1036.9 752 71.7
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.6e-300 1035.8 703 74.5
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.0e-299 1033.1 711 75.0
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 3.9e-299 1031.2 703 73.7
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 4.3e-298 1027.7 725 73.1
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 9.7e-298 1026.5 715 72.4
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 3.7e-297 1024.6 731 71.1
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 4.8e-297 1024.2 726 73.3
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 9.1e-296 1020.0 712 72.5
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 2.0e-295 1018.8 714 72.0
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 2.6e-295 1018.5 729 70.4
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 2.2e-294 1015.4 710 73.7
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 3.8e-294 1014.6 710 72.7
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 6.5e-294 1013.8 713 71.4
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 8.5e-294 1013.4 709 73.8
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 9.4e-293 1010.0 710 72.1
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.2e-292 1009.6 732 71.3
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 2.1e-292 1008.8 724 70.6
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.7e-292 1008.4 710 72.3
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 7.9e-292 1006.9 732 72.3
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 2.3e-291 1005.4 712 72.2
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 3.0e-291 1005.0 712 72.1
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 6.7e-291 1003.8 726 71.3
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 8.8e-291 1003.4 733 69.7
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.5e-290 1002.7 698 74.2
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 4.4e-290 1001.1 718 69.5
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 9.7e-290 1000.0 734 70.0
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.3e-289 999.6 729 69.8
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 1.3e-289 999.6 700 74.6
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 2.2e-289 998.8 714 71.8
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 1.1e-288 996.5 710 71.1
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 9.1e-288 993.4 729 69.4
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 2.6e-287 991.9 700 72.3
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 2.6e-287 991.9 732 71.0
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 2.6e-287 991.9 727 69.9
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 1.1e-285 986.5 708 72.2
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 4.2e-285 984.6 685 75.0
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 7.2e-285 983.8 725 70.6
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.2e-284 983.0 729 69.0
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 1.6e-284 982.6 727 69.6
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.0e-283 979.9 758 67.8
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 3.9e-283 978.0 760 68.6
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 1.7e-281 972.6 706 69.7
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 8.2e-281 970.3 722 69.9
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 3.1e-280 968.4 726 68.9
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 3.1e-280 968.4 719 69.8
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 1.6e-279 966.1 728 67.6
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 7.7e-279 963.8 708 68.6
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 2.2e-278 962.2 704 69.5
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 3.8e-278 961.4 742 66.4
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 7.2e-277 957.2 728 66.6
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 1.2e-276 956.4 728 66.3
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 6.1e-276 954.1 729 66.5
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.8e-275 952.6 717 66.5
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 1.5e-274 949.5 637 75.5
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 2.0e-274 949.1 731 67.2
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 2.8e-273 945.3 732 66.3
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 3.7e-273 944.9 684 70.9
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 6.3e-273 944.1 702 67.9
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 8.2e-273 943.7 731 66.5
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 1.4e-272 943.0 717 68.1
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 4.1e-272 941.4 731 66.5
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 1.6e-271 939.5 731 65.7
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 1.1e-269 933.3 731 65.4
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 9.8e-266 920.2 737 64.0
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 1.3e-265 919.8 719 66.5
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 4.8e-265 917.9 681 70.6
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 3.1e-264 915.2 713 66.1
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 2.0e-263 912.5 719 66.3
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 6.6e-262 907.5 658 72.5
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.2e-260 903.3 667 71.7
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 6.1e-260 901.0 722 65.5
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 2.3e-259 899.0 715 65.9
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.0e-259 898.7 731 63.3
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 5.2e-259 897.9 711 64.6
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 2.0e-258 896.0 720 65.6
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 2.6e-258 895.6 720 65.6
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 2.6e-258 895.6 720 65.4
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 5.7e-258 894.4 710 65.8
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 7.5e-258 894.0 731 63.5
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 1.1e-256 890.2 719 65.1
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 5.4e-256 887.9 711 64.0
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 2.9e-254 882.1 726 64.3
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 4.3e-253 878.2 730 62.2
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 5.6e-253 877.9 731 64.4
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.3e-249 866.7 712 63.1
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 8.3e-249 864.0 754 61.5
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.6e-244 849.7 721 62.0
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 4.7e-244 848.2 615 72.8
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 4.0e-243 845.1 709 63.9
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 2.8e-236 822.4 732 61.2
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 2.8e-236 822.4 645 68.4
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 8.1e-236 820.8 708 63.3
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 8.9e-235 817.4 736 61.0
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.9e-233 812.4 550 77.3
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 2.7e-231 805.8 570 73.2
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.8e-227 791.2 610 69.5
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 3.4e-226 788.9 719 57.9
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 1.6e-223 780.0 717 57.3
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 3.0e-222 775.8 705 59.3
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-219 767.3 564 72.0
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 2.8e-212 742.7 724 57.5
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.1e-211 740.7 619 64.9
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 3.1e-203 712.6 577 65.0
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 5.8e-202 708.4 712 53.9
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 3.1e-195 686.0 650 57.4
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 5.5e-192 675.2 507 68.8
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 7.1e-192 674.9 697 54.7
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 1.9e-176 623.6 711 49.5
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.0e-154 550.4 608 52.3
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.5e-144 516.9 333 78.4
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 1.0e-142 511.5 870 38.3
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 9.2e-123 445.3 470 54.3
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 8.1e-119 432.2 261 82.0
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.2e-118 429.5 261 82.4
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 5.3e-94 349.7 368 52.4
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 4.6e-90 336.7 487 41.7
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 4.1e-78 297.0 322 52.2
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 4.8e-63 246.9 547 35.5
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.2e-52 211.5 185 61.1
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 3.8e-52 210.7 283 44.9
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 9.4e-51 206.1 126 77.0
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 1.0e-41 176.0 138 68.1
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 2.0e-40 171.8 122 70.5
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 3.0e-33 147.9 323 35.3
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 1.4e-30 139.0 196 45.4
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 1.4e-30 139.0 159 49.7
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 5.9e-29 133.7 124 55.6
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 7.7e-29 133.3 139 52.5
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 1.7e-28 132.1 185 43.2
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 7.3e-27 126.7 121 56.2
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 5.2e-25 120.6 320 32.8
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 8.9e-17 93.2 88 54.5
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 1.7e-15 89.0 85 48.2
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 1.7e-15 89.0 55 72.7
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 7.0e-14 83.6 58 70.7
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.6e-13 80.9 56 62.5
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.6e-13 80.9 56 62.5
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.1e-10 72.0 51 64.7
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 4.0e-09 67.8 67 49.3
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 5.2e-09 67.4 37 83.8
Nn1g02457 Nelumbo nucifera HOM05D004359 ORTHO05D005052 2.4e-06 58.5 32 75.0


User provided reference genes

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