Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g04000 Coffea canephora HOM05D001311 ORTHO05D038536 1.1e-53 213.0 102 100.0
DCAR_002378 Daucus carota HOM05D001311 ORTHO05D001204 2.9e-14 82.0 70 52.9
Dinv14009 Davidia involucrata HOM05D006687 ORTHO05D008379 3.7e-14 81.6 61 57.4
Actinidia08484 Actinidia chinensis HOM05D001311 ORTHO05D001204 6.4e-14 80.9 69 55.1
Nitab4.5_0001237g0010 Nicotiana tabacum HOM05D001311 ORTHO05D001204 6.4e-14 80.9 68 55.9
CSS0028312 Camellia sinensis var. sinensis HOM05D001311 ORTHO05D001204 1.8e-13 79.3 63 57.1
Rhsim02G0026400 Rhododendron simsii HOM05D001311 ORTHO05D001204 1.8e-13 79.3 70 51.4
Dinv14008 Davidia involucrata HOM05D001311 ORTHO05D001204 2.4e-13 79.0 101 41.6
CSS0026047 Camellia sinensis var. sinensis HOM05D001311 ORTHO05D001204 3.2e-13 78.6 63 57.1
Hma1.2p1_0602F.1_g187470 Hydrangea macrophylla HOM05D001311 ORTHO05D001204 3.2e-13 78.6 58 56.9
Nitab4.5_0001157g0010 Nicotiana tabacum HOM05D001311 ORTHO05D001204 4.1e-13 78.2 69 55.1
Thecc.04G234500 Theobroma cacao HOM05D001311 ORTHO05D001204 5.4e-13 77.8 68 44.1
CAN.G1094.16 Capsicum annuum HOM05D001311 ORTHO05D001204 9.2e-13 77.0 68 54.4
Nitab4.5_0001237g0030 Nicotiana tabacum HOM05D001311 ORTHO05D001204 9.2e-13 77.0 94 43.6
Rhsim02G0026600 Rhododendron simsii HOM05D001311 ORTHO05D001204 1.2e-12 76.6 70 50.0
CAN.G1094.18 Capsicum annuum HOM05D001311 ORTHO05D001204 2.7e-12 75.5 69 55.1
Duzib151G0208 Durio zibethinus HOM05D001311 ORTHO05D001204 6.0e-12 74.3 70 48.6
Aqoxy2G03418 Aquilegia oxysepala HOM05D001311 ORTHO05D001204 7.8e-12 73.9 52 53.8
Aqoxy2G01172 Aquilegia oxysepala HOM05D001311 ORTHO05D038536 1.0e-11 73.6 59 50.8
DCAR_030652 Daucus carota HOM05D001311 ORTHO05D001204 1.0e-11 73.6 63 46.0
Nitab4.5_0006783g0010 Nicotiana tabacum HOM05D001311 ORTHO05D001204 1.0e-11 73.6 69 47.8
RhsimUnG0028600 Rhododendron simsii HOM05D001311 ORTHO05D001204 1.0e-11 73.6 70 50.0
Actinidia23524 Actinidia chinensis HOM05D001311 ORTHO05D001204 1.3e-11 73.2 55 54.5
Sabra10G0058000 Salix brachista HOM05D001311 ORTHO05D001204 1.3e-11 73.2 72 45.8
PGSC0003DMG400032273 Solanum tuberosum HOM05D001311 ORTHO05D001204 1.7e-11 72.8 69 50.7
CAN.G630.59 Capsicum annuum HOM05D001311 ORTHO05D001204 2.3e-11 72.4 69 42.0
Solyc09g082230.1 Solanum lycopersicum HOM05D001311 ORTHO05D001204 2.3e-11 72.4 69 52.2
Sopen09g031110 Solanum pennellii HOM05D001311 ORTHO05D001204 2.3e-11 72.4 69 52.2
Nitab4.5_0001157g0020 Nicotiana tabacum HOM05D001311 ORTHO05D001204 3.0e-11 72.0 71 47.9
Actinidia36951 Actinidia chinensis HOM05D001311 ORTHO05D001204 3.9e-11 71.6 48 60.4
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.9e-11 71.6 70 48.6
vmacro15353 Vaccinium macrocarpon HOM05D001311 ORTHO05D001204 3.9e-11 71.6 69 47.8
Nn6g34102 Nelumbo nucifera HOM05D001311 ORTHO05D001204 5.0e-11 71.2 69 47.8
Potri.010G085600 Populus trichocarpa HOM05D001311 ORTHO05D001204 5.0e-11 71.2 55 50.9
Sopen06g019250 Solanum pennellii HOM05D001311 ORTHO05D001204 5.0e-11 71.2 69 43.5
GSVIVG01018003001 Vitis vinifera HOM05D001311 ORTHO05D001204 6.6e-11 70.9 64 40.6
Ciclev10005998m.g Citrus clementina HOM05D001311 ORTHO05D001204 8.6e-11 70.5 73 46.6
Atru.chr4.2441 Acer truncatum HOM05D001311 ORTHO05D001204 1.1e-10 70.1 70 48.6
COL.COLO4_21510 Corchorus olitorius HOM05D001311 ORTHO05D001204 1.5e-10 69.7 63 41.3
DCAR_002377 Daucus carota HOM05D001311 ORTHO05D001204 1.5e-10 69.7 55 54.5
Rhsim04G0201100 Rhododendron simsii HOM05D001311 ORTHO05D001204 1.5e-10 69.7 71 47.9
TAR636G0293 Trochodendron aralioides HOM05D001311 ORTHO05D001204 1.5e-10 69.7 83 41.0
Actinidia40137 Actinidia chinensis HOM05D006687 ORTHO05D008379 1.9e-10 69.3 54 53.7
CSS0004976 Camellia sinensis var. sinensis HOM05D001311 ORTHO05D001204 2.5e-10 68.9 55 50.9
Gohir.D02G040000 Gossypium hirsutum HOM05D001311 ORTHO05D001204 2.5e-10 68.9 58 41.4
Gorai.005G044300 Gossypium raimondii HOM05D001311 ORTHO05D001204 2.5e-10 68.9 58 41.4
Gorai.005G044500 Gossypium raimondii HOM05D001311 ORTHO05D001204 2.5e-10 68.9 64 37.5
Nn6g34103 Nelumbo nucifera HOM05D001311 ORTHO05D001204 2.5e-10 68.9 69 46.4
CSS0008296 Camellia sinensis var. sinensis HOM05D001311 ORTHO05D001204 3.3e-10 68.6 55 50.9
CSS0018712 Camellia sinensis var. sinensis HOM05D001311 ORTHO05D001204 3.3e-10 68.6 55 50.9
COL.COLO4_21507 Corchorus olitorius HOM05D001311 ORTHO05D001204 3.3e-10 68.6 56 44.6
Gohir.A02G033500 Gossypium hirsutum HOM05D001311 ORTHO05D001204 4.3e-10 68.2 58 41.4
PSO210G2080 Papaver somniferum HOM05D001311 ORTHO05D001204 4.3e-10 68.2 51 49.0
Aqoxy2G03417 Aquilegia oxysepala HOM05D001311 ORTHO05D001204 5.6e-10 67.8 71 49.3
Nitab4.5_0000321g0130 Nicotiana tabacum HOM05D001311 ORTHO05D001204 5.6e-10 67.8 70 45.7
Peaxi162Scf00131g00015 Petunia axillaris HOM05D002528 ORTHO05D001204 5.6e-10 67.8 55 49.1
Prupe.1G016600 Prunus persica HOM05D001311 ORTHO05D001204 5.6e-10 67.8 54 50.0
CSS0022770 Camellia sinensis var. sinensis HOM05D001311 ORTHO05D001204 1.6e-09 66.2 55 49.1
Gohir.D02G040100 Gossypium hirsutum HOM05D001311 ORTHO05D001204 1.6e-09 66.2 58 39.7
Hma1.2p1_1572F.1_g291360 Hydrangea macrophylla HOM05D001311 ORTHO05D001204 1.6e-09 66.2 56 48.2
RcHm_v2.0_Chr4g0415651 Rosa chinensis HOM05D001311 ORTHO05D001204 1.6e-09 66.2 62 48.4
TAR636G0806 Trochodendron aralioides HOM05D001311 ORTHO05D001204 2.1e-09 65.9 69 43.5
COL.COLO4_21508 Corchorus olitorius HOM05D001311 ORTHO05D001204 2.8e-09 65.5 63 41.3
Oeu049781.1 Olea europaea HOM05D001311 ORTHO05D001204 2.8e-09 65.5 68 42.6
PSO761G0572 Papaver somniferum HOM05D001311 ORTHO05D001204 2.8e-09 65.5 51 45.1
TAR636G3534 Trochodendron aralioides HOM05D001311 ORTHO05D001204 2.8e-09 65.5 90 36.7
Hma1.2p1_2201F.1_g317020 Hydrangea macrophylla HOM05D001311 ORTHO05D001204 3.6e-09 65.1 50 50.0
TWI53G0321 Tripterygium wilfordii HOM05D001311 ORTHO05D001204 3.6e-09 65.1 52 50.0
DCAR_030650 Daucus carota HOM05D000122 ORTHO05D002085 4.7e-09 64.7 69 39.1
Nitab4.5_0001834g0040 Nicotiana tabacum HOM05D001311 ORTHO05D001204 4.7e-09 64.7 65 47.7
QL06p001953 Quercus lobata HOM05D001311 ORTHO05D001204 4.7e-09 64.7 55 45.5
THA.LOC104815883 Tarenaya hassleriana HOM05D001311 ORTHO05D001204 4.7e-09 64.7 51 49.0
TWI34G1927 Tripterygium wilfordii HOM05D001311 ORTHO05D001204 4.7e-09 64.7 55 45.5
Atru.chr4.2442 Acer truncatum HOM05D001311 ORTHO05D001204 6.2e-09 64.3 55 43.6
Atru.ctg752_3.56 Acer truncatum HOM05D001311 ORTHO05D001204 6.2e-09 64.3 55 43.6
Ciclev10005971m.g Citrus clementina HOM05D001311 ORTHO05D001204 6.2e-09 64.3 52 51.9
MD16G1196500 Malus domestica HOM05D001311 ORTHO05D001204 6.2e-09 64.3 70 44.3
Sopen09g031120 Solanum pennellii HOM05D001311 ORTHO05D001204 6.2e-09 64.3 69 50.7
SGA_v2.0_scaffold191G40509 Striga asiatica HOM05D001311 ORTHO05D001204 6.2e-09 64.3 52 53.8
MSTRG.9972 Avicennia marina HOM05D001311 ORTHO05D001204 8.0e-09 63.9 69 43.5
PGR004G1722 Punica granatum HOM05D001311 ORTHO05D001204 8.0e-09 63.9 52 46.2
PGSC0003DMG400032272 Solanum tuberosum HOM05D001311 ORTHO05D001204 8.0e-09 63.9 69 52.2
Eucgr.B01057 Eucalyptus grandis HOM05D001311 ORTHO05D001204 1.1e-08 63.5 52 46.2
SalBow2G0353 Salvia bowleyana HOM05D001311 ORTHO05D001204 1.1e-08 63.5 56 51.8
CANSAT78G1189 Cannabis sativa HOM05D001311 ORTHO05D001204 1.4e-08 63.2 52 50.0
QL06p001965 Quercus lobata HOM05D001311 ORTHO05D001204 1.4e-08 63.2 51 47.1
Solyc06g054090.2 Solanum lycopersicum HOM05D001311 ORTHO05D001204 1.4e-08 63.2 69 40.6
Migut.G00351 Erythranthe guttata HOM05D001311 ORTHO05D001204 1.8e-08 62.8 56 44.6
Solyc09g082250.3 Solanum lycopersicum HOM05D001311 ORTHO05D001204 1.8e-08 62.8 59 50.8
Haze_00879 Corylus avellana HOM05D001311 ORTHO05D001204 2.3e-08 62.4 71 39.4
Migut.G00353 Erythranthe guttata HOM05D001311 ORTHO05D001204 2.3e-08 62.4 56 50.0
FvH4_4g16130 Fragaria vesca HOM05D001311 ORTHO05D001204 2.3e-08 62.4 62 45.2
RcHm_v2.0_Chr4g0415661 Rosa chinensis HOM05D001311 ORTHO05D001204 2.3e-08 62.4 61 42.6
RcHm_v2.0_Chr4g0415691 Rosa chinensis HOM05D001311 ORTHO05D001204 2.3e-08 62.4 61 42.6
Dinv44549 Davidia involucrata HOM05D001311 ORTHO05D001204 3.1e-08 62.0 64 48.4
Manes.03G176700 Manihot esculenta HOM05D001311 ORTHO05D001204 3.1e-08 62.0 72 38.9
PGR044G0920 Punica granatum HOM05D001311 ORTHO05D001204 3.1e-08 62.0 52 44.2
Nitab4.5_0012606g0010 Nicotiana tabacum HOM05D001311 ORTHO05D001204 4.0e-08 61.6 57 42.1
Cpa.g.sc58.88 Carica papaya HOM05D001311 ORTHO05D001204 5.2e-08 61.2 59 40.7
Peaxi162Scf00092g00414 Petunia axillaris HOM05D001311 ORTHO05D001204 5.2e-08 61.2 71 40.8
FAN09G2018 Fragaria x ananassa HOM05D001311 ORTHO05D001204 6.8e-08 60.8 62 43.5
Sp4g14450 Schrenkiella parvula HOM05D001311 ORTHO05D001204 6.8e-08 60.8 50 48.0
Hund19070 Selenicereus undatus HOM05D001311 ORTHO05D001204 6.8e-08 60.8 66 40.9
Carub.0004s1338 Capsella rubella HOM05D001311 ORTHO05D001204 8.9e-08 60.5 50 46.0
Thhalv10017278m.g Eutrema salsugineum HOM05D001311 ORTHO05D001204 8.9e-08 60.5 50 48.0
Sed0012209 Sechium edule HOM05D001311 ORTHO05D001204 8.9e-08 60.5 50 44.0
VMungo1215G0878 Vigna mungo HOM05D001311 ORTHO05D001204 8.9e-08 60.5 68 41.2
Cc03_g03980 Coffea canephora HOM05D001311 ORTHO05D001204 1.2e-07 60.1 52 44.2
MBI04_g13669_MAGBIO Magnolia biondii HOM05D001311 ORTHO05D001204 1.2e-07 60.1 58 44.8
TAR365G1051 Trochodendron aralioides HOM05D001311 ORTHO05D001204 1.2e-07 60.1 64 39.1
MBI16_g26395_MAGBIO Magnolia biondii HOM05D001311 ORTHO05D001204 1.5e-07 59.7 62 43.5
SalBow2G1348 Salvia bowleyana HOM05D001311 ORTHO05D001204 1.5e-07 59.7 48 50.0
Aa31LG5G4980 Aethionema arabicum HOM05D001311 ORTHO05D001204 2.0e-07 59.3 59 39.0
AT2G32030 Arabidopsis thaliana HOM05D001311 ORTHO05D001204 2.0e-07 59.3 50 46.0
Medtr5g006450 Medicago truncatula HOM05D001311 ORTHO05D001204 2.0e-07 59.3 66 39.4
MBI05_g12087_MAGBIO Magnolia biondii HOM05D001311 ORTHO05D001204 2.6e-07 58.9 68 42.6
CARHR125820 Cardamine hirsuta HOM05D001311 ORTHO05D001204 3.4e-07 58.5 50 42.0
Ca_24405_v3 Cicer arietinum L. HOM05D001311 ORTHO05D001204 3.4e-07 58.5 67 41.8
Ciclev10005999m.g Citrus clementina HOM05D001311 ORTHO05D001204 3.4e-07 58.5 54 44.4
PSO170G3182 Papaver somniferum HOM05D001311 ORTHO05D001204 3.4e-07 58.5 51 43.1
PSO210G3021 Papaver somniferum HOM05D001311 ORTHO05D001204 3.4e-07 58.5 51 43.1
Prupe.1G016700 Prunus persica HOM05D001311 ORTHO05D001204 3.4e-07 58.5 66 39.4
VMungo1215G3166 Vigna mungo HOM05D001311 ORTHO05D001204 3.4e-07 58.5 57 43.9
Eucgr.H03446 Eucalyptus grandis HOM05D001311 ORTHO05D001204 4.4e-07 58.2 50 44.0
BraA04t17989Z Brassica rapa HOM05D001311 ORTHO05D001204 5.8e-07 57.8 80 37.5
Rhsim04G0201000 Rhododendron simsii HOM05D001311 ORTHO05D001204 5.8e-07 57.8 50 42.0
FAN07G1835 Fragaria x ananassa HOM05D001311 ORTHO05D001204 7.5e-07 57.4 55 41.8
Nn6g34100 Nelumbo nucifera HOM05D001311 ORTHO05D001204 7.5e-07 57.4 52 46.2
TPR.G36021 Trifolium pratense HOM05D001311 ORTHO05D001204 7.5e-07 57.4 67 41.8
C04p61640 Brassica napus HOM05D001311 ORTHO05D001204 9.8e-07 57.0 50 44.0
CAN.G1094.19 Capsicum annuum HOM05D001311 ORTHO05D114933 9.8e-07 57.0 56 46.4
Eucgr.H03445 Eucalyptus grandis HOM05D001311 ORTHO05D001204 9.8e-07 57.0 52 42.3
Nn1g02362 Nelumbo nucifera HOM05D001311 ORTHO05D001204 9.8e-07 57.0 60 36.7
CiPaw.01G168100 Carya illinoinensis HOM05D001311 ORTHO05D001204 1.3e-06 56.6 55 36.4
Nn6g34099 Nelumbo nucifera HOM05D001311 ORTHO05D001204 1.3e-06 56.6 50 44.0
A04p24690 Brassica napus HOM05D001311 ORTHO05D001204 1.7e-06 56.2 50 46.0
CsaV3_1G039640 Cucumis sativus L. HOM05D001311 ORTHO05D001204 1.7e-06 56.2 54 44.4
Thhalv10017288m.g Eutrema salsugineum HOM05D001311 ORTHO05D001204 1.7e-06 56.2 50 46.0
FAN12G1141 Fragaria x ananassa HOM05D001311 ORTHO05D001204 1.7e-06 56.2 56 39.3
FAN12G1914 Fragaria x ananassa HOM05D001311 ORTHO05D001204 1.7e-06 56.2 56 39.3
LjContig00408g0015666 Lotus japonicus HOM05D001311 ORTHO05D001204 1.7e-06 56.2 47 44.7
Nn5g27734 Nelumbo nucifera HOM05D001311 ORTHO05D001204 1.7e-06 56.2 52 48.1
Phvul.002G044100 Phaseolus vulgaris HOM05D001311 ORTHO05D001204 1.7e-06 56.2 56 44.6
Atru.chr2.659 Acer truncatum HOM05D001311 ORTHO05D001204 2.2e-06 55.8 59 37.3
Atru.ctg752_3.57 Acer truncatum HOM05D001311 ORTHO05D000165 2.2e-06 55.8 72 30.6
BcaC02g07951 Brassica carinata HOM05D001311 ORTHO05D001204 2.2e-06 55.8 67 38.8
C04p61630 Brassica napus HOM05D001311 ORTHO05D001204 2.2e-06 55.8 67 38.8
BolC4t27647H Brassica oleracea HOM05D001311 ORTHO05D001204 2.2e-06 55.8 67 38.8
BolC4t27648H Brassica oleracea HOM05D001311 ORTHO05D001204 2.2e-06 55.8 80 37.5
Medtr5g006470 Medicago truncatula HOM05D001311 ORTHO05D001204 2.2e-06 55.8 66 40.9
TPR.G37957 Trifolium pratense HOM05D001311 ORTHO05D001204 2.2e-06 55.8 66 40.9
AL4G27410 Arabidopsis lyrata HOM05D001311 ORTHO05D001204 2.9e-06 55.5 74 36.5
Glyma.01G236500 Glycine max HOM05D001311 ORTHO05D001204 2.9e-06 55.5 56 41.1
BcaB06g28581 Brassica carinata HOM05D001311 ORTHO05D001204 3.7e-06 55.1 78 37.2
BcaC02g07925 Brassica carinata HOM05D001311 ORTHO05D001204 3.7e-06 55.1 67 40.3
C04p61890 Brassica napus HOM05D001311 ORTHO05D001204 3.7e-06 55.1 67 40.3
BraA04t17988Z Brassica rapa HOM05D001311 ORTHO05D001204 3.7e-06 55.1 71 39.4
AUR62018402 Chenopodium quinoa HOM05D001311 ORTHO05D001204 3.7e-06 55.1 53 39.6
COL.COLO4_21506 Corchorus olitorius HOM05D001311 ORTHO05D001204 3.7e-06 55.1 51 51.0
FvH4_4g26600 Fragaria vesca HOM05D001311 ORTHO05D001204 3.7e-06 55.1 56 39.3
LjContig00408g0027005 Lotus japonicus HOM05D001311 ORTHO05D001204 3.7e-06 55.1 47 44.7
Manes.15G030300 Manihot esculenta HOM05D001311 ORTHO05D001204 3.7e-06 55.1 55 40.0
Psat4g209840 Pisum sativum HOM05D001311 ORTHO05D001204 3.7e-06 55.1 66 39.4
BcaB02g10440 Brassica carinata HOM05D001311 ORTHO05D001204 4.9e-06 54.7 50 44.0
BcaB06g28580 Brassica carinata HOM05D001311 ORTHO05D001204 4.9e-06 54.7 50 44.0
Carub.0004s1337 Capsella rubella HOM05D001311 ORTHO05D001204 4.9e-06 54.7 69 33.3
CiPaw.07G008400 Carya illinoinensis HOM05D001311 ORTHO05D001204 4.9e-06 54.7 51 41.2
Ca_24406_v3 Cicer arietinum L. HOM05D001311 ORTHO05D001204 4.9e-06 54.7 68 38.2
Eucgr.H03444 Eucalyptus grandis HOM05D001311 ORTHO05D001204 4.9e-06 54.7 69 39.1
Sp4g14430 Schrenkiella parvula HOM05D001311 ORTHO05D001204 4.9e-06 54.7 67 37.3
Sed0008152 Sechium edule HOM05D001311 ORTHO05D001204 4.9e-06 54.7 51 39.2
SEGI_15707 Sequoiadendron giganteum HOM05D001311 ORTHO05D001204 4.9e-06 54.7 50 42.0
CANSAT78G2342 Cannabis sativa HOM05D001311 ORTHO05D001204 6.4e-06 54.3 50 38.0
arahy.Tifrunner.gnm1.ann1.B2PPBR Arachis hypogaea HOM05D001311 ORTHO05D001204 8.3e-06 53.9 48 41.7
A04p24700 Brassica napus HOM05D001311 ORTHO05D001204 8.3e-06 53.9 79 34.2
MD13G1195500 Malus domestica HOM05D001311 ORTHO05D001204 8.3e-06 53.9 54 42.6
Medtr5g006520 Medicago truncatula HOM05D000592 ORTHO05D001485 8.3e-06 53.9 66 40.9
QL06p001881 Quercus lobata HOM05D001311 ORTHO05D001204 8.3e-06 53.9 51 45.1


User provided reference genes

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