Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 1.1e-201 706.4 357 100.0
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 3.7e-117 425.6 365 63.0
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 1.1e-113 414.1 364 58.8
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 5.5e-113 411.8 359 60.4
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 7.9e-112 407.9 364 59.3
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 1.8e-111 406.8 358 61.5
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 2.3e-111 406.4 331 62.2
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 6.7e-111 404.8 364 59.1
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 1.1e-108 397.5 365 60.0
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 8.8e-103 377.9 364 56.6
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 4.8e-101 372.1 358 53.6
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 2.4e-100 369.8 337 57.0
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 1.2e-99 367.5 338 56.8
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 1.1e-97 360.9 372 54.8
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 1.5e-97 360.5 362 55.2
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 3.2e-97 359.4 364 53.3
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 4.2e-97 359.0 358 51.1
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 1.6e-96 357.1 336 55.4
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 4.7e-96 355.5 338 56.2
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 1.4e-95 354.0 361 54.6
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 2.3e-95 353.2 361 53.5
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 5.2e-95 352.1 333 56.5
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 5.2e-95 352.1 343 54.2
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 8.8e-95 351.3 358 53.6
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 2.0e-94 350.1 354 52.3
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 9.8e-94 347.8 350 52.6
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 1.3e-93 347.4 343 53.6
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.7e-93 347.1 356 52.8
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 2.2e-93 346.7 363 52.9
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 2.8e-93 346.3 366 55.2
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 3.7e-93 345.9 346 52.9
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 4.8e-93 345.5 327 53.8
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 2.4e-92 343.2 344 54.7
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 7.0e-92 341.7 361 53.7
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 1.2e-91 340.9 360 50.8
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 1.6e-91 340.5 370 52.7
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.7e-91 339.7 375 50.1
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.7e-91 339.7 375 50.1
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.7e-91 339.7 375 50.1
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 1.0e-90 337.8 354 49.7
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 1.3e-90 337.4 366 52.7
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 1.3e-90 337.4 355 53.0
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 2.2e-90 336.7 375 49.3
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 6.5e-90 335.1 355 51.0
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 6.5e-90 335.1 349 52.1
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 2.8e-88 329.7 338 53.6
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 2.2e-85 320.1 349 50.7
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 1.1e-84 317.8 348 52.3
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 7.0e-84 315.1 347 49.6
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 2.0e-83 313.5 340 50.9
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 2.7e-83 313.2 363 49.6
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 2.9e-82 309.7 367 48.8
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 1.1e-81 307.8 374 47.9
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 2.8e-80 303.1 336 47.6
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 8.0e-80 301.6 358 45.0
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 8.0e-80 301.6 351 46.7
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 1.0e-79 301.2 337 47.5
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 1.8e-79 300.4 367 48.2
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 4.0e-79 299.3 335 46.0
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 5.2e-79 298.9 351 46.7
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 6.8e-79 298.5 322 47.5
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 1.2e-78 297.7 367 44.7
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 1.2e-78 297.7 333 46.2
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 4.4e-78 295.8 338 47.0
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 7.5e-78 295.0 344 47.7
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 2.2e-77 293.5 340 47.6
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 1.4e-76 290.8 342 48.2
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 1.4e-76 290.8 346 45.7
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 7.8e-75 285.0 363 44.4
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 2.8e-72 276.6 364 42.9
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 3.6e-72 276.2 359 43.5
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 3.6e-72 276.2 326 47.9
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 3.7e-69 266.2 337 45.4
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 3.7e-69 266.2 362 42.5
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 6.4e-69 265.4 325 44.9
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 8.3e-69 265.0 335 46.3
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 8.3e-69 265.0 335 46.3
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 8.3e-69 265.0 335 46.3
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 8.3e-69 265.0 299 49.5
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 1.4e-68 264.2 329 48.0
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 3.5e-67 259.6 335 44.2
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 2.3e-66 256.9 343 44.3
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 3.0e-66 256.5 319 43.9
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 3.0e-66 256.5 319 43.9
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 8.6e-66 255.0 356 43.8
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 7.3e-65 251.9 337 46.3
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 7.3e-65 251.9 364 41.8
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 9.5e-65 251.5 206 60.2
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 1.2e-64 251.1 220 58.6
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 1.6e-64 250.8 309 45.6
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 2.8e-64 250.0 328 47.6
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 2.3e-63 246.9 348 43.1
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 6.8e-63 245.4 338 41.1
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 4.4e-62 242.7 319 44.2
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 7.5e-62 241.9 260 53.1
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 1.3e-58 231.1 312 43.3
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 1.5e-57 227.6 343 41.7
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 1.6e-56 224.2 251 49.8
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 2.0e-54 217.2 334 39.5
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 3.9e-50 203.0 334 38.3
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 5.6e-49 199.1 336 38.1
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 1.4e-47 194.5 330 36.4
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 3.1e-47 193.4 329 36.8
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 4.9e-45 186.0 368 35.6
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 1.9e-41 174.1 265 42.3
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 6.9e-39 165.6 132 56.8
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 3.4e-38 163.3 196 45.9
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 7.6e-38 162.2 187 47.6
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 3.8e-37 159.8 170 50.6
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 4.6e-35 152.9 320 36.2
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 1.0e-34 151.8 156 49.4
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 5.1e-34 149.4 130 60.0
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 5.1e-34 149.4 306 34.3
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 1.8e-31 141.0 289 32.9
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 2.4e-28 130.6 102 57.8
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 1.6e-24 117.9 272 32.0
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 6.2e-24 115.9 94 56.4
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 9.0e-23 112.1 146 46.6
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 1.1e-20 105.1 129 48.1
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 1.9e-20 104.4 123 48.8
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 1.9e-20 104.4 123 48.8
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 4.2e-20 103.2 123 48.8
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 4.2e-20 103.2 123 48.8
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 1.2e-19 101.7 122 46.7
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 1.6e-19 101.3 112 45.5
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 1.6e-19 101.3 112 45.5
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 4.6e-19 99.8 123 49.6
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 2.3e-18 97.4 96 49.0
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 8.7e-18 95.5 186 35.5
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 9.7e-17 92.0 157 35.7
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 4.8e-16 89.7 99 49.5
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 2.4e-15 87.4 70 64.3
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 3.1e-15 87.0 79 51.9
BcaC07g42130 Brassica carinata HOM05D005574 ORTHO05D007102 5.3e-07 59.7 112 34.8


User provided reference genes

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