Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g03920 Coffea canephora HOM05D007633 ORTHO05D008817 5.6e-133 477.6 246 100.0
CSS0018565 Camellia sinensis var. sinensis HOM05D007633 ORTHO05D008817 7.0e-59 231.5 246 51.2
Hma1.2p1_0745F.1_g212150 Hydrangea macrophylla HOM05D007633 ORTHO05D008817 2.5e-56 223.0 246 52.8
Oeu011618.1 Olea europaea HOM05D007633 ORTHO05D008817 1.8e-54 216.9 216 51.9
Actinidia36954 Actinidia chinensis HOM05D007633 ORTHO05D008817 8.6e-49 198.0 244 46.7
Dinv14003 Davidia involucrata HOM05D007633 ORTHO05D008817 2.5e-48 196.4 228 47.4
Rhsim02G0025900 Rhododendron simsii HOM05D007633 ORTHO05D008817 2.5e-48 196.4 218 50.5
Haze_00885 Corylus avellana HOM05D007633 ORTHO05D008817 1.9e-43 180.3 268 42.2
Cfa015662 Carpinus fangiana HOM05D007633 ORTHO05D008817 2.4e-43 179.9 268 42.5
Potri.010G086300 Populus trichocarpa HOM05D007633 ORTHO05D008817 2.4e-43 179.9 247 44.9
MSTRG.21860 Avicennia marina HOM05D007633 ORTHO05D008817 4.6e-42 175.6 264 40.5
TAR636G0739 Trochodendron aralioides HOM05D007633 ORTHO05D008817 6.0e-42 175.3 246 43.1
Manes.03G177200 Manihot esculenta HOM05D007633 ORTHO05D008817 3.0e-41 172.9 252 42.1
Nn1g02349 Nelumbo nucifera HOM05D007633 ORTHO05D008817 1.1e-40 171.0 249 42.6
Gohir.A09G053600 Gossypium hirsutum HOM05D007633 ORTHO05D008817 1.5e-40 170.6 255 41.6
Thecc.04G233700 Theobroma cacao HOM05D007633 ORTHO05D008817 1.5e-40 170.6 251 41.0
Nitab4.5_0008118g0020 Nicotiana tabacum HOM05D007633 ORTHO05D008817 2.5e-40 169.9 248 41.5
Potri.008G154200 Populus trichocarpa HOM05D007633 ORTHO05D008817 3.3e-40 169.5 247 42.9
Atru.chr4.2449 Acer truncatum HOM05D007633 ORTHO05D008817 7.3e-40 168.3 262 40.8
QL06p002095 Quercus lobata HOM05D007633 ORTHO05D008817 1.6e-39 167.2 266 41.0
RcHm_v2.0_Chr4g0415951 Rosa chinensis HOM05D007633 ORTHO05D008817 1.6e-39 167.2 265 40.0
HanXRQChr02g0035611 Helianthus annuus HOM05D007633 ORTHO05D008817 2.1e-39 166.8 213 43.2
Gorai.006G055000 Gossypium raimondii HOM05D007633 ORTHO05D008817 2.3e-38 163.3 256 41.4
Sabra10G0057400 Salix brachista HOM05D007633 ORTHO05D008817 2.3e-38 163.3 247 42.1
Gohir.D09G053050 Gossypium hirsutum HOM05D007633 ORTHO05D008817 4.0e-38 162.5 250 42.0
CANSAT78G1135 Cannabis sativa HOM05D007633 ORTHO05D008817 6.8e-38 161.8 265 40.4
Glyma.11G006100 Glycine max HOM05D007633 ORTHO05D008817 2.6e-37 159.8 261 39.8
FAN02G3335 Fragaria x ananassa HOM05D007633 ORTHO05D008817 4.4e-37 159.1 269 37.9
Sopen09g031040 Solanum pennellii HOM05D007633 ORTHO05D008817 5.8e-37 158.7 221 42.1
Solyc09g082160.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 7.6e-37 158.3 222 41.9
Sopen06g019290 Solanum pennellii HOM05D007633 ORTHO05D008817 7.6e-37 158.3 171 49.7
Ciclev10005651m.g Citrus clementina HOM05D007633 ORTHO05D008817 9.9e-37 157.9 266 40.2
FAN22G0362 Fragaria x ananassa HOM05D007633 ORTHO05D008817 9.9e-37 157.9 269 37.9
Peaxi162Scf00192g01119 Petunia axillaris HOM05D007633 ORTHO05D008817 9.9e-37 157.9 244 41.8
Nitab4.5_0001342g0010 Nicotiana tabacum HOM05D007633 ORTHO05D008817 1.3e-36 157.5 245 39.2
PGSC0003DMG400032254 Solanum tuberosum HOM05D007633 ORTHO05D008817 1.7e-36 157.1 234 41.0
MELO3C006526.2 Cucumis melo HOM05D007633 ORTHO05D008817 1.1e-35 154.5 255 39.6
Migut.N00191 Erythranthe guttata HOM05D007633 ORTHO05D008817 1.1e-35 154.5 223 39.0
Prupe.1G015500 Prunus persica HOM05D007633 ORTHO05D008817 1.9e-35 153.7 163 49.7
Medtr5g006410 Medicago truncatula HOM05D007633 ORTHO05D008817 4.1e-35 152.5 237 38.8
CsaV3_3G013230 Cucumis sativus L. HOM05D007633 ORTHO05D008817 9.2e-35 151.4 258 39.5
FvH4_4g16290 Fragaria vesca HOM05D007633 ORTHO05D008817 1.2e-34 151.0 255 37.3
FAN12G0707 Fragaria x ananassa HOM05D007633 ORTHO05D008817 1.2e-34 151.0 255 37.3
GSVIVG01017995001 Vitis vinifera HOM05D007633 ORTHO05D008817 2.1e-34 150.2 247 40.1
vmacro15349 Vaccinium macrocarpon HOM05D007633 ORTHO05D008817 3.5e-34 149.4 253 38.3
MD16G1195500 Malus domestica HOM05D007633 ORTHO05D008817 4.6e-34 149.1 248 39.9
Psat4g209480 Pisum sativum HOM05D007633 ORTHO05D008817 1.3e-33 147.5 168 48.8
PGR004G0463 Punica granatum HOM05D007633 ORTHO05D008817 1.7e-33 147.1 238 38.7
Aqoxy2G03409 Aquilegia oxysepala HOM05D007633 ORTHO05D008817 2.3e-33 146.7 224 37.9
TWI73G0352 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 2.3e-33 146.7 255 37.3
Lsat_1_v5_gn_7_64401 Lactuca sativa HOM05D007633 ORTHO05D008817 3.0e-33 146.4 211 41.7
Solyc06g054140.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 3.0e-33 146.4 176 48.9
TPR.G38043 Trifolium pratense HOM05D007633 ORTHO05D008817 3.9e-33 146.0 246 38.2
Sed0010969 Sechium edule HOM05D007633 ORTHO05D008817 5.1e-33 145.6 238 38.2
LjContig00408g0001251 Lotus japonicus HOM05D007633 ORTHO05D008817 4.3e-32 142.5 276 37.0
Ca_24403_v3 Cicer arietinum L. HOM05D007633 ORTHO05D008817 5.6e-32 142.1 241 39.0
ECA240G3784 Erigeron canadensis HOM05D000137 ORTHO05D000452 7.3e-32 141.7 212 40.6
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 9.6e-32 141.4 254 37.4
SalBow3G0862 Salvia bowleyana HOM05D007633 ORTHO05D008817 3.6e-31 139.4 246 38.2
Glyma.01G237200 Glycine max HOM05D007633 ORTHO05D008817 8.1e-31 138.3 245 38.8
Eucgr.H03451 Eucalyptus grandis HOM05D007633 ORTHO05D008817 1.1e-30 137.9 277 35.4
Phvul.002G044600 Phaseolus vulgaris HOM05D007633 ORTHO05D008817 2.4e-30 136.7 259 34.0
Peaxi162Scf00092g00615 Petunia axillaris HOM05D007633 ORTHO05D008817 2.6e-29 133.3 256 37.5
Duzib212G0599 Durio zibethinus HOM05D007633 ORTHO05D008817 7.6e-29 131.7 175 45.1
ATR0697G107 Amborella trichopoda HOM05D007633 ORTHO05D008817 1.7e-28 130.6 229 36.2
Lalb_Chr01g0013131 Lupinus albus HOM05D007633 ORTHO05D008817 2.9e-28 129.8 231 38.1
Nitab4.5_0000321g0150 Nicotiana tabacum HOM05D007633 ORTHO05D008817 4.9e-28 129.0 251 38.6
Nitab4.5_0001920g0040 Nicotiana tabacum HOM05D007633 ORTHO05D008817 2.1e-26 123.6 196 38.3
VMungo1215G1793 Vigna mungo HOM05D007633 ORTHO05D008817 2.3e-25 120.2 267 33.3
Hund12119 Selenicereus undatus HOM05D007633 ORTHO05D008817 1.5e-24 117.5 228 36.0
PSO210G6592 Papaver somniferum HOM05D007633 ORTHO05D008817 3.3e-24 116.3 182 39.0
PSO210G0191 Papaver somniferum HOM05D007633 ORTHO05D008817 1.3e-23 114.4 245 35.9
PSO761G0485 Papaver somniferum HOM05D007633 ORTHO05D008817 1.8e-22 110.5 246 32.1
PSO761G0330 Papaver somniferum HOM05D007633 ORTHO05D008817 2.4e-22 110.2 246 34.1
HPP92_006116 Vanilla planifolia HOM05D007633 ORTHO05D008817 2.4e-22 110.2 247 30.4
Ah.04g154590 Amaranthus hybridus HOM05D007633 ORTHO05D008817 1.5e-21 107.5 241 34.0
CiPaw.01G167500 Carya illinoinensis HOM05D007633 ORTHO05D008817 1.5e-21 107.5 262 32.1
FAN07G1430 Fragaria x ananassa HOM05D007633 ORTHO05D008817 5.8e-21 105.5 203 35.0
THA.LOC104826165 Tarenaya hassleriana HOM05D012198 ORTHO05D008817 6.0e-18 95.5 245 31.8
AUR62034710 Chenopodium quinoa HOM05D007633 ORTHO05D008817 1.8e-17 94.0 150 36.7
CDE07G1037 Ceratophyllum demersum HOM05D007633 ORTHO05D008817 2.3e-17 93.6 147 39.5
ClCG05G005110 Citrullus lanatus HOM05D007633 ORTHO05D008817 5.1e-17 92.4 270 31.5
Lsat_1_v5_gn_8_155361 Lactuca sativa HOM05D007633 ORTHO05D008817 8.7e-17 91.7 119 41.2
PGSC0003DMG400016306 Solanum tuberosum HOM05D007633 ORTHO05D008817 4.3e-16 89.4 100 49.0
CARHR205340 Cardamine hirsuta HOM05D012198 ORTHO05D008817 2.1e-15 87.0 263 31.6
VMungo1215G1192 Vigna mungo HOM05D007633 ORTHO05D008817 8.1e-15 85.1 261 28.4
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 1.5e-13 80.9 249 29.3
AT1G05430 Arabidopsis thaliana HOM05D012198 ORTHO05D008817 2.6e-13 80.1 204 32.4
Carub.0001s0476 Capsella rubella HOM05D012198 ORTHO05D008817 2.6e-13 80.1 267 30.7
AL1G15270 Arabidopsis lyrata HOM05D012198 ORTHO05D008817 4.5e-13 79.3 217 29.0
Sp1g04300 Schrenkiella parvula HOM05D012198 ORTHO05D008817 4.5e-13 79.3 244 29.9
BcaB02g06861 Brassica carinata HOM05D012198 ORTHO05D008817 9.9e-13 78.2 216 30.1
Thhalv10008449m.g Eutrema salsugineum HOM05D012198 ORTHO05D008817 3.2e-11 73.2 260 28.1
arahy.Tifrunner.gnm1.ann1.5LNY8Z Arachis hypogaea HOM05D007633 ORTHO05D008817 2.1e-10 70.5 120 36.7
arahy.Tifrunner.gnm1.ann1.VQRK5I Arachis hypogaea HOM05D007633 ORTHO05D008817 4.6e-10 69.3 120 37.5
C05p03770 Brassica napus HOM05D012198 ORTHO05D008817 4.6e-10 69.3 224 29.0
BolC5t29154H Brassica oleracea HOM05D012198 ORTHO05D008817 4.6e-10 69.3 224 29.0
SEGI_17234 Sequoiadendron giganteum HOM05D007633 ORTHO05D008817 6.0e-10 68.9 162 32.1
MD13G1194600 Malus domestica HOM05D007633 ORTHO05D008817 7.9e-10 68.6 156 32.1
BcaC05g24387 Brassica carinata HOM05D012198 ORTHO05D008817 1.0e-09 68.2 224 28.1
A10p04130 Brassica napus HOM05D012198 ORTHO05D008817 1.0e-09 68.2 213 28.6
BraA10t42683Z Brassica rapa HOM05D012198 ORTHO05D008817 1.0e-09 68.2 213 28.6
Os10g0430800 Oryza sativa ssp. japonica HOM05D026697 ORTHO05D008817 1.5e-08 64.3 182 28.0
AUR62043551 Chenopodium quinoa HOM05D007633 ORTHO05D008817 2.1e-07 60.5 185 28.6
BcaC05g24389 Brassica carinata HOM05D012198 ORTHO05D008817 2.8e-07 60.1 136 30.9
Os10g0430700 Oryza sativa ssp. japonica HOM05D026697 ORTHO05D008817 3.7e-07 59.7 234 24.4
DCAR_030642 Daucus carota HOM05D007633 ORTHO05D008817 8.1e-07 58.5 127 35.4


User provided reference genes

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