Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g03840 Coffea canephora HOM05D007425 ORTHO05D009334 2.5e-93 345.5 187 100.0
Oeu031224.1 Olea europaea HOM05D007425 ORTHO05D009334 3.3e-32 142.5 186 54.8
Oeu031227.1 Olea europaea HOM05D007425 ORTHO05D009334 3.3e-32 142.5 186 54.8
Oeu031228.1 Olea europaea HOM05D007425 ORTHO05D009334 3.3e-32 142.5 186 54.8
Nitab4.5_0004258g0010 Nicotiana tabacum HOM05D007425 ORTHO05D009334 6.2e-31 138.3 194 51.0
DCAR_002385 Daucus carota HOM05D007425 ORTHO05D009334 8.9e-30 134.4 196 46.9
Dinv13997 Davidia involucrata HOM05D001000 ORTHO05D002976 2.0e-29 133.3 158 55.1
HanXRQChr08g0229221 Helianthus annuus HOM05D007425 ORTHO05D009334 4.4e-29 132.1 89 77.5
Rhsim04G0201800 Rhododendron simsii HOM05D007425 ORTHO05D009334 5.8e-29 131.7 182 52.2
Nn4g26476 Nelumbo nucifera HOM05D007425 ORTHO05D009334 1.3e-28 130.6 194 49.5
Sabra08G0117000 Salix brachista HOM05D007425 ORTHO05D009334 1.3e-28 130.6 185 51.9
Sp7g13010 Schrenkiella parvula HOM05D007425 ORTHO05D009334 1.3e-28 130.6 207 48.8
Duzib212G0056 Durio zibethinus HOM05D007425 ORTHO05D009334 2.2e-28 129.8 112 66.1
Sopen09g030940 Solanum pennellii HOM05D007425 ORTHO05D009334 2.9e-28 129.4 188 51.6
FAN13G1551 Fragaria x ananassa HOM05D007425 ORTHO05D009334 4.9e-28 128.6 180 51.1
RcHm_v2.0_Chr7g0190521 Rosa chinensis HOM05D007425 ORTHO05D009334 4.9e-28 128.6 187 48.7
Hma1.2p1_0275F.1_g110893 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 6.4e-28 128.3 93 72.0
Hma1.2p1_0275F.1_g110900 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 6.4e-28 128.3 93 72.0
Lj3P734T17 Lonicera japonica HOM05D007425 ORTHO05D009334 6.4e-28 128.3 188 49.5
PGR142G3696 Punica granatum HOM05D007425 ORTHO05D009334 6.4e-28 128.3 188 48.4
Potri.008G153400 Populus trichocarpa HOM05D007425 ORTHO05D009334 8.3e-28 127.9 183 48.6
SGA_v2.0_scaffold39G15229 Striga asiatica HOM05D007425 ORTHO05D009334 8.3e-28 127.9 191 47.6
MD16G1194500 Malus domestica HOM05D007425 ORTHO05D009334 1.1e-27 127.5 137 59.9
Duzib151G0901 Durio zibethinus HOM05D007425 ORTHO05D009334 2.4e-27 126.3 189 50.3
Prupe.1G014400 Prunus persica HOM05D007425 ORTHO05D009334 3.2e-27 125.9 138 60.1
THA.LOC104822268 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 3.2e-27 125.9 141 57.4
MELO3C006532.2 Cucumis melo HOM05D007425 ORTHO05D009334 4.1e-27 125.6 144 52.1
THA.LOC104803027 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 4.1e-27 125.6 140 55.7
TAR636G0682 Trochodendron aralioides HOM05D007425 ORTHO05D009334 5.4e-27 125.2 174 50.0
BraA01t02180Z Brassica rapa HOM05D007425 ORTHO05D009334 9.2e-27 124.4 166 53.0
CANSAT78G0262 Cannabis sativa HOM05D007425 ORTHO05D009334 9.2e-27 124.4 89 75.3
Haze_00892 Corylus avellana HOM05D007425 ORTHO05D009334 9.2e-27 124.4 182 48.9
LjContig00408g0025154 Lotus japonicus HOM05D007425 ORTHO05D009334 9.2e-27 124.4 99 67.7
Aa31LG9G2430 Aethionema arabicum HOM05D007425 ORTHO05D009334 1.2e-26 124.0 182 48.4
PGSC0003DMG400032277 Solanum tuberosum HOM05D007425 ORTHO05D009334 1.2e-26 124.0 187 49.2
Ah.14g089400 Amaranthus hybridus HOM05D007425 ORTHO05D009334 1.6e-26 123.6 178 49.4
MSTRG.24738 Avicennia marina HOM05D007425 ORTHO05D009334 1.6e-26 123.6 187 48.7
Cpa.g.sc9.287 Carica papaya HOM05D007425 ORTHO05D009334 1.6e-26 123.6 188 47.9
Glyma.01G237800 Glycine max HOM05D007425 ORTHO05D009334 1.6e-26 123.6 92 70.7
Psat2g124560 Pisum sativum HOM05D007425 ORTHO05D009334 1.6e-26 123.6 83 75.9
SalBow3G4464 Salvia bowleyana HOM05D007425 ORTHO05D009334 1.6e-26 123.6 166 48.8
Atru.chr4.2458 Acer truncatum HOM05D007425 ORTHO05D009334 2.0e-26 123.2 169 50.3
CSS0011351 Camellia sinensis var. sinensis HOM05D007425 ORTHO05D009334 2.7e-26 122.9 188 47.3
Cfa015652 Carpinus fangiana HOM05D007425 ORTHO05D009334 2.7e-26 122.9 186 45.2
CiPaw.01G166700 Carya illinoinensis HOM05D007425 ORTHO05D009334 2.7e-26 122.9 188 46.3
FAN04G2988 Fragaria x ananassa HOM05D007425 ORTHO05D009334 2.7e-26 122.9 173 51.4
QL06p002223 Quercus lobata HOM05D007425 ORTHO05D009334 2.7e-26 122.9 181 46.4
BcaC09g50166 Brassica carinata HOM05D007425 ORTHO05D009334 3.5e-26 122.5 142 56.3
BcaNung00324 Brassica carinata HOM05D007425 ORTHO05D009334 3.5e-26 122.5 174 52.3
C01p28260 Brassica napus HOM05D007425 ORTHO05D009334 3.5e-26 122.5 143 58.0
BolC1t02755H Brassica oleracea HOM05D007425 ORTHO05D009334 3.5e-26 122.5 142 56.3
COL.COLO4_21483 Corchorus olitorius HOM05D007425 ORTHO05D009334 3.5e-26 122.5 197 48.2
Sed0025719 Sechium edule HOM05D007425 ORTHO05D009334 3.5e-26 122.5 187 46.0
AT4G14870 Arabidopsis thaliana HOM05D007425 ORTHO05D009334 4.6e-26 122.1 91 74.7
Carub.0007s2724 Capsella rubella HOM05D007425 ORTHO05D009334 4.6e-26 122.1 91 75.8
CARHR221470 Cardamine hirsuta HOM05D007425 ORTHO05D009334 4.6e-26 122.1 145 55.2
Gohir.A09G216200 Gossypium hirsutum HOM05D007425 ORTHO05D009334 4.6e-26 122.1 181 49.2
Thecc.04G232500 Theobroma cacao HOM05D007425 ORTHO05D009334 4.6e-26 122.1 184 48.9
CsaV3_3G013300 Cucumis sativus L. HOM05D007425 ORTHO05D009334 6.0e-26 121.7 190 46.3
Migut.G00341 Erythranthe guttata HOM05D007425 ORTHO05D009334 6.0e-26 121.7 196 50.0
Phvul.002G045100 Phaseolus vulgaris HOM05D007425 ORTHO05D009334 6.0e-26 121.7 84 76.2
VMungo1215G1239 Vigna mungo HOM05D007425 ORTHO05D009334 7.8e-26 121.3 179 48.6
Gorai.006G239600 Gossypium raimondii HOM05D007425 ORTHO05D009334 1.0e-25 120.9 184 47.8
Sc13g0004450 Simmondsia chinensis HOM05D007425 ORTHO05D009334 1.0e-25 120.9 177 48.0
FvH4_5g07900 Fragaria vesca HOM05D007425 ORTHO05D009334 1.3e-25 120.6 172 51.7
FAN18G2754 Fragaria x ananassa HOM05D007425 ORTHO05D009334 1.3e-25 120.6 172 51.7
Nitab4.5_0000043g0080 Nicotiana tabacum HOM05D007425 ORTHO05D009334 1.7e-25 120.2 186 49.5
Sed0000110 Sechium edule HOM05D007425 ORTHO05D009334 1.7e-25 120.2 143 52.4
Lsat_1_v5_gn_9_18440 Lactuca sativa HOM05D007425 ORTHO05D009334 2.3e-25 119.8 187 43.9
MD13G1193800 Malus domestica HOM05D007425 ORTHO05D009334 5.0e-25 118.6 188 47.9
Gohir.D09G218600 Gossypium hirsutum HOM05D007425 ORTHO05D009334 1.5e-24 117.1 184 46.7
Eucgr.L01274 Eucalyptus grandis HOM05D007425 ORTHO05D009334 1.9e-24 116.7 129 55.8
Eucgr.B01085 Eucalyptus grandis HOM05D007425 ORTHO05D009334 3.3e-24 115.9 139 54.0
Aqoxy7G02632 Aquilegia oxysepala HOM05D007425 ORTHO05D009334 4.3e-24 115.5 69 84.1
CAN.G490.15 Capsicum annuum HOM05D007425 ORTHO05D009334 4.3e-24 115.5 75 78.7
ECA247G1832 Erigeron canadensis HOM05D007425 ORTHO05D009334 4.3e-24 115.5 93 66.7
AL7G40980 Arabidopsis lyrata HOM05D007425 ORTHO05D009334 7.3e-24 114.8 187 46.0
Eucgr.L02493 Eucalyptus grandis HOM05D007425 ORTHO05D009334 7.3e-24 114.8 194 44.3
unitig_32.g10818 Utricularia gibba HOM05D007425 ORTHO05D009334 9.5e-24 114.4 109 60.6
PSO170G1990 Papaver somniferum HOM05D007425 ORTHO05D009334 2.1e-23 113.2 167 47.3
Manes.03G178200 Manihot esculenta HOM05D007425 ORTHO05D009334 2.8e-23 112.8 180 45.0
Medtr5g038520 Medicago truncatula HOM05D007425 ORTHO05D009334 3.6e-23 112.5 166 45.8
PSO017G2433 Papaver somniferum HOM05D007425 ORTHO05D009334 3.6e-23 112.5 137 52.6
Thhalv10026366m.g Eutrema salsugineum HOM05D007425 ORTHO05D009334 6.2e-23 111.7 178 46.1
MBI16_g00841_MAGBIO Magnolia biondii HOM05D007425 ORTHO05D009334 2.3e-22 109.8 187 43.3
Ca_04746_v3 Cicer arietinum L. HOM05D007425 ORTHO05D009334 3.1e-22 109.4 76 76.3
AUR62033636 Chenopodium quinoa HOM05D007425 ORTHO05D009334 5.2e-22 108.6 153 47.7
CDE04G2079 Ceratophyllum demersum HOM05D007425 ORTHO05D009334 8.9e-22 107.8 67 74.6
ATR0626G045 Amborella trichopoda HOM05D007425 ORTHO05D009334 1.5e-21 107.1 63 81.0
EL10Ac3g06446 Beta vulgaris HOM05D007425 ORTHO05D009334 1.5e-21 107.1 170 47.6
arahy.Tifrunner.gnm1.ann1.CGGZ98 Arachis hypogaea HOM05D007425 ORTHO05D009334 2.0e-21 106.7 171 43.3
Ciclev10006055m.g Citrus clementina HOM05D007425 ORTHO05D009334 4.4e-21 105.5 71 76.1
TAR636G0596 Trochodendron aralioides HOM05D007425 ORTHO05D009334 1.3e-20 104.0 64 78.1
Zm00001eb375110 Zea mays HOM05D007425 ORTHO05D009334 1.3e-20 104.0 131 48.9
Lalb_Chr05g0211001 Lupinus albus HOM05D007425 ORTHO05D009334 1.1e-19 100.9 87 64.4
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 2.1e-18 96.7 85 61.2
HPP92_010419 Vanilla planifolia HOM05D007425 ORTHO05D009334 2.1e-18 96.7 123 49.6
Os04g0306750 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 6.6e-17 91.7 60 75.0
SEGI_06187 Sequoiadendron giganteum HOM05D007425 ORTHO05D009334 1.2e-15 87.4 63 68.3
Pp3c2_27330 Physcomitrium patens HOM05D007425 ORTHO05D009334 4.4e-13 79.0 113 45.1
Mapoly0070s0085 Marchantia polymorpha HOM05D007425 ORTHO05D009334 1.1e-11 74.3 114 43.9
Os08g0399050 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 2.1e-10 70.1 73 57.5
AUR62034746 Chenopodium quinoa HOM05D007425 ORTHO05D009334 5.1e-09 65.5 140 40.0
CDE07G0184 Ceratophyllum demersum HOM05D007425 ORTHO05D009334 1.9e-08 63.5 43 72.1
CBR_g18894 Chara braunii HOM05D007425 ORTHO05D009334 1.9e-08 63.5 52 57.7
SMO358G0357 Selaginella moellendorffii HOM05D013303 ORTHO05D015288 1.1e-06 57.8 155 32.9


User provided reference genes

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