Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 2.1e-121 439.1 228 100.0
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.8e-61 240.0 148 83.8
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.8e-61 240.0 148 83.8
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 3.1e-61 239.2 161 78.9
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 3.1e-61 239.2 148 83.1
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 1.2e-60 237.3 145 86.9
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 2.0e-60 236.5 146 86.3
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 5.9e-60 235.0 146 85.6
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 5.9e-60 235.0 146 87.0
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 1.0e-59 234.2 146 86.3
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 1.3e-59 233.8 142 85.2
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 1.3e-59 233.8 154 83.1
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 2.2e-59 233.0 146 85.6
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 3.8e-59 232.3 148 85.1
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 5.0e-59 231.9 149 83.9
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 5.0e-59 231.9 149 83.9
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 6.5e-59 231.5 145 82.8
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 6.5e-59 231.5 144 84.7
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 6.5e-59 231.5 145 85.5
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 8.5e-59 231.1 155 81.3
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 1.1e-58 230.7 152 81.6
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 1.1e-58 230.7 155 79.4
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 1.1e-58 230.7 148 80.4
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 1.5e-58 230.3 141 85.8
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 3.2e-58 229.2 144 84.0
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 4.2e-58 228.8 142 85.9
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 4.2e-58 228.8 142 85.2
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 5.5e-58 228.4 139 87.1
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 7.2e-58 228.0 139 86.3
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 1.6e-57 226.9 145 84.1
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 1.6e-57 226.9 139 87.1
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 1.6e-57 226.9 139 86.3
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 1.6e-57 226.9 139 86.3
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 1.6e-57 226.9 139 85.6
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 2.1e-57 226.5 136 86.8
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 3.6e-57 225.7 149 80.5
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 3.6e-57 225.7 192 69.3
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 4.7e-57 225.3 148 81.8
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 6.1e-57 224.9 142 84.5
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 6.1e-57 224.9 148 81.8
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 8.0e-57 224.6 148 81.8
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 8.0e-57 224.6 161 78.3
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 8.0e-57 224.6 152 78.3
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 1.0e-56 224.2 147 82.3
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.0e-56 224.2 146 82.2
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.0e-56 224.2 149 81.2
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 1.4e-56 223.8 140 85.0
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.4e-56 223.8 139 85.6
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 1.8e-56 223.4 148 81.1
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 3.0e-56 222.6 139 84.9
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 3.9e-56 222.2 146 80.8
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 3.9e-56 222.2 146 80.8
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 5.2e-56 221.9 171 74.9
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 5.2e-56 221.9 171 74.9
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 6.7e-56 221.5 139 85.6
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 6.7e-56 221.5 150 82.0
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 8.8e-56 221.1 149 81.2
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 8.8e-56 221.1 137 83.9
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 8.8e-56 221.1 146 80.8
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 2.0e-55 219.9 148 79.1
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 2.6e-55 219.5 139 82.7
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.3e-55 219.2 148 78.4
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 5.7e-55 218.4 139 83.5
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 7.4e-55 218.0 149 79.9
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 7.4e-55 218.0 147 77.6
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 9.7e-55 217.6 144 79.9
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 9.7e-55 217.6 137 82.5
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 1.3e-54 217.2 146 80.8
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 1.3e-54 217.2 141 82.3
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 1.3e-54 217.2 146 79.5
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.3e-54 217.2 145 80.7
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 1.7e-54 216.9 148 77.7
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 2.2e-54 216.5 150 81.3
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 2.8e-54 216.1 139 82.7
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 3.7e-54 215.7 137 80.3
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 3.7e-54 215.7 141 80.9
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 3.7e-54 215.7 148 80.4
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 4.8e-54 215.3 139 81.3
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 4.8e-54 215.3 139 81.3
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 6.3e-54 214.9 146 80.8
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 6.3e-54 214.9 146 78.8
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 6.3e-54 214.9 146 78.8
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 6.3e-54 214.9 146 78.1
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 8.2e-54 214.5 146 78.8
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 1.1e-53 214.2 147 78.9
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 1.4e-53 213.8 146 80.1
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 1.4e-53 213.8 148 78.4
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.8e-53 213.4 146 76.7
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 2.4e-53 213.0 146 80.1
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 2.4e-53 213.0 141 79.4
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 4.1e-53 212.2 135 83.7
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 9.1e-53 211.1 142 80.3
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 1.2e-52 210.7 141 79.4
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 1.2e-52 210.7 141 79.4
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 2.0e-52 209.9 140 77.9
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 2.0e-52 209.9 150 74.0
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 3.5e-52 209.1 124 87.9
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 5.9e-52 208.4 140 77.1
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 7.7e-52 208.0 140 77.1
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 7.7e-52 208.0 137 82.5
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 1.3e-51 207.2 145 78.6
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 5.0e-51 205.3 139 78.4
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 6.5e-51 204.9 142 76.8
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 9.4e-50 201.1 139 74.8
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 2.7e-49 199.5 144 71.5
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 4.7e-49 198.7 149 71.1
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.0e-48 197.6 139 74.1
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 1.4e-48 197.2 144 75.0
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 3.4e-47 192.6 139 71.9
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 3.4e-47 192.6 138 71.0
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 4.4e-47 192.2 140 71.4
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 5.7e-47 191.8 141 70.9
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 9.8e-47 191.0 139 71.2
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 9.8e-47 191.0 139 71.2
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 1.7e-46 190.3 134 73.1
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 2.2e-46 189.9 133 73.7
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 1.4e-45 187.2 138 70.3
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 2.4e-45 186.4 135 71.9
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 2.4e-45 186.4 135 71.9
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 2.4e-45 186.4 135 71.9
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 3.1e-45 186.0 139 70.5
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 3.1e-45 186.0 135 71.9
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 7.0e-45 184.9 133 72.2
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 2.7e-44 183.0 120 82.5
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 4.5e-44 182.2 116 82.8
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 2.2e-43 179.9 138 69.6
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 3.8e-43 179.1 138 69.6
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 4.2e-42 175.6 135 71.1
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 4.2e-42 175.6 135 71.1
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 5.5e-42 175.3 137 67.9
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 2.1e-41 173.3 141 62.4
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 6.1e-41 171.8 144 66.7
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 8.8e-40 167.9 138 64.5
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 1.2e-39 167.5 144 62.5
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 9.1e-37 157.9 136 63.2
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 2.5e-34 149.8 132 62.9
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 5.5e-34 148.7 134 60.4
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.8e-32 143.7 111 63.1
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.3e-30 137.5 136 55.9
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 5.2e-24 115.5 109 63.3
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 5.8e-23 112.1 134 44.0
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 7.5e-23 111.7 80 73.8
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 2.4e-21 106.7 95 62.1
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 1.3e-19 100.9 138 40.6
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 2.9e-14 83.2 86 50.0
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 1.2e-12 77.8 46 80.4


User provided reference genes

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