Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g03760 Coffea canephora HOM05D007072 ORTHO05D008841 5.9e-115 417.5 210 100.0
Dinv13993 Davidia involucrata HOM05D007072 ORTHO05D008841 1.1e-65 253.8 211 62.6
CSS0014065 Camellia sinensis var. sinensis HOM05D007072 ORTHO05D008841 1.6e-64 250.0 210 63.8
GSVIVG01017974001 Vitis vinifera HOM05D007072 ORTHO05D008841 2.1e-64 249.6 210 61.4
Haze_00902 Corylus avellana HOM05D007072 ORTHO05D008841 6.8e-63 244.6 183 67.2
Haze_03895 Corylus avellana HOM05D007072 ORTHO05D008841 1.3e-61 240.4 173 68.2
DCAR_030636 Daucus carota HOM05D007072 ORTHO05D008841 2.2e-61 239.6 165 72.1
Oeu031231.1 Olea europaea HOM05D007072 ORTHO05D008841 3.8e-61 238.8 173 69.9
Hma1.2p1_1344F.1_g277130 Hydrangea macrophylla HOM05D007072 ORTHO05D008841 1.4e-60 236.9 211 58.8
QL06p002505 Quercus lobata HOM05D007072 ORTHO05D008841 1.9e-60 236.5 185 62.2
CiPaw.01G165800 Carya illinoinensis HOM05D007072 ORTHO05D008841 2.4e-60 236.1 189 61.9
Eucgr.L01273 Eucalyptus grandis HOM05D007072 ORTHO05D008841 4.2e-60 235.3 171 70.8
Actinidia40146 Actinidia chinensis HOM05D007072 ORTHO05D008841 9.3e-60 234.2 182 63.7
COL.COLO4_04736 Corchorus olitorius HOM05D007072 ORTHO05D008841 9.3e-60 234.2 173 70.5
Atru.ctg752_3.79 Acer truncatum HOM05D007072 ORTHO05D008841 1.2e-59 233.8 183 66.7
Eucgr.L02492 Eucalyptus grandis HOM05D007072 ORTHO05D008841 3.5e-59 232.3 171 70.2
Ciclev10005922m.g Citrus clementina HOM05D007072 ORTHO05D008841 6.0e-59 231.5 171 68.4
MD16G1193700 Malus domestica HOM05D007072 ORTHO05D008841 6.0e-59 231.5 210 57.6
Prupe.1G013400 Prunus persica HOM05D007072 ORTHO05D008841 1.3e-58 230.3 189 63.5
Nn4g26321 Nelumbo nucifera HOM05D007072 ORTHO05D008841 2.3e-58 229.6 175 69.7
Lj3A735T48 Lonicera japonica HOM05D007072 ORTHO05D008841 2.5e-57 226.1 214 58.9
Manes.03G178700 Manihot esculenta HOM05D007072 ORTHO05D008841 2.5e-57 226.1 174 68.4
Thecc.04G231900 Theobroma cacao HOM05D007072 ORTHO05D008841 2.5e-57 226.1 172 68.0
Peaxi162Scf00092g01012 Petunia axillaris HOM05D007072 ORTHO05D008841 3.3e-57 225.7 173 68.8
PGR142G1968 Punica granatum HOM05D007072 ORTHO05D008841 1.6e-56 223.4 173 65.3
PGSC0003DMG400030078 Solanum tuberosum HOM05D007072 ORTHO05D008841 2.8e-56 222.6 194 61.3
ClCG06G006220 Citrullus lanatus HOM05D007072 ORTHO05D008841 4.8e-56 221.9 161 67.7
TWI09G0189 Tripterygium wilfordii HOM05D007072 ORTHO05D008841 4.8e-56 221.9 169 68.0
Sopen09g030860 Solanum pennellii HOM05D007072 ORTHO05D008841 6.2e-56 221.5 194 61.3
Gohir.A10G168700 Gossypium hirsutum HOM05D007072 ORTHO05D008841 8.1e-56 221.1 168 67.3
Rhsim04G0202300 Rhododendron simsii HOM05D007072 ORTHO05D008841 1.4e-55 220.3 167 64.7
Gorai.011G195700 Gossypium raimondii HOM05D007072 ORTHO05D008841 1.8e-55 219.9 168 66.7
Solyc09g076030.4 Solanum lycopersicum HOM05D007072 ORTHO05D008841 1.8e-55 219.9 194 60.8
RcHm_v2.0_Chr4g0416241 Rosa chinensis HOM05D007072 ORTHO05D008841 4.0e-55 218.8 211 57.3
Duzib212G0309 Durio zibethinus HOM05D007072 ORTHO05D008841 6.9e-55 218.0 167 68.3
Gohir.D10G174900 Gossypium hirsutum HOM05D007072 ORTHO05D008841 6.9e-55 218.0 168 66.7
Medtr1g103810 Medicago truncatula HOM05D007072 ORTHO05D008841 1.5e-54 216.9 169 66.9
Migut.G00337 Erythranthe guttata HOM05D007072 ORTHO05D008841 2.0e-54 216.5 212 57.1
CANSAT78G1446 Cannabis sativa HOM05D007072 ORTHO05D008841 2.6e-54 216.1 169 65.7
Phvul.007G057300 Phaseolus vulgaris HOM05D007072 ORTHO05D008841 2.6e-54 216.1 171 64.9
Nitab4.5_0000043g0120 Nicotiana tabacum HOM05D007072 ORTHO05D008841 3.4e-54 215.7 183 63.4
arahy.Tifrunner.gnm1.ann1.KKZ0LN Arachis hypogaea HOM05D007072 ORTHO05D008841 4.4e-54 215.3 174 64.9
VMungo0720G2696 Vigna mungo HOM05D007072 ORTHO05D008841 4.4e-54 215.3 211 56.4
CAN.G490.4 Capsicum annuum HOM05D007072 ORTHO05D008841 5.8e-54 214.9 174 64.9
Glyma.07G018200 Glycine max HOM05D007072 ORTHO05D008841 5.8e-54 214.9 171 64.9
TAR636G0958 Trochodendron aralioides HOM05D007072 ORTHO05D008841 5.8e-54 214.9 168 65.5
arahy.Tifrunner.gnm1.ann1.0J3LZT Arachis hypogaea HOM05D007072 ORTHO05D008841 7.6e-54 214.5 174 64.4
FvH4_4g15520 Fragaria vesca HOM05D007072 ORTHO05D008841 9.9e-54 214.2 201 56.7
FAN12G0870 Fragaria x ananassa HOM05D007072 ORTHO05D008841 9.9e-54 214.2 201 56.7
HanXRQChr03g0062521 Helianthus annuus HOM05D007072 ORTHO05D008841 1.3e-53 213.8 171 65.5
TPR.G5523 Trifolium pratense HOM05D007072 ORTHO05D008841 1.3e-53 213.8 212 58.0
Ca_10901_v3 Cicer arietinum L. HOM05D007072 ORTHO05D008841 1.7e-53 213.4 210 57.1
CsaV3_7G022520 Cucumis sativus L. HOM05D007072 ORTHO05D008841 2.2e-53 213.0 166 65.7
Lj5g0010864 Lotus japonicus HOM05D007072 ORTHO05D008841 3.8e-53 212.2 171 67.8
arahy.Tifrunner.gnm1.ann1.8ZA7N6 Arachis hypogaea HOM05D007072 ORTHO05D008841 4.9e-53 211.8 172 64.0
Potri.008G152800 Populus trichocarpa HOM05D007072 ORTHO05D008841 4.9e-53 211.8 183 63.4
Lsat_1_v5_gn_7_66201 Lactuca sativa HOM05D007072 ORTHO05D008841 6.4e-53 211.5 168 65.5
ATR0733G024 Amborella trichopoda HOM05D007072 ORTHO05D008841 1.1e-52 210.7 187 60.4
FAN07G0953 Fragaria x ananassa HOM05D007072 ORTHO05D008841 1.1e-52 210.7 201 55.7
MELO3C012648.2 Cucumis melo HOM05D007072 ORTHO05D008841 1.4e-52 210.3 166 65.1
ECA240G2950 Erigeron canadensis HOM05D007072 ORTHO05D008841 1.4e-52 210.3 171 64.9
THA.LOC104800963 Tarenaya hassleriana HOM05D007072 ORTHO05D008841 1.9e-52 209.9 193 60.6
Glyma.08G203200 Glycine max HOM05D007072 ORTHO05D008841 3.2e-52 209.1 171 63.2
Hund12130 Selenicereus undatus HOM05D007072 ORTHO05D008841 4.2e-52 208.8 174 62.6
Sc19g0004160 Simmondsia chinensis HOM05D007072 ORTHO05D008841 4.2e-52 208.8 167 63.5
SalBow2G0955 Salvia bowleyana HOM05D007072 ORTHO05D008841 7.1e-52 208.0 207 55.6
Sabra08G0116400 Salix brachista HOM05D007072 ORTHO05D008841 2.1e-51 206.5 218 54.6
Aa31LG1G19230 Aethionema arabicum HOM05D007072 ORTHO05D008841 3.5e-51 205.7 211 55.0
Rhsim04G0202400 Rhododendron simsii HOM05D007072 ORTHO05D008841 4.6e-51 205.3 179 59.8
BraA10t42680Z Brassica rapa HOM05D007072 ORTHO05D008841 6.0e-51 204.9 129 77.5
BolC5t29149H Brassica oleracea HOM05D007072 ORTHO05D008841 1.3e-50 203.8 201 54.7
Sed0002009 Sechium edule HOM05D007072 ORTHO05D008841 1.3e-50 203.8 141 70.9
BcaB02g06864 Brassica carinata HOM05D007072 ORTHO05D008841 1.7e-50 203.4 202 56.4
C05p03740 Brassica napus HOM05D007072 ORTHO05D008841 1.7e-50 203.4 201 54.7
Sp1g04270 Schrenkiella parvula HOM05D007072 ORTHO05D008841 2.3e-50 203.0 213 53.5
A10p04090 Brassica napus HOM05D007072 ORTHO05D008841 5.1e-50 201.8 129 76.7
unitig_32.g10817 Utricularia gibba HOM05D005563 ORTHO05D006667 6.6e-50 201.4 166 63.9
arahy.Tifrunner.gnm1.ann1.DZ7G8Z Arachis hypogaea HOM05D007072 ORTHO05D008841 8.7e-50 201.1 193 56.5
Thhalv10008840m.g Eutrema salsugineum HOM05D007072 ORTHO05D008841 1.1e-49 200.7 152 66.4
AT1G05385 Arabidopsis thaliana HOM05D007072 ORTHO05D008841 4.3e-49 198.7 215 55.3
PSO675G2050 Papaver somniferum HOM05D007072 ORTHO05D008841 1.3e-48 197.2 173 59.5
Psat6g207520 Pisum sativum HOM05D007072 ORTHO05D008841 1.6e-48 196.8 167 62.3
SGA_v2.0_scaffold124G33503 Striga asiatica HOM05D007072 ORTHO05D008841 1.6e-48 196.8 168 62.5
Carub.0001s0473 Capsella rubella HOM05D007072 ORTHO05D008841 2.1e-48 196.4 215 52.1
CARHR004900 Cardamine hirsuta HOM05D007072 ORTHO05D008841 2.1e-48 196.4 211 53.6
FAN22G0737 Fragaria x ananassa HOM05D007072 ORTHO05D008841 2.8e-48 196.1 157 63.1
Aqoxy5G00468 Aquilegia oxysepala HOM05D007072 ORTHO05D008841 3.6e-48 195.7 207 53.6
AL1G15220 Arabidopsis lyrata HOM05D007072 ORTHO05D008841 6.2e-48 194.9 215 53.5
Lalb_Chr02g0140581 Lupinus albus HOM05D007072 ORTHO05D008841 8.1e-48 194.5 145 67.6
EL10Ac2g03959 Beta vulgaris HOM05D007072 ORTHO05D008841 6.9e-47 191.4 167 60.5
PSO732G0121 Papaver somniferum HOM05D007072 ORTHO05D008841 2.0e-46 189.9 168 57.7
EL10Ac4g08230 Beta vulgaris HOM05D007072 ORTHO05D008841 3.4e-46 189.1 167 59.9
AUR62034750 Chenopodium quinoa HOM05D007072 ORTHO05D008841 1.3e-45 187.2 167 58.1
AUR62033624 Chenopodium quinoa HOM05D007072 ORTHO05D008841 4.9e-45 185.3 127 70.9
HPP92_001955 Vanilla planifolia HOM05D007072 ORTHO05D008841 1.4e-44 183.7 165 57.6
Ah.04g154560 Amaranthus hybridus HOM05D007072 ORTHO05D008841 4.2e-44 182.2 140 65.0
Actinidia27161 Actinidia chinensis HOM05D007072 ORTHO05D008841 3.9e-42 175.6 189 49.2
Zm00001eb214960 Zea mays HOM05D007072 ORTHO05D008841 2.1e-40 169.9 143 60.8
Os03g0747700 Oryza sativa ssp. japonica HOM05D007072 ORTHO05D008841 8.1e-40 167.9 144 62.5
Pp3c8_18010 Physcomitrium patens HOM05D007072 ORTHO05D008841 1.2e-35 154.1 173 49.7
Mapoly0045s0091 Marchantia polymorpha HOM05D007072 ORTHO05D008841 3.9e-34 149.1 140 56.4
Nitab4.5_0001560g0030 Nicotiana tabacum HOM05D007072 ORTHO05D008841 3.3e-33 146.0 137 57.7
CDE10G0502 Ceratophyllum demersum HOM05D007072 ORTHO05D008841 4.8e-32 142.1 101 67.3
SMO347G0486 Selaginella moellendorffii HOM05D007072 ORTHO05D008841 7.6e-30 134.8 134 50.0
SEGI_01006 Sequoiadendron giganteum HOM05D007072 ORTHO05D008841 1.9e-28 130.2 135 51.9
CBR_g41625 Chara braunii HOM05D007072 ORTHO05D008841 1.6e-27 127.1 143 44.1
RcHm_v2.0_Chr4g0430981 Rosa chinensis HOM05D007072 ORTHO05D008841 3.9e-26 122.5 112 58.9
MBI05_g43294_MAGBIO Magnolia biondii HOM05D007072 ORTHO05D008841 5.9e-22 108.6 70 74.3
AagrBONN_evm.TU.Sc2ySwM_228.1232 Anthoceros agrestis HOM05D007072 ORTHO05D008841 9.7e-17 91.3 110 45.5
MCO04G154 Micromonas commoda HOM05D007072 ORTHO05D008841 3.7e-08 62.8 171 29.2


User provided reference genes

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