Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 1.3e-34 149.1 68 100.0
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 2.6e-27 124.8 62 91.9
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 4.4e-27 124.0 62 88.7
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 1.1e-25 119.4 62 88.7
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 2.4e-25 118.2 63 85.7
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 5.3e-25 117.1 62 87.1
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 1.2e-24 115.9 62 87.1
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 2.6e-24 114.8 59 84.7
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 3.5e-24 114.4 62 85.5
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 3.5e-24 114.4 62 85.5
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 5.9e-24 113.6 64 84.4
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 5.9e-24 113.6 64 84.4
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 5.9e-24 113.6 64 84.4
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 5.9e-24 113.6 64 84.4
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 5.9e-24 113.6 62 82.3
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 5.9e-24 113.6 62 85.5
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 5.9e-24 113.6 62 85.5
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 7.7e-24 113.2 65 83.1
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 1.0e-23 112.8 62 85.5
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 1.0e-23 112.8 59 86.4
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 1.3e-23 112.5 60 85.0
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.3e-23 112.5 59 86.4
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 1.3e-23 112.5 64 82.8
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 1.7e-23 112.1 62 82.3
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 2.2e-23 111.7 62 82.3
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 2.2e-23 111.7 62 82.3
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 3.8e-23 110.9 56 87.5
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 3.8e-23 110.9 59 84.7
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 5.0e-23 110.5 58 89.7
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 5.0e-23 110.5 62 83.9
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 5.0e-23 110.5 65 80.0
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 5.0e-23 110.5 72 73.6
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 8.5e-23 109.8 67 79.1
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 8.5e-23 109.8 59 83.1
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 8.5e-23 109.8 65 78.5
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 8.5e-23 109.8 59 83.1
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 8.5e-23 109.8 59 83.1
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 1.1e-22 109.4 60 86.7
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 1.5e-22 109.0 60 81.7
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 1.5e-22 109.0 60 81.7
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 1.9e-22 108.6 65 80.0
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 1.9e-22 108.6 62 77.4
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 2.5e-22 108.2 59 81.4
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 2.5e-22 108.2 54 87.0
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 2.5e-22 108.2 62 79.0
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 2.5e-22 108.2 59 81.4
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 2.5e-22 108.2 63 84.1
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 3.2e-22 107.8 62 79.0
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 3.2e-22 107.8 58 84.5
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 4.2e-22 107.5 57 86.0
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 4.2e-22 107.5 57 86.0
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 5.5e-22 107.1 54 88.9
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 5.5e-22 107.1 60 85.0
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 7.2e-22 106.7 55 85.5
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 7.2e-22 106.7 57 84.2
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 9.4e-22 106.3 58 82.8
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 9.4e-22 106.3 59 81.4
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 1.2e-21 105.9 64 76.6
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 1.6e-21 105.5 60 78.3
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.6e-21 105.5 62 75.8
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 2.7e-21 104.8 62 75.8
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 3.6e-21 104.4 60 81.7
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 4.7e-21 104.0 64 75.0
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 4.7e-21 104.0 60 80.0
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 4.7e-21 104.0 60 80.0
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 4.7e-21 104.0 60 80.0
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 4.7e-21 104.0 59 79.7
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 8.0e-21 103.2 58 81.0
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 1.0e-20 102.8 63 77.8
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 1.4e-20 102.4 63 77.8
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.8e-20 102.1 57 84.2
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 1.8e-20 102.1 59 78.0
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 3.0e-20 101.3 61 77.0
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 4.0e-20 100.9 59 78.0
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 5.2e-20 100.5 62 74.2
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 6.8e-20 100.1 55 81.8
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 6.8e-20 100.1 55 81.8
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 1.2e-19 99.4 68 70.6
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.5e-19 99.0 57 77.2
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 2.6e-19 98.2 61 77.0
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 2.6e-19 98.2 59 79.7
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 3.4e-19 97.8 63 71.4
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 7.5e-19 96.7 61 75.4
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 9.7e-19 96.3 58 77.6
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 1.7e-18 95.5 61 73.8
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 1.7e-18 95.5 64 68.8
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 2.2e-18 95.1 58 75.9
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 2.2e-18 95.1 60 71.7
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 2.8e-18 94.7 61 75.4
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 4.8e-18 94.0 59 74.6
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 4.8e-18 94.0 53 79.2
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 4.8e-18 94.0 61 67.2
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 6.3e-18 93.6 58 74.1
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 8.3e-18 93.2 70 60.0
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.1e-17 92.8 59 72.9
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.1e-17 92.8 59 72.9
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.1e-17 92.8 59 72.9
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.1e-17 92.8 61 68.9
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 1.1e-17 92.8 65 69.2
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 1.1e-17 92.8 59 69.5
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.4e-17 91.7 59 69.5
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 2.4e-17 91.7 62 66.1
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 3.1e-17 91.3 53 75.5
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 5.3e-17 90.5 60 71.7
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 7.0e-17 90.1 58 67.2
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.0e-16 88.6 59 67.8
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 3.5e-16 87.8 70 65.7
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 3.5e-16 87.8 59 67.8
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 1.0e-15 86.3 52 73.1
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.7e-15 85.5 54 77.8
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 1.7e-15 85.5 53 73.6
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 8.5e-15 83.2 62 64.5
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 8.5e-15 83.2 55 69.1
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 1.1e-14 82.8 58 63.8
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 1.5e-14 82.4 58 63.8
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 1.9e-14 82.0 62 64.5
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 7.2e-14 80.1 64 65.6
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 1.2e-13 79.3 53 69.8
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 2.1e-13 78.6 46 78.3
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 2.1e-13 78.6 53 64.2
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 3.6e-13 77.8 63 63.5
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 8.0e-13 76.6 54 63.0
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 4.0e-12 74.3 54 64.8
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 2.8e-10 68.2 56 58.9
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.8e-09 65.5 44 68.2
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 2.4e-09 65.1 40 70.0
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 2.4e-09 65.1 52 57.7
Medtr5g006260 Medicago truncatula HOM05D006086 ORTHO05D007396 5.4e-09 63.9 78 42.3
Mapoly0080s0018 Marchantia polymorpha HOM05D006086 ORTHO05D007396 9.1e-09 63.2 58 44.8
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 2.7e-08 61.6 50 58.0
Pp3c4_16391 Physcomitrium patens HOM05D002570 ORTHO05D002689 5.9e-08 60.5 68 39.7
DCAR_012810 Daucus carota HOM05D002570 ORTHO05D002689 1.7e-07 58.9 50 46.0


User provided reference genes

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