Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 1.2e-116 423.3 243 100.0
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 2.7e-79 299.3 243 69.5
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.1e-77 293.9 243 69.5
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 1.5e-77 293.5 243 67.5
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 1.9e-77 293.1 243 69.1
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 5.6e-77 291.6 243 67.1
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 9.6e-77 290.8 242 66.9
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 9.6e-77 290.8 245 69.0
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 2.8e-76 289.3 243 67.9
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 3.7e-76 288.9 242 66.1
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 1.4e-75 287.0 244 68.4
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 2.4e-75 286.2 240 67.1
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 2.0e-74 283.1 248 66.9
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 5.8e-74 281.6 243 63.8
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 2.2e-73 279.6 243 70.8
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 2.9e-73 279.3 243 66.3
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 1.4e-72 276.9 244 69.7
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.6e-71 273.5 244 64.8
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 2.3e-70 269.6 250 62.8
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 3.0e-70 269.2 242 64.5
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 1.5e-69 266.9 243 64.2
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 3.3e-69 265.8 244 67.6
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 5.7e-69 265.0 243 68.7
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 1.3e-68 263.8 243 61.7
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 2.8e-68 262.7 244 60.7
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 2.8e-68 262.7 243 65.0
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 6.3e-68 261.5 246 63.8
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 8.2e-68 261.2 241 62.7
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 2.4e-67 259.6 248 63.7
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 4.1e-67 258.8 242 64.9
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 6.9e-67 258.1 255 63.1
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 9.0e-67 257.7 235 61.3
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 1.0e-65 254.2 240 62.5
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.9e-65 252.7 242 62.8
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 3.8e-65 252.3 256 62.1
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 2.5e-64 249.6 251 61.0
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.2e-63 247.3 224 64.7
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 3.6e-63 245.7 248 59.3
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 4.6e-63 245.4 241 61.8
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 1.0e-62 244.2 246 60.6
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 1.0e-62 244.2 243 58.8
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 5.1e-62 241.9 244 60.2
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 8.8e-62 241.1 249 60.2
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 9.7e-61 237.7 255 58.4
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 1.3e-60 237.3 247 59.5
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 1.3e-60 237.3 245 60.4
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 1.7e-60 236.9 256 57.4
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 2.8e-60 236.1 241 60.6
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 4.8e-60 235.3 239 60.3
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 4.8e-60 235.3 169 75.1
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 4.8e-60 235.3 259 56.4
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 6.3e-60 235.0 242 61.2
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 8.2e-60 234.6 270 57.4
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 8.2e-60 234.6 240 52.9
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 1.1e-59 234.2 255 58.0
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 1.4e-59 233.8 286 60.5
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 1.4e-59 233.8 248 58.9
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 2.4e-59 233.0 244 58.6
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 4.1e-59 232.3 247 57.9
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 6.9e-59 231.5 257 56.8
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 9.1e-59 231.1 231 60.6
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 1.5e-58 230.3 241 57.3
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.5e-58 230.3 247 61.5
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 2.0e-58 229.9 249 57.8
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 2.0e-58 229.9 249 58.2
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 2.6e-58 229.6 247 55.1
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 7.7e-58 228.0 241 58.9
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 1.0e-57 227.6 170 69.4
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 2.9e-57 226.1 249 59.8
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.4e-56 223.8 249 59.0
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 7.2e-56 221.5 249 58.6
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 7.9e-55 218.0 230 53.9
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 1.0e-54 217.6 238 56.3
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 1.0e-54 217.6 200 64.0
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 2.3e-54 216.5 243 55.1
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 3.0e-54 216.1 237 52.7
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 3.9e-54 215.7 269 55.4
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 9.7e-53 211.1 263 52.5
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 2.0e-50 203.4 262 52.3
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 1.3e-49 200.7 241 53.9
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 7.2e-48 194.9 284 50.7
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 9.4e-48 194.5 261 51.3
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 1.6e-47 193.7 248 54.8
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 2.1e-47 193.4 250 54.4
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 4.7e-47 192.2 239 53.6
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 8.0e-47 191.4 241 52.3
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 8.0e-47 191.4 242 50.0
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 3.9e-46 189.1 220 54.1
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 6.7e-46 188.3 268 47.4
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 6.7e-46 188.3 246 47.6
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 2.6e-45 186.4 235 49.4
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 5.7e-45 185.3 238 45.4
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 4.8e-44 182.2 247 49.0
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 4.8e-44 182.2 257 49.8
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 1.6e-42 177.2 242 51.2
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 2.0e-42 176.8 228 49.1
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 2.6e-42 176.4 228 49.1
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 1.3e-41 174.1 238 46.2
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 2.2e-41 173.3 277 43.3
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 6.5e-41 171.8 232 47.0
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 6.5e-41 171.8 214 53.3
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 1.5e-40 170.6 232 49.1
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 1.5e-40 170.6 232 49.1
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 1.9e-40 170.2 238 44.1
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 1.8e-38 163.7 243 44.4
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 2.3e-38 163.3 256 46.9
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 6.8e-38 161.8 257 46.7
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 1.5e-37 160.6 232 47.8
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 2.0e-37 160.2 241 47.7
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 3.4e-37 159.5 174 56.3
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 7.5e-37 158.3 252 47.6
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 3.1e-35 152.9 236 49.6
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 7.0e-35 151.8 232 43.1
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 1.6e-34 150.6 231 46.8
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 2.7e-34 149.8 247 44.9
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 2.7e-34 149.8 232 46.6
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 2.7e-34 149.8 260 43.5
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 3.5e-34 149.4 161 50.3
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 5.9e-34 148.7 228 46.1
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 1.7e-33 147.1 230 46.5
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 2.9e-33 146.4 245 46.5
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 3.8e-33 146.0 264 42.8
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 3.8e-33 146.0 264 42.8
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 8.5e-33 144.8 271 44.3
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 2.5e-32 143.3 266 42.1
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 2.5e-32 143.3 266 42.1
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 4.7e-31 139.0 181 54.1
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 2.3e-30 136.7 260 41.5
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 6.3e-28 128.6 245 43.3
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 1.4e-27 127.5 253 41.1
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 1.8e-27 127.1 152 50.7
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 2.0e-26 123.6 254 44.9
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 4.5e-26 122.5 266 38.7
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 2.3e-25 120.2 242 38.0
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 3.3e-24 116.3 255 39.2
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 4.2e-24 115.9 172 44.8
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 2.1e-23 113.6 250 38.4
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 3.0e-22 109.8 96 58.3
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.2e-21 107.8 155 46.5
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 4.9e-20 102.4 96 56.2
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 6.6e-17 92.0 95 66.3
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 2.3e-14 83.6 150 38.7
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 3.9e-09 66.2 157 35.0
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 6.6e-09 65.5 104 38.5
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 1.1e-08 64.7 152 34.2
Potri.007G042600 Populus trichocarpa HOM05D002458 ORTHO05D002603 5.6e-08 62.4 157 32.5
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 7.3e-08 62.0 139 35.3
Manes.12G102900 Manihot esculenta HOM05D002458 ORTHO05D002603 9.5e-08 61.6 157 32.5
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 9.5e-08 61.6 211 28.0
Actinidia16500 Actinidia chinensis HOM05D002458 ORTHO05D002603 1.2e-07 61.2 149 34.9
Nn1g06084 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.2e-07 61.2 53 54.7
Solyc02g065020.2 Solanum lycopersicum HOM05D002458 ORTHO05D002603 1.2e-07 61.2 139 35.3
Nn5g30245 Nelumbo nucifera HOM05D002458 ORTHO05D002603 1.6e-07 60.8 152 34.9
TAR376G0738 Trochodendron aralioides HOM05D002458 ORTHO05D002603 1.6e-07 60.8 147 32.7
Sopen02g015150 Solanum pennellii HOM05D002458 ORTHO05D002603 3.6e-07 59.7 139 35.3
GSVIVG01022142001 Vitis vinifera HOM05D002458 ORTHO05D002603 4.7e-07 59.3 157 32.5
PGSC0003DMG400025476 Solanum tuberosum HOM05D002458 ORTHO05D002603 6.2e-07 58.9 139 33.8
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 8.0e-07 58.5 142 33.8
MBI06_g24647_MAGBIO Magnolia biondii HOM05D002458 ORTHO05D002603 1.4e-06 57.8 155 33.5
Sabra07G0037800 Salix brachista HOM05D002458 ORTHO05D002603 8.9e-06 55.1 158 32.3


User provided reference genes

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