Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g03240 Coffea canephora HOM05D008368 ORTHO05D010489 7.9e-18 93.2 65 100.0
CiPaw.01G161200 Carya illinoinensis HOM05D008368 ORTHO05D010489 4.2e-11 70.9 40 85.0
Sc13g0004110 Simmondsia chinensis HOM05D008368 ORTHO05D010489 1.2e-10 69.3 41 80.5
Prupe.1G152900 Prunus persica HOM05D008368 ORTHO05D010489 4.6e-10 67.4 39 84.6
EL10Ac3g06405 Beta vulgaris HOM05D008368 ORTHO05D010489 6.1e-10 67.0 40 80.0
EL10Ac3g06406 Beta vulgaris HOM05D008368 ORTHO05D010489 6.1e-10 67.0 40 80.0
CSS0036726 Camellia sinensis var. sinensis HOM05D008368 ORTHO05D010489 6.1e-10 67.0 39 82.1
AUR62038060 Chenopodium quinoa HOM05D008368 ORTHO05D010489 1.3e-09 65.9 40 80.0
AUR62038186 Chenopodium quinoa HOM05D008368 ORTHO05D010489 1.3e-09 65.9 40 80.0
MELO3C006556.2 Cucumis melo HOM05D008368 ORTHO05D010489 3.0e-09 64.7 39 76.9
SalBow2G2001 Salvia bowleyana HOM05D008368 ORTHO05D010489 3.0e-09 64.7 42 76.2
unitig_32.g10803 Utricularia gibba HOM05D008368 ORTHO05D010489 3.0e-09 64.7 39 79.5
Migut.G00302 Erythranthe guttata HOM05D008368 ORTHO05D010489 3.9e-09 64.3 42 73.8
Actinidia08510 Actinidia chinensis HOM05D008368 ORTHO05D010489 5.1e-09 63.9 39 84.6
arahy.Tifrunner.gnm1.ann1.121ATL Arachis hypogaea HOM05D008368 ORTHO05D010489 6.7e-09 63.5 38 76.3
arahy.Tifrunner.gnm1.ann1.IPV0IY Arachis hypogaea HOM05D008368 ORTHO05D010489 6.7e-09 63.5 38 76.3
FvH4_4g14770 Fragaria vesca HOM05D008368 ORTHO05D010489 1.1e-08 62.8 39 79.5
FAN07G1534 Fragaria x ananassa HOM05D008368 ORTHO05D010489 1.1e-08 62.8 39 79.5
FAN17G1872 Fragaria x ananassa HOM05D008368 ORTHO05D010489 1.1e-08 62.8 39 79.5
Glyma.13G207400 Glycine max HOM05D008368 ORTHO05D010489 1.1e-08 62.8 36 77.8
CsaV3_3G013620 Cucumis sativus L. HOM05D008368 ORTHO05D010489 1.5e-08 62.4 39 76.9
MD13G1185300 Malus domestica HOM05D008368 ORTHO05D010489 1.5e-08 62.4 32 93.8
Potri.008G203800 Populus trichocarpa HOM05D008368 ORTHO05D010489 1.5e-08 62.4 40 72.5
THA.LOC104818801 Tarenaya hassleriana HOM05D008368 ORTHO05D010489 1.5e-08 62.4 40 75.0
Sed0011273 Sechium edule HOM05D008368 ORTHO05D010489 1.9e-08 62.0 39 76.9
Ca_00633_v3 Cicer arietinum L. HOM05D008368 ORTHO05D010489 2.5e-08 61.6 37 73.0
Medtr2g022540 Medicago truncatula HOM05D008368 ORTHO05D010489 2.5e-08 61.6 37 75.7
Phvul.006G152200 Phaseolus vulgaris HOM05D008368 ORTHO05D010489 3.3e-08 61.2 36 75.0
Lsat_1_v5_gn_7_68141 Lactuca sativa HOM05D008368 ORTHO05D010489 4.3e-08 60.8 39 79.5
Psat1g182840 Pisum sativum HOM05D008368 ORTHO05D010489 4.3e-08 60.8 41 68.3
TPR.G30686 Trifolium pratense HOM05D008368 ORTHO05D010489 4.3e-08 60.8 37 73.0
TPR.G40572 Trifolium pratense HOM05D008368 ORTHO05D010489 4.3e-08 60.8 37 73.0
FAN22G0200 Fragaria x ananassa HOM05D008368 ORTHO05D010489 5.7e-08 60.5 39 74.4
ClCG05G005370 Citrullus lanatus HOM05D008368 ORTHO05D010489 7.4e-08 60.1 39 74.4
Aa31LG11G10480 Aethionema arabicum HOM05D008368 ORTHO05D010489 1.6e-07 58.9 42 66.7
Ah.13g074090 Amaranthus hybridus HOM05D008368 ORTHO05D010489 1.6e-07 58.9 34 79.4
Ca_00655_v3 Cicer arietinum L. HOM05D008368 ORTHO05D010489 1.6e-07 58.9 37 70.3
vmacro15316 Vaccinium macrocarpon HOM05D008368 ORTHO05D010489 1.6e-07 58.9 31 90.3
Sopen01g031610 Solanum pennellii HOM05D008368 ORTHO05D010489 2.8e-07 58.2 42 66.7
BcaB05g23374 Brassica carinata HOM05D008368 ORTHO05D010489 3.7e-07 57.8 40 67.5
BcaC03g13647 Brassica carinata HOM05D008368 ORTHO05D010489 3.7e-07 57.8 40 67.5
A02p05280 Brassica napus HOM05D008368 ORTHO05D010489 3.7e-07 57.8 40 67.5
C02p10400 Brassica napus HOM05D008368 ORTHO05D010489 3.7e-07 57.8 40 67.5
BolC2t06941H Brassica oleracea HOM05D008368 ORTHO05D010489 3.7e-07 57.8 40 67.5
BraA02t05486Z Brassica rapa HOM05D008368 ORTHO05D010489 3.7e-07 57.8 40 67.5
Thecc.04G224200 Theobroma cacao HOM05D008368 ORTHO05D010489 3.7e-07 57.8 40 67.5
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 4.8e-07 57.4 40 62.5
TPR.G40393 Trifolium pratense HOM05D008368 ORTHO05D010489 4.8e-07 57.4 37 70.3
AL6G30580 Arabidopsis lyrata HOM05D008368 ORTHO05D010489 6.3e-07 57.0 40 67.5
AT5G19151 Arabidopsis thaliana HOM05D008368 ORTHO05D010489 6.3e-07 57.0 40 67.5
Carub.0006s1749 Capsella rubella HOM05D008368 ORTHO05D010489 6.3e-07 57.0 40 67.5
Thhalv10016117m.g Eutrema salsugineum HOM05D008368 ORTHO05D010489 6.3e-07 57.0 40 67.5
Os05g0532800 Oryza sativa ssp. japonica HOM05D038576 ORTHO05D010489 8.2e-07 56.6 39 64.1
Zm00001eb353800 Zea mays HOM05D038576 ORTHO05D010489 8.2e-07 56.6 36 69.4
CARHR193790 Cardamine hirsuta HOM05D008368 ORTHO05D010489 1.1e-06 56.2 40 65.0
RcHm_v2.0_Chr0c32g0501461 Rosa chinensis HOM05D008368 ORTHO05D010489 1.1e-06 56.2 30 90.0
RcHm_v2.0_Chr0c32g0501651 Rosa chinensis HOM05D008368 ORTHO05D010489 1.1e-06 56.2 30 90.0
VMungo0540G0881 Vigna mungo HOM05D008368 ORTHO05D010489 1.8e-06 55.5 31 77.4
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 2.4e-06 55.1 39 64.1
DCAR_002404 Daucus carota HOM05D008368 ORTHO05D010489 4.1e-06 54.3 34 73.5


User provided reference genes

Program Settings