Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 3.1e-218 761.5 390 100.0
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 3.6e-142 508.8 393 67.7
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 3.4e-140 502.3 392 67.9
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 7.5e-140 501.1 392 67.3
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 2.9e-139 499.2 387 67.4
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 8.3e-139 497.7 392 67.3
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 5.4e-138 495.0 375 69.6
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 2.1e-137 493.0 426 62.7
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.3e-136 490.3 389 66.1
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 8.6e-136 487.6 364 70.3
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 1.5e-135 486.9 391 65.0
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 1.4e-133 480.3 364 68.1
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 8.9e-133 477.6 388 63.4
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 1.7e-131 473.4 389 66.8
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 3.7e-131 472.2 393 64.6
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 2.4e-130 469.5 399 62.4
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 4.1e-130 468.8 393 64.6
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 7.1e-130 468.0 370 65.4
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 2.7e-129 466.1 361 67.9
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 6.0e-129 464.9 385 63.6
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 7.8e-129 464.5 388 62.6
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 3.0e-128 462.6 376 63.8
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 8.6e-128 461.1 339 70.5
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 1.1e-127 460.7 387 62.8
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 9.6e-127 457.6 367 64.6
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 6.2e-126 454.9 378 63.0
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 6.2e-126 454.9 329 69.6
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 1.1e-125 454.1 331 69.5
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 2.4e-125 453.0 371 65.0
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 3.1e-125 452.6 376 63.0
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 4.0e-125 452.2 340 67.1
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 8.9e-125 451.1 332 68.1
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 1.5e-124 450.3 366 67.2
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 1.5e-124 450.3 330 67.9
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 5.8e-124 448.4 332 69.6
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 1.7e-123 446.8 337 68.5
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 3.8e-123 445.7 362 63.8
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 4.9e-123 445.3 362 64.1
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 4.9e-123 445.3 340 68.8
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 1.4e-122 443.7 340 64.7
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 3.2e-122 442.6 335 66.3
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 3.2e-122 442.6 337 65.0
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 7.1e-122 441.4 330 65.8
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 2.7e-121 439.5 330 66.4
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 2.7e-121 439.5 316 68.7
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 3.5e-121 439.1 375 62.7
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 3.5e-121 439.1 380 62.4
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 4.6e-121 438.7 340 65.0
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 7.8e-121 438.0 316 71.8
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 1.7e-120 436.8 352 64.5
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 2.3e-120 436.4 319 70.2
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 3.0e-120 436.0 340 64.7
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 3.9e-120 435.6 345 64.3
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 6.6e-120 434.9 376 61.4
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 1.5e-119 433.7 337 63.8
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 1.9e-119 433.3 376 61.2
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 2.5e-119 433.0 322 66.5
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 5.6e-119 431.8 333 65.5
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 3.6e-118 429.1 369 61.0
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 6.2e-118 428.3 368 61.4
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 4.0e-117 425.6 336 63.7
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 6.9e-117 424.9 387 59.4
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 2.6e-116 422.9 376 59.0
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 5.8e-116 421.8 370 59.7
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 7.6e-116 421.4 338 65.7
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 7.6e-116 421.4 397 57.2
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 7.6e-116 421.4 336 64.3
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 2.9e-115 419.5 329 64.7
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 3.8e-115 419.1 393 58.0
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 1.4e-114 417.2 372 58.9
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 1.9e-114 416.8 337 62.9
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 3.2e-114 416.0 387 58.4
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 3.2e-114 416.0 387 58.4
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 2.7e-113 412.9 387 57.9
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 3.3e-111 406.0 391 58.1
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 1.6e-110 403.7 322 64.0
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 2.1e-110 403.3 387 56.8
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 6.2e-110 401.7 387 56.6
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.5e-108 397.1 323 63.5
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 2.0e-108 396.7 324 65.1
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 2.7e-105 386.3 357 60.2
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 3.9e-104 382.5 327 63.0
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 6.7e-104 381.7 313 62.6
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 7.4e-103 378.3 330 59.1
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 4.8e-102 375.6 329 58.4
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 8.1e-102 374.8 330 59.1
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 8.1e-102 374.8 350 56.9
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 3.4e-100 369.4 256 71.5
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 9.3e-98 361.3 321 59.5
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 1.0e-96 357.8 319 58.6
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 8.7e-96 354.8 249 72.3
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 3.3e-95 352.8 274 65.0
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 4.1e-93 345.9 228 76.3
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 4.5e-92 342.4 338 52.1
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 5.5e-90 335.5 313 60.1
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 9.3e-90 334.7 375 53.6
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 8.7e-88 328.2 266 63.9
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 3.1e-85 319.7 291 60.1
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 5.9e-84 315.5 303 53.5
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 1.2e-81 307.8 339 47.8
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 1.0e-80 304.7 257 59.5
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 3.8e-75 286.2 198 73.2
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 9.4e-74 281.6 315 47.3
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 6.7e-72 275.4 250 58.8
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 1.1e-69 268.1 272 58.5
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 9.1e-69 265.0 186 68.8
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 7.7e-68 261.9 344 48.5
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 1.8e-64 250.8 179 71.5
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 1.3e-62 244.6 229 58.1
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 5.3e-61 239.2 253 55.3
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 1.7e-59 234.2 200 64.0
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 2.5e-58 230.3 159 72.3
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 3.1e-53 213.4 289 40.1
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 5.9e-44 182.6 280 38.2
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 3.0e-40 170.2 137 62.8
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 4.9e-38 162.9 297 32.3
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 2.4e-37 160.6 210 46.2
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 5.6e-34 149.4 224 46.4
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 2.4e-29 134.0 105 65.7
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 2.8e-25 120.6 84 77.4
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 8.1e-25 119.0 240 37.5
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.8e-24 117.9 84 75.0
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 2.6e-23 114.0 123 52.0
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 9.9e-15 85.5 62 66.1
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 5.2e-08 63.2 46 67.4


User provided reference genes

Program Settings