Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g02750 Coffea canephora HOM05D007586 ORTHO05D009554 2.9e-34 148.3 92 100.0
Actinidia00073 Actinidia chinensis HOM05D007586 ORTHO05D009554 3.7e-21 104.8 92 69.6
QL06p006198 Quercus lobata HOM05D007586 ORTHO05D009554 1.1e-20 103.2 55 89.1
Atru.chr4.2702 Acer truncatum HOM05D007586 ORTHO05D009554 1.4e-20 102.8 90 62.2
Haze_01009 Corylus avellana HOM05D007586 ORTHO05D009554 7.0e-20 100.5 59 81.4
Thecc.04G272400 Theobroma cacao HOM05D007586 ORTHO05D009554 9.1e-20 100.1 61 78.7
Manes.03G188100 Manihot esculenta HOM05D007586 ORTHO05D009554 1.2e-19 99.8 61 80.3
Potri.008G198500 Populus trichocarpa HOM05D007586 ORTHO05D009554 2.7e-19 98.6 61 75.4
Dinv38351 Davidia involucrata HOM05D007586 ORTHO05D009554 3.5e-19 98.2 89 68.5
Sabra08G0162000 Salix brachista HOM05D007586 ORTHO05D009554 4.5e-19 97.8 61 77.0
Gohir.D10G162600 Gossypium hirsutum HOM05D007586 ORTHO05D009554 7.7e-19 97.1 82 62.2
Gorai.011G181700 Gossypium raimondii HOM05D007586 ORTHO05D009554 7.7e-19 97.1 82 62.2
Hma1.2p1_2025F.1_g311520 Hydrangea macrophylla HOM05D007586 ORTHO05D009554 7.7e-19 97.1 56 76.8
GSVIVG01017851001 Vitis vinifera HOM05D007586 ORTHO05D009554 7.7e-19 97.1 58 75.9
ClCG06G005620 Citrullus lanatus HOM05D007586 ORTHO05D009554 1.3e-18 96.3 62 77.4
Gohir.A10G105800 Gossypium hirsutum HOM05D007586 ORTHO05D009554 1.3e-18 96.3 55 83.6
Medtr2g020920 Medicago truncatula HOM05D007586 ORTHO05D009554 1.3e-18 96.3 60 70.0
CSS0032912 Camellia sinensis var. sinensis HOM05D007586 ORTHO05D009554 1.7e-18 95.9 61 75.4
PSO832G2949 Papaver somniferum HOM05D007586 ORTHO05D009554 2.2e-18 95.5 61 72.1
CsaV3_6G005530 Cucumis sativus L. HOM05D007586 ORTHO05D009554 2.9e-18 95.1 62 75.8
Duzib151G0133 Durio zibethinus HOM05D007586 ORTHO05D009554 2.9e-18 95.1 61 72.1
PSO210G0926 Papaver somniferum HOM05D007586 ORTHO05D009554 2.9e-18 95.1 61 72.1
Potri.010G028000 Populus trichocarpa HOM05D007586 ORTHO05D009554 2.9e-18 95.1 61 75.4
CiPaw.02G089500 Carya illinoinensis HOM05D007586 ORTHO05D009554 3.8e-18 94.7 84 61.9
Sed0005131 Sechium edule HOM05D007586 ORTHO05D009554 3.8e-18 94.7 61 77.0
Lj6g0006659 Lotus japonicus HOM05D007586 ORTHO05D009554 5.0e-18 94.4 58 74.1
Lalb_Chr18g0055891 Lupinus albus HOM05D007586 ORTHO05D009554 5.0e-18 94.4 58 70.7
THA.LOC104802735 Tarenaya hassleriana HOM05D007586 ORTHO05D009554 5.0e-18 94.4 54 81.5
COL.COLO4_13963 Corchorus olitorius HOM05D007586 ORTHO05D009554 6.5e-18 94.0 61 73.8
Nn4g26123 Nelumbo nucifera HOM05D007586 ORTHO05D009554 6.5e-18 94.0 60 71.7
Cfa015540 Carpinus fangiana HOM05D007586 ORTHO05D009554 8.5e-18 93.6 59 74.6
Sopen01g032230 Solanum pennellii HOM05D007586 ORTHO05D009554 8.5e-18 93.6 61 72.1
Ah.04g150810 Amaranthus hybridus HOM05D007586 ORTHO05D009554 1.1e-17 93.2 58 74.1
DCAR_027132 Daucus carota HOM05D007586 ORTHO05D009554 1.1e-17 93.2 55 76.4
TPR.G18017 Trifolium pratense HOM05D007586 ORTHO05D009554 1.5e-17 92.8 59 67.8
unitig_749.g14058 Utricularia gibba HOM05D007586 ORTHO05D009554 1.5e-17 92.8 55 76.4
vmacro15289 Vaccinium macrocarpon HOM05D007586 ORTHO05D009554 1.9e-17 92.4 92 54.3
Cpa.g.sc16.72 Carica papaya HOM05D007586 ORTHO05D009554 2.5e-17 92.0 55 74.5
EL10Ac3g07262 Beta vulgaris HOM05D007586 ORTHO05D009554 3.2e-17 91.7 55 74.5
Migut.G00284 Erythranthe guttata HOM05D007586 ORTHO05D009554 3.2e-17 91.7 86 64.0
Sp6g25470 Schrenkiella parvula HOM05D007586 ORTHO05D009554 4.2e-17 91.3 53 79.2
arahy.Tifrunner.gnm1.ann1.5VHG73 Arachis hypogaea HOM05D007586 ORTHO05D009554 5.5e-17 90.9 61 68.9
arahy.Tifrunner.gnm1.ann1.SH255N Arachis hypogaea HOM05D007586 ORTHO05D009554 7.2e-17 90.5 61 67.2
Glyma.15G100600 Glycine max HOM05D007586 ORTHO05D009554 7.2e-17 90.5 61 70.5
BcaB01g05279 Brassica carinata HOM05D007586 ORTHO05D009554 9.5e-17 90.1 53 77.4
C03p10700 Brassica napus HOM05D007586 ORTHO05D009554 9.5e-17 90.1 53 77.4
FvH4_4g16650 Fragaria vesca HOM05D007586 ORTHO05D009554 9.5e-17 90.1 57 71.9
FAN12G0362 Fragaria x ananassa HOM05D007586 ORTHO05D009554 9.5e-17 90.1 57 71.9
MBI19_g21636_MAGBIO Magnolia biondii HOM05D007586 ORTHO05D009554 9.5e-17 90.1 60 70.0
BcaB01g04886 Brassica carinata HOM05D007586 ORTHO05D009554 1.2e-16 89.7 53 75.5
SalBow2G2177 Salvia bowleyana HOM05D007586 ORTHO05D009554 1.2e-16 89.7 56 75.0
Psat1g185520 Pisum sativum HOM05D007586 ORTHO05D009554 1.6e-16 89.4 58 67.2
A03p09170 Brassica napus HOM05D007586 ORTHO05D009554 2.1e-16 89.0 53 75.5
BraA03t10240Z Brassica rapa HOM05D007586 ORTHO05D009554 2.1e-16 89.0 53 75.5
Thhalv10015193m.g Eutrema salsugineum HOM05D007586 ORTHO05D009554 2.1e-16 89.0 53 75.5
BraA10t44138Z Brassica rapa HOM05D007586 ORTHO05D009554 2.8e-16 88.6 53 75.5
Phvul.006G158400 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 4.7e-16 87.8 61 67.2
TWI09G0380 Tripterygium wilfordii HOM05D007586 ORTHO05D009554 4.7e-16 87.8 83 60.2
ECA246G1660 Erigeron canadensis HOM05D007586 ORTHO05D009554 1.0e-15 86.7 59 69.5
RcHm_v2.0_Chr4g0420101 Rosa chinensis HOM05D007586 ORTHO05D009554 1.0e-15 86.7 57 68.4
Phvul.006G158200 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 3.0e-15 85.1 61 62.3
Glyma.13G212100 Glycine max HOM05D007586 ORTHO05D009554 4.0e-15 84.7 61 63.9
COL.COLO4_25734 Corchorus olitorius HOM05D007586 ORTHO05D009554 6.8e-15 84.0 54 74.1
Prupe.1G146700 Prunus persica HOM05D007586 ORTHO05D009554 1.2e-14 83.2 58 63.8
TAR636G1069 Trochodendron aralioides HOM05D007586 ORTHO05D009554 1.2e-14 83.2 52 76.9
MD13G1177700 Malus domestica HOM05D007586 ORTHO05D009554 1.5e-14 82.8 52 71.2
CARHR194100 Cardamine hirsuta HOM05D007586 ORTHO05D009554 2.0e-14 82.4 53 69.8
Zm00001eb349880 Zea mays HOM05D007586 ORTHO05D009554 2.6e-14 82.0 57 64.9
ATR0626G363 Amborella trichopoda HOM05D007586 ORTHO05D009554 3.4e-14 81.6 60 58.3
PGR031G0345 Punica granatum HOM05D007586 ORTHO05D009554 5.7e-14 80.9 46 80.4
AUR62018376 Chenopodium quinoa HOM05D000949 ORTHO05D001276 9.8e-14 80.1 58 67.2
AL6G30270 Arabidopsis lyrata HOM05D007586 ORTHO05D009554 6.3e-13 77.4 44 79.5
AT5G18920 Arabidopsis thaliana HOM05D007586 ORTHO05D009554 6.3e-13 77.4 44 79.5
Carub.0006s1722 Capsella rubella HOM05D007586 ORTHO05D009554 6.3e-13 77.4 44 79.5
arahy.Tifrunner.gnm1.ann1.70FWSL Arachis hypogaea HOM05D007586 ORTHO05D009554 8.3e-13 77.0 69 55.1
CANSAT01G2672 Cannabis sativa HOM05D007586 ORTHO05D009554 8.3e-13 77.0 45 71.1
Lj3g0017006 Lotus japonicus HOM05D007586 ORTHO05D009554 1.4e-12 76.3 41 80.5
Hma1.2p1_0511F.1_g169220 Hydrangea macrophylla HOM05D000488 ORTHO05D000347 1.8e-12 75.9 41 78.0
Ciclev10006319m.g Citrus clementina HOM05D007586 ORTHO05D009554 5.4e-12 74.3 41 78.0
BcaB08g36636 Brassica carinata HOM05D007586 ORTHO05D009554 7.0e-12 73.9 44 75.0
Os05g0404300 Oryza sativa ssp. japonica HOM05D007586 ORTHO05D009554 9.2e-12 73.6 52 65.4
SEGI_37206 Sequoiadendron giganteum HOM05D007586 ORTHO05D009554 9.2e-12 73.6 53 54.7
FAN22G2185 Fragaria x ananassa HOM05D007586 ORTHO05D009554 1.2e-11 73.2 57 63.2
Aa31LG11G10810 Aethionema arabicum HOM05D007586 ORTHO05D009554 1.6e-11 72.8 40 77.5
BolC3t13546H Brassica oleracea HOM05D007586 ORTHO05D009554 1.6e-11 72.8 40 77.5
Nitab4.5_0009518g0010 Nicotiana tabacum HOM05D007586 ORTHO05D009554 1.6e-11 72.8 41 78.0
Nitab4.5_0000059g0210 Nicotiana tabacum HOM05D007586 ORTHO05D009554 3.8e-10 68.2 46 69.6
Nitab4.5_0000201g0230 Nicotiana tabacum HOM05D007586 ORTHO05D009554 3.8e-10 68.2 41 70.7
Pp3c2_37920 Physcomitrium patens HOM05D007586 ORTHO05D009554 3.8e-10 68.2 48 54.2
A10p20750 Brassica napus HOM05D007586 ORTHO05D009554 5.0e-10 67.8 39 76.9
Ca_00589_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 5.0e-10 67.8 38 73.7
Medtr2g020940 Medicago truncatula HOM05D007586 ORTHO05D009554 3.3e-09 65.1 44 63.6
Eucgr.B01188 Eucalyptus grandis HOM05D007586 ORTHO05D009554 5.2e-07 57.8 31 77.4
Peaxi162Scf00095g00411 Petunia axillaris HOM05D007586 ORTHO05D009554 5.7e-06 54.3 30 80.0


User provided reference genes

Program Settings