Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g02720 Coffea canephora HOM05D006695 ORTHO05D008239 1.1e-124 449.9 222 100.0
Sopen01g032270 Solanum pennellii HOM05D006695 ORTHO05D008239 6.3e-107 391.0 222 84.7
Actinidia23450 Actinidia chinensis HOM05D006695 ORTHO05D008239 1.4e-106 389.8 222 84.2
PGSC0003DMG400032106 Solanum tuberosum HOM05D006695 ORTHO05D008239 2.4e-106 389.0 222 84.2
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 5.3e-106 387.9 224 83.9
Solyc01g080470.3 Solanum lycopersicum HOM05D006695 ORTHO05D008239 6.9e-106 387.5 222 84.2
Peaxi162Scf00095g00413 Petunia axillaris HOM05D006695 ORTHO05D008239 1.5e-105 386.3 221 84.2
CAN.G889.4 Capsicum annuum HOM05D006695 ORTHO05D008239 2.6e-105 385.6 222 83.3
Hma1.2p1_0643F.1_g194500 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 5.9e-105 384.4 213 87.3
CSS0029139 Camellia sinensis var. sinensis HOM05D002837 ORTHO05D008239 1.7e-104 382.9 220 85.0
Nitab4.5_0000059g0220 Nicotiana tabacum HOM05D006695 ORTHO05D008239 5.0e-104 381.3 223 84.3
DCAR_022857 Daucus carota HOM05D006695 ORTHO05D008239 7.2e-103 377.5 223 81.6
QL06p006240 Quercus lobata HOM05D006695 ORTHO05D008239 3.9e-101 371.7 212 83.5
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 6.7e-101 370.9 226 78.8
TAR362G0795 Trochodendron aralioides HOM05D006695 ORTHO05D008239 1.5e-100 369.8 212 83.5
CiPaw.01G156500 Carya illinoinensis HOM05D006695 ORTHO05D008239 1.9e-100 369.4 212 83.5
TWI09G1388 Tripterygium wilfordii HOM05D006695 ORTHO05D008239 7.4e-100 367.5 212 82.5
Lj3A806T51 Lonicera japonica HOM05D006695 ORTHO05D008239 9.7e-100 367.1 219 81.3
GSVIVG01017849001 Vitis vinifera HOM05D006695 ORTHO05D008239 9.7e-100 367.1 212 83.0
Sed0007686 Sechium edule HOM05D006695 ORTHO05D008239 2.2e-99 365.9 213 82.2
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 2.2e-99 365.9 225 77.8
CsaV3_3G013940 Cucumis sativus L. HOM05D006695 ORTHO05D008239 2.8e-99 365.5 212 82.5
CANSAT78G2164 Cannabis sativa HOM05D006695 ORTHO05D008239 1.1e-98 363.6 213 81.7
Psat4g028960 Pisum sativum HOM05D006695 ORTHO05D008239 5.3e-98 361.3 213 79.8
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 6.9e-98 360.9 227 76.7
RcHm_v2.0_Chr4g0420161 Rosa chinensis HOM05D006695 ORTHO05D008239 6.9e-98 360.9 212 80.2
Cpa.g.sc16.75 Carica papaya HOM05D006695 ORTHO05D008239 1.2e-97 360.1 212 81.6
MELO3C006586.2 Cucumis melo HOM05D006695 ORTHO05D008239 1.2e-97 360.1 227 77.5
Medtr4g118420 Medicago truncatula HOM05D006695 ORTHO05D008239 1.2e-97 360.1 213 78.9
TPR.G28124 Trifolium pratense HOM05D006695 ORTHO05D008239 1.5e-97 359.8 212 79.2
Manes.03G188400 Manihot esculenta HOM05D006695 ORTHO05D008239 2.0e-97 359.4 215 80.9
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 2.0e-97 359.4 212 80.7
PGR004G1570 Punica granatum HOM05D006695 ORTHO05D008239 5.9e-97 357.8 212 82.1
Cfa015538 Carpinus fangiana HOM05D006695 ORTHO05D008239 1.0e-96 357.1 216 79.2
PSO832G0924 Papaver somniferum HOM05D006695 ORTHO05D008239 1.3e-96 356.7 220 76.8
Haze_01012 Corylus avellana HOM05D006695 ORTHO05D008239 2.2e-96 355.9 216 79.6
SalBow5G4654 Salvia bowleyana HOM05D006695 ORTHO05D008239 2.9e-96 355.5 227 76.7
SalBow5G4989 Salvia bowleyana HOM05D006695 ORTHO05D008239 2.9e-96 355.5 227 76.7
Atru.chr4.2706 Acer truncatum HOM05D006695 ORTHO05D008239 3.8e-96 355.1 212 81.6
Potri.008G198200 Populus trichocarpa HOM05D006695 ORTHO05D008239 3.8e-96 355.1 212 80.7
FvH4_4g16710 Fragaria vesca HOM05D006695 ORTHO05D008239 5.0e-96 354.8 212 78.8
Eucgr.H03643 Eucalyptus grandis HOM05D006695 ORTHO05D008239 6.5e-96 354.4 218 78.9
FAN07G1129 Fragaria x ananassa HOM05D006695 ORTHO05D008239 6.5e-96 354.4 212 78.8
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 6.5e-96 354.4 212 79.7
Ciclev10006973m.g Citrus clementina HOM05D006695 ORTHO05D008239 8.5e-96 354.0 212 81.1
FAN22G2065 Fragaria x ananassa HOM05D006695 ORTHO05D008239 8.5e-96 354.0 210 78.6
PSO210G1829 Papaver somniferum HOM05D006695 ORTHO05D008239 8.5e-96 354.0 220 76.8
Thecc.04G272900 Theobroma cacao HOM05D006695 ORTHO05D008239 8.5e-96 354.0 217 77.9
Aqoxy5G00568 Aquilegia oxysepala HOM05D006695 ORTHO05D008239 1.1e-95 353.6 219 77.6
Gorai.011G181900 Gossypium raimondii HOM05D006695 ORTHO05D008239 1.1e-95 353.6 212 79.7
FAN17G3101 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.4e-95 353.2 212 78.3
Gohir.A10G105600 Gossypium hirsutum HOM05D006695 ORTHO05D008239 1.4e-95 353.2 212 79.7
ECA233G4227 Erigeron canadensis HOM05D006695 ORTHO05D008239 7.2e-95 350.9 215 79.1
Gohir.D10G163000 Gossypium hirsutum HOM05D006695 ORTHO05D008239 7.2e-95 350.9 212 79.2
CARHR222310 Cardamine hirsuta HOM05D006695 ORTHO05D008239 9.4e-95 350.5 214 77.6
Sc25g0004560 Simmondsia chinensis HOM05D006695 ORTHO05D008239 9.4e-95 350.5 216 80.1
THA.LOC104821758 Tarenaya hassleriana HOM05D006695 ORTHO05D008239 9.4e-95 350.5 214 77.6
Thhalv10026193m.g Eutrema salsugineum HOM05D006695 ORTHO05D008239 1.2e-94 350.1 214 77.6
Lsat_1_v5_gn_6_64520 Lactuca sativa HOM05D006695 ORTHO05D008239 1.2e-94 350.1 218 77.5
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 2.1e-94 349.4 212 78.3
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 3.6e-94 348.6 213 78.4
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 6.1e-94 347.8 219 76.7
ClCG05G005600 Citrullus lanatus HOM05D006695 ORTHO05D008239 6.1e-94 347.8 200 83.5
Carub.0007s2636 Capsella rubella HOM05D006695 ORTHO05D008239 1.0e-93 347.1 216 76.9
BcaNung00267 Brassica carinata HOM05D006695 ORTHO05D008239 2.3e-93 345.9 214 76.6
AT4G15520 Arabidopsis thaliana HOM05D006695 ORTHO05D008239 3.0e-93 345.5 216 76.4
Duzib151G0948 Durio zibethinus HOM05D006695 ORTHO05D008239 3.9e-93 345.1 212 79.2
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 3.9e-93 345.1 213 76.5
AL7G40000 Arabidopsis lyrata HOM05D006695 ORTHO05D008239 6.7e-93 344.4 216 76.9
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 8.8e-93 344.0 213 77.9
A03p49160 Brassica napus HOM05D006695 ORTHO05D008239 1.1e-92 343.6 214 77.1
Sp7g13770 Schrenkiella parvula HOM05D006695 ORTHO05D008239 1.1e-92 343.6 214 75.7
Aa31LG9G1920 Aethionema arabicum HOM05D006695 ORTHO05D008239 2.0e-92 342.8 210 75.7
BraA03t14010Z Brassica rapa HOM05D006695 ORTHO05D008239 2.0e-92 342.8 218 76.6
A01p22050 Brassica napus HOM05D006695 ORTHO05D008239 2.5e-92 342.4 214 76.2
BolC1t02683H Brassica oleracea HOM05D006695 ORTHO05D008239 2.5e-92 342.4 214 76.2
BraA01t02111Z Brassica rapa HOM05D006695 ORTHO05D008239 2.5e-92 342.4 214 76.2
Nitab4.5_0006860g0010 Nicotiana tabacum HOM05D006695 ORTHO05D008239 2.5e-92 342.4 222 77.9
AUR62040724 Chenopodium quinoa HOM05D006695 ORTHO05D008239 4.3e-92 341.7 215 77.2
BcaC09g50242 Brassica carinata HOM05D006695 ORTHO05D008239 5.7e-92 341.3 214 76.2
BcaC09g50247 Brassica carinata HOM05D006695 ORTHO05D008239 5.7e-92 341.3 214 76.2
C01p27440 Brassica napus HOM05D006695 ORTHO05D008239 7.4e-92 340.9 214 75.7
BcaC06g32939 Brassica carinata HOM05D006695 ORTHO05D008239 1.3e-91 340.1 216 76.4
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 1.7e-91 339.7 215 76.7
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 1.1e-90 337.0 216 77.8
unitig_8.g3083 Utricularia gibba HOM05D006695 ORTHO05D008239 1.4e-90 336.7 218 76.1
HanXRQChr08g0235981 Helianthus annuus HOM05D006695 ORTHO05D008239 9.1e-90 334.0 219 73.1
Sed0005422 Sechium edule HOM05D006695 ORTHO05D008239 1.3e-88 330.1 201 80.6
CDE02G2295 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 3.2e-87 325.5 198 77.3
BcaC06g33413 Brassica carinata HOM05D006695 ORTHO05D008239 1.7e-83 313.2 218 72.0
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 1.4e-82 310.1 210 71.9
Zm00001eb108650 Zea mays HOM05D006695 ORTHO05D008239 3.5e-81 305.4 213 70.0
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 4.5e-81 305.1 206 69.4
Os05g0141400 Oryza sativa ssp. japonica HOM05D006695 ORTHO05D008239 2.9e-80 302.4 209 69.4
ATR0580G301 Amborella trichopoda HOM05D006695 ORTHO05D008239 5.0e-80 301.6 219 68.5
CDE08G0351 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 1.2e-78 297.0 212 70.3
C07p47200 Brassica napus HOM05D006695 ORTHO05D008239 1.6e-78 296.6 193 75.6
SHI00328 Sapria himalayana HOM05D006695 ORTHO05D008239 1.8e-77 293.1 213 69.5
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 1.5e-76 290.0 188 70.7
BolC7t45242H Brassica oleracea HOM05D006695 ORTHO05D008239 6.3e-75 284.6 188 75.0
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 1.3e-72 276.9 195 65.6
Dinv38348 Davidia involucrata HOM05D006695 ORTHO05D008239 2.5e-71 272.7 147 87.1
Hma1.2p1_0643F.1_g194510 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 4.7e-70 268.5 148 86.5
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 3.0e-69 265.8 198 65.2
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 5.2e-69 265.0 212 61.3
vmacro08234 Vaccinium macrocarpon HOM05D006695 ORTHO05D008239 1.2e-68 263.8 154 83.1
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 4.1e-66 255.4 146 81.5
FAN12G3773 Fragaria x ananassa HOM05D006695 ORTHO05D008239 2.0e-65 253.1 258 53.9
MD16G1178900 Malus domestica HOM05D006695 ORTHO05D008239 1.2e-60 237.3 145 77.2
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 4.0e-53 212.2 177 55.9
MCO16G273 Micromonas commoda HOM05D006695 ORTHO05D008239 8.6e-48 194.5 188 49.5
FAN12G1880 Fragaria x ananassa HOM05D006695 ORTHO05D008239 4.9e-43 178.7 100 83.0
PRCOL_00001113 Prasinoderma coloniale HOM05D006695 ORTHO05D008239 3.4e-36 156.0 201 46.8
SEGI_22589 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 4.9e-27 125.6 97 62.9
arahy.Tifrunner.gnm1.ann1.5C91KI Arachis hypogaea HOM05D006695 ORTHO05D008239 1.4e-26 124.0 66 87.9
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 3.2e-26 122.9 85 68.2
CBR_g29509 Chara braunii HOM05D006695 ORTHO05D008239 1.7e-24 117.1 84 64.3
CBR_g29507 Chara braunii HOM05D006695 ORTHO05D008239 2.8e-22 109.8 87 60.9
ATR0235G001 Amborella trichopoda HOM05D006695 ORTHO05D008239 1.4e-21 107.5 66 72.7
MD13G1177100 Malus domestica HOM05D006695 ORTHO05D008239 2.7e-17 93.2 64 67.2
Oeu037660.1 Olea europaea HOM05D006695 ORTHO05D008239 8.7e-16 88.2 146 39.7
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 5.1e-08 62.4 142 27.5
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 5.1e-08 62.4 150 26.0
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 6.7e-08 62.0 142 27.5
arahy.Tifrunner.gnm1.ann1.A7EL5Y Arachis hypogaea HOM05D003181 ORTHO05D003689 8.7e-08 61.6 41 65.9
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 8.7e-08 61.6 142 26.8
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 8.7e-08 61.6 142 26.8
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.1e-07 61.2 148 29.1
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.1e-07 61.2 148 29.1
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 1.5e-07 60.8 148 27.0
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 3.3e-07 59.7 188 25.5
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 3.3e-07 59.7 150 25.3
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 5.6e-07 58.9 185 23.8
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 5.6e-07 58.9 150 27.3
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 7.4e-07 58.5 150 27.3
MELO3C013239.2 Cucumis melo HOM05D000031 ORTHO05D000030 1.3e-06 57.8 41 65.9
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 1.6e-06 57.4 182 25.3
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 1.6e-06 57.4 179 24.6
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 3.6e-06 56.2 172 26.2
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 3.6e-06 56.2 172 26.2
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 3.6e-06 56.2 172 26.2
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 3.6e-06 56.2 172 26.2
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 4.8e-06 55.8 172 26.2


User provided reference genes

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